Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:31:31 (675244): wrapper (7.7.26015): starting
17:31:31 (675244): wrapper: running run_atlas (--nthreads 10)
[2025-12-25 17:31:31] Arguments: --nthreads 10
[2025-12-25 17:31:31] Threads: 10
[2025-12-25 17:31:31] Checking for CVMFS
[2025-12-25 17:31:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-25 17:31:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-25 17:31:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-25 17:31:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-25 17:31:32] 2.13.3.0 9874 508 60448 154420 3 54 39178286 39288832 6051 16776704 0 205544 99.973 17115 32850 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-25 17:31:32] CVMFS is ok
[2025-12-25 17:31:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-25 17:31:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-25 17:31:32] Further information can be found at the LHC@home message board.
[2025-12-25 17:31:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-25 17:31:32] Checking for apptainer binary...
[2025-12-25 17:31:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-25 17:31:32] Running /usr/bin/apptainer --version
[2025-12-25 17:31:32] apptainer version 1.4.5-2.el9
[2025-12-25 17:31:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-25 17:31:33] c-210-11.aglt2.org
[2025-12-25 17:31:33] apptainer works
[2025-12-25 17:31:33] Set ATHENA_PROC_NUMBER=10
[2025-12-25 17:31:33] Set ATHENA_CORE_NUMBER=10
[2025-12-25 17:31:33] Starting ATLAS job with PandaID=6935893273
[2025-12-25 17:31:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-25 19:00:17]  *** The last 200 lines of the pilot log: ***
[2025-12-25 19:00:17] 2025-12-25 23:59:28,700 | INFO     |  -- lfn=log.47929392._002328.job.log.tgz.1, status_code=0, status=transferred
[2025-12-25 19:00:17] 2025-12-25 23:59:28,700 | INFO     | stage-out finished correctly
[2025-12-25 19:00:17] 2025-12-25 23:59:29,541 | INFO     | time since job start (5245s) is within the limit (174528.0s)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,392 | WARNING  | process 685819 can no longer be monitored (due to stat problems) - aborting
[2025-12-25 19:00:17] 2025-12-25 23:59:31,392 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6935893273/memory_monitor_summary.json (trf name=prmon)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,393 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6935893273/memory_monitor_summary.json (trf name=prmon)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,394 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-25 19:00:17] 2025-12-25 23:59:31,394 | WARNING  | maxPSS not found in memory monitor output
[2025-12-25 19:00:17] 2025-12-25 23:59:31,395 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3346151 B
[2025-12-25 19:00:17] 2025-12-25 23:59:31,395 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15353 B
[2025-12-25 19:00:17] 2025-12-25 23:59:31,395 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-25 19:00:17] 2025-12-25 23:59:31,408 | INFO     | sufficient remaining disk space (53774123008 B)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,408 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,409 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6935893273: 3647485 B (within 2768240640 B limit)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,409 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6935893273/HITS.47929392._002328.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,410 | INFO     | total size of present files: 0 B (workdir size: 3647485 B)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,410 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6935893273/HITS.47929392._002328.pool.root.1 since it does not exist
[2025-12-25 19:00:17] 2025-12-25 23:59:31,547 | INFO     | time since job start (5247s) is within the limit (174528.0s)
[2025-12-25 19:00:17] 2025-12-25 23:59:31,626 | INFO     | number of running child processes to parent process 685819: 1
[2025-12-25 19:00:17] 2025-12-25 23:59:31,627 | INFO     | maximum number of monitored processes: 6
[2025-12-25 19:00:17] 2025-12-25 23:59:32,273 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-25 19:00:17] 2025-12-25 23:59:33,553 | INFO     | time since job start (5249s) is within the limit (174528.0s)
[2025-12-25 19:00:17] 2025-12-25 23:59:34,127 | INFO     | monitor loop #393: job 0:6935893273 is in state 'finished'
[2025-12-25 19:00:17] 2025-12-25 23:59:34,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-25 19:00:17] 2025-12-25 23:59:34,144 | INFO     | job 6935893273 has state=finished
[2025-12-25 19:00:17] 2025-12-25 23:59:34,144 | INFO     | preparing for final server update for job 6935893273 in state='finished'
[2025-12-25 19:00:17] 2025-12-25 23:59:34,145 | INFO     | this job has now completed (state=finished)
[2025-12-25 19:00:17] 2025-12-25 23:59:34,145 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-25 19:00:17] 2025-12-25 23:59:34,145 | INFO     | log transfer has been attempted: DONE
[2025-12-25 19:00:17] 2025-12-25 23:59:34,145 | INFO     | job 6935893273 has finished - writing final server update
[2025-12-25 19:00:17] 2025-12-25 23:59:34,145 | INFO     | total number of processed events: 400 (read)
[2025-12-25 19:00:17] 2025-12-25 23:59:34,146 | INFO     | executing command: lscpu
[2025-12-25 19:00:17] 2025-12-25 23:59:34,186 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-25 19:00:17] 2025-12-25 23:59:35,559 | INFO     | time since job start (5251s) is within the limit (174528.0s)
[2025-12-25 19:00:17] 2025-12-25 23:59:36,631 | INFO     | monitor loop #394: job 0:6935893273 is in state 'finished'
[2025-12-25 19:00:17] 2025-12-25 23:59:36,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-25 19:00:17] 2025-12-25 23:59:37,565 | INFO     | time since job start (5253s) is within the limit (174528.0s)
[2025-12-25 19:00:17] 2025-12-25 23:59:37,624 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-25 19:00:17] 2025-12-25 23:59:37,631 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2739.8417250000007
[2025-12-25 19:00:17] 2025-12-25 23:59:37,637 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6935893273/memory_monitor_summary.json (trf name=prmon)
[2025-12-25 19:00:17] 2025-12-25 23:59:37,638 | INFO     | extracted standard info from prmon json
[2025-12-25 19:00:17] 2025-12-25 23:59:37,638 | INFO     | extracted standard memory fields from prmon json
[2025-12-25 19:00:17] 2025-12-25 23:59:37,638 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-25 19:00:17] 2025-12-25 23:59:37,639 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-25 19:00:17] 2025-12-25 23:59:37,639 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-25 19:00:17] 2025-12-25 23:59:37,641 | INFO     | fitting pss+swap vs Time
[2025-12-25 19:00:17] 2025-12-25 23:59:37,641 | INFO     | sum of square deviations: 147126479.5
[2025-12-25 19:00:17] 2025-12-25 23:59:37,642 | INFO     | sum of deviations: -10231444020.5
[2025-12-25 19:00:17] 2025-12-25 23:59:37,642 | INFO     | mean x: 1766704632.5
[2025-12-25 19:00:17] 2025-12-25 23:59:37,642 | INFO     | mean y: 2765158.346153846
[2025-12-25 19:00:17] 2025-12-25 23:59:37,642 | INFO     | intersect: 122862631102.34012
[2025-12-25 19:00:17] 2025-12-25 23:59:37,643 | INFO     | chi2: 0.18148694587313846
[2025-12-25 19:00:17] 2025-12-25 23:59:37,643 | INFO     | current memory leak: -69.54 B/s (using 78 data points, chi2=0.18)
[2025-12-25 19:00:17] 2025-12-25 23:59:37,643 | INFO     | could have reported an average CPU frequency of 2626 MHz (6 samples)
[2025-12-25 19:00:17] 2025-12-25 23:59:37,643 | INFO     | ..............................
[2025-12-25 19:00:17] 2025-12-25 23:59:37,643 | INFO     | . Timing measurements:
[2025-12-25 19:00:17] 2025-12-25 23:59:37,643 | INFO     | . get job = 0 s
[2025-12-25 19:00:17] 2025-12-25 23:59:37,644 | INFO     | . initial setup = 5 s
[2025-12-25 19:00:17] 2025-12-25 23:59:37,644 | INFO     | . payload setup = 15 s
[2025-12-25 19:00:17] 2025-12-25 23:59:37,644 | INFO     | . stage-in = 0 s
[2025-12-25 19:00:17] 2025-12-25 23:59:37,644 | INFO     | . payload execution = 5199 s
[2025-12-25 19:00:17] 2025-12-25 23:59:37,644 | INFO     | . stage-out = 0 s
[2025-12-25 19:00:17] 2025-12-25 23:59:37,644 | INFO     | . log creation = 0 s
[2025-12-25 19:00:17] 2025-12-25 23:59:37,644 | INFO     | ..............................
[2025-12-25 19:00:17] 2025-12-25 23:59:37,754 | INFO     | 
[2025-12-25 19:00:17] 2025-12-25 23:59:37,754 | INFO     | job summary report
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | --------------------------------------------------
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | PanDA job id: 6935893273
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | task id: 47929392
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | errors: (none)
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | pilot state: finished 
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | transexitcode: 0
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | exeerrorcode: 0
[2025-12-25 19:00:17] 2025-12-25 23:59:37,755 | INFO     | exeerrordiag: 
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | exitcode: 0
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | exitmsg: OK
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | cpuconsumptiontime: 43003 s
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | nevents: 400
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | neventsw: 0
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | pid: 685819
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | pgrp: 685819
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | corecount: 10
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | event service: False
[2025-12-25 19:00:17] 2025-12-25 23:59:37,756 | INFO     | sizes: {0: 2283843, 1: 2284014, 2: 2284070, 9: 2284332, 13: 2284360, 5218: 2310813, 5220: 2319811, 5224: 2319991, 5229: 2320185}
[2025-12-25 19:00:17] 2025-12-25 23:59:37,757 | INFO     | --------------------------------------------------
[2025-12-25 19:00:17] 2025-12-25 23:59:37,757 | INFO     | 
[2025-12-25 19:00:17] 2025-12-25 23:59:37,757 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-25 19:00:17] 2025-12-25 23:59:37,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-25 19:00:17] 2025-12-25 23:59:37,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-25 19:00:17] 2025-12-25 23:59:37,777 | INFO     | job 6935893273 has completed (purged errors)
[2025-12-25 19:00:17] 2025-12-25 23:59:37,777 | INFO     | overall cleanup function is called
[2025-12-25 19:00:17] 2025-12-25 23:59:38,785 | INFO     | --- collectZombieJob: --- 10, [685819]
[2025-12-25 19:00:17] 2025-12-25 23:59:38,786 | INFO     | zombie collector waiting for pid 685819
[2025-12-25 19:00:17] 2025-12-25 23:59:38,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-25 19:00:17] 2025-12-25 23:59:38,786 | INFO     | collected zombie processes
[2025-12-25 19:00:17] 2025-12-25 23:59:38,786 | INFO     | will attempt to kill all subprocesses of pid=685819
[2025-12-25 19:00:17] 2025-12-25 23:59:39,001 | INFO     | process IDs to be killed: [685819] (in reverse order)
[2025-12-25 19:00:17] 2025-12-25 23:59:39,063 | WARNING  | found no corresponding commands to process id(s)
[2025-12-25 19:00:17] 2025-12-25 23:59:39,064 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-25 19:00:17] 2025-12-25 23:59:39,070 | INFO     | did not find any defunct processes belonging to 685819
[2025-12-25 19:00:17] 2025-12-25 23:59:39,077 | INFO     | did not find any defunct processes belonging to 685819
[2025-12-25 19:00:17] 2025-12-25 23:59:39,077 | INFO     | ready for new job
[2025-12-25 19:00:17] 2025-12-25 23:59:39,077 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-25 19:00:17] 2025-12-25 23:59:39,079 | INFO     | ***************************************
[2025-12-25 19:00:17] 2025-12-25 23:59:39,079 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-25 19:00:17] 2025-12-25 23:59:39,079 | INFO     | ***************************************
[2025-12-25 19:00:17] 2025-12-25 23:59:39,079 | INFO     | 
[2025-12-25 19:00:17] 2025-12-25 23:59:39,081 | INFO     | architecture information:
[2025-12-25 19:00:17] 2025-12-25 23:59:39,082 | INFO     | executing command: cat /etc/os-release
[2025-12-25 19:00:17] 2025-12-25 23:59:39,095 | INFO     | cat /etc/os-release:
[2025-12-25 19:00:17] NAME="CentOS Linux"
[2025-12-25 19:00:17] VERSION="7 (Core)"
[2025-12-25 19:00:17] ID="centos"
[2025-12-25 19:00:17] ID_LIKE="rhel fedora"
[2025-12-25 19:00:17] VERSION_ID="7"
[2025-12-25 19:00:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-25 19:00:17] ANSI_COLOR="0;31"
[2025-12-25 19:00:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-25 19:00:17] HOME_URL="https://www.centos.org/"
[2025-12-25 19:00:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-25 19:00:17] 
[2025-12-25 19:00:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-25 19:00:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-25 19:00:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-25 19:00:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-25 19:00:17] 
[2025-12-25 19:00:17] 2025-12-25 23:59:39,095 | INFO     | ***************************************
[2025-12-25 19:00:17] 2025-12-25 23:59:39,598 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-25 19:00:17] 2025-12-25 23:59:39,613 | INFO     | sufficient remaining disk space (53778317312 B)
[2025-12-25 19:00:17] 2025-12-25 23:59:39,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-25 19:00:17] 2025-12-25 23:59:39,613 | INFO     | current server update state: UPDATING_FINAL
[2025-12-25 19:00:17] 2025-12-25 23:59:39,614 | INFO     | update_server=False
[2025-12-25 19:00:17] 2025-12-25 23:59:39,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-25 19:00:17] 2025-12-25 23:59:39,614 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-25 19:00:17] 2025-12-25 23:59:39,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-25 19:00:17] 2025-12-25 23:59:39,711 | INFO     | all data control threads have been joined
[2025-12-25 19:00:17] 2025-12-25 23:59:39,811 | INFO     | all job control threads have been joined
[2025-12-25 19:00:17] 2025-12-25 23:59:40,139 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-25 19:00:17] 2025-12-25 23:59:40,140 | INFO     | aborting loop
[2025-12-25 19:00:17] 2025-12-25 23:59:40,619 | INFO     | [job] retrieve thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:40,620 | INFO     | [job] queue monitor thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:40,640 | INFO     | [payload] validate_pre thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:40,640 | INFO     | [data] copytool_in thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:40,717 | INFO     | [data] control thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:40,787 | INFO     | all payload control threads have been joined
[2025-12-25 19:00:17] 2025-12-25 23:59:40,816 | INFO     | [job] control thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:40,899 | INFO     | [payload] validate_post thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:40,917 | INFO     | [payload] execute_payloads thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:41,145 | INFO     | [job] job monitor thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:41,184 | INFO     | [job] create_data_payload thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:41,413 | INFO     | [payload] failed_post thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:41,619 | INFO     | [data] copytool_out thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:41,746 | INFO     | [job] validate thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:41,793 | INFO     | [payload] control thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:42,885 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-25 19:00:17] 2025-12-25 23:59:46,891 | INFO     | [data] queue_monitor thread has finished
[2025-12-25 19:00:17] 2025-12-25 23:59:49,978 | INFO     | job.realtimelogging is not enabled
[2025-12-25 19:00:17] 2025-12-25 23:59:50,983 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-25 19:00:17] 2025-12-26 00:00:10,921 | INFO     | PID=679285 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-25 19:00:17] 2025-12-26 00:00:10,922 | INFO     | .. there are 4 such processes running
[2025-12-25 19:00:17] 2025-12-26 00:00:10,922 | INFO     | found 0 job(s) in 20 queues
[2025-12-25 19:00:17] 2025-12-26 00:00:10,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-25 19:00:17] 2025-12-26 00:00:10,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-25 19:00:17] 2025-12-26 00:00:11,905 | INFO     | [monitor] cgroup control has ended
[2025-12-25 19:00:17] 2025-12-26 00:00:12,027 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140687092766528)>', '<ExcThread(monitor, started 140686527547136)>']
[2025-12-25 19:00:17] 2025-12-26 00:00:12,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-25 19:00:17] 2025-12-26 00:00:12,933 | INFO     | [monitor] control thread has ended
[2025-12-25 19:00:17] 2025-12-26 00:00:17,052 | INFO     | all workflow threads have been joined
[2025-12-25 19:00:17] 2025-12-26 00:00:17,052 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-25 19:00:17] 2025-12-26 00:00:17,052 | INFO     | traces error code: 0
[2025-12-25 19:00:17] 2025-12-26 00:00:17,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-25 19:00:17] 2025-12-26 00:00:17,164 [wrapper] ==== pilot stdout END ====
[2025-12-25 19:00:17] 2025-12-26 00:00:17,167 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-25 19:00:17] 2025-12-26 00:00:17,169 [wrapper] pilotpid: 679285
[2025-12-25 19:00:17] 2025-12-26 00:00:17,171 [wrapper] Pilot exit status: 0
[2025-12-25 19:00:17] 2025-12-26 00:00:17,181 [wrapper] pandaids: 6935893273
[2025-12-25 19:00:17] 2025-12-26 00:00:17,225 [wrapper] cleanup supervisor_pilot  789554 679286
[2025-12-25 19:00:17] 2025-12-26 00:00:17,227 [wrapper] Test setup, not cleaning
[2025-12-25 19:00:17] 2025-12-26 00:00:17,230 [wrapper] apfmon messages muted
[2025-12-25 19:00:17] 2025-12-26 00:00:17,232 [wrapper] ==== wrapper stdout END ====
[2025-12-25 19:00:17] 2025-12-26 00:00:17,235 [wrapper] ==== wrapper stderr END ====
[2025-12-25 19:00:17]  *** Error codes and diagnostics ***
[2025-12-25 19:00:17]     "exeErrorCode": 0,
[2025-12-25 19:00:17]     "exeErrorDiag": "",
[2025-12-25 19:00:17]     "pilotErrorCode": 0,
[2025-12-25 19:00:17]     "pilotErrorDiag": "",
[2025-12-25 19:00:17]  *** Listing of results directory ***
[2025-12-25 19:00:17] total 430236
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas    579449 Dec 19 11:45 pilot3.tar.gz
[2025-12-25 19:00:17] -rwx------. 1 boincer umatlas     36322 Dec 19 11:47 runpilot2-wrapper.sh
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas      5112 Dec 19 11:51 queuedata.json
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas       100 Dec 25 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-25 19:00:17] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 25 17:31 run_atlas
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas       105 Dec 25 17:31 job.xml
[2025-12-25 19:00:17] -rw-r--r--. 2 boincer umatlas 250397710 Dec 25 17:31 EVNT.47929390._000094.pool.root.1
[2025-12-25 19:00:17] -rw-r--r--. 2 boincer umatlas     15847 Dec 25 17:31 start_atlas.sh
[2025-12-25 19:00:17] drwxrwx--x. 2 boincer umatlas      4096 Dec 25 17:31 shared
[2025-12-25 19:00:17] -rw-r--r--. 2 boincer umatlas    592399 Dec 25 17:31 input.tar.gz
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas         0 Dec 25 17:31 boinc_lockfile
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas      2548 Dec 25 17:31 pandaJob.out
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas        57 Dec 25 17:31 setup.sh.local
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas    989280 Dec 25 17:31 agis_schedconf.cvmfs.json
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas   1516240 Dec 25 17:32 agis_ddmendpoints.agis.ALL.json
[2025-12-25 19:00:17] drwx------. 5 boincer umatlas      4096 Dec 25 17:32 pilot3
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas      6656 Dec 25 18:56 init_data.xml
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas 183996775 Dec 25 18:58 HITS.47929392._002328.pool.root.1
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas       530 Dec 25 18:58 boinc_task_state.xml
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas      1038 Dec 25 18:59 memory_monitor_summary.json
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas        95 Dec 25 18:59 pilot_heartbeat.json
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas    353788 Dec 25 18:59 log.47929392._002328.job.log.tgz.1
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas      7816 Dec 25 18:59 heartbeat.json
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas        27 Dec 25 19:00 wrapper_checkpoint.txt
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas      8192 Dec 25 19:00 boinc_mmap_file
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas      4894 Dec 25 19:00 pilotlog.txt
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas    769806 Dec 25 19:00 log.47929392._002328.job.log.1
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas       357 Dec 25 19:00 output.list
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas       620 Dec 25 19:00 runtime_log
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas   1146880 Dec 25 19:00 result.tar.gz
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas       653 Dec 25 19:00 sAxNDmMosq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeegKDmc4gpwn.diag
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas      9344 Dec 25 19:00 runtime_log.err
[2025-12-25 19:00:17] -rw-r--r--. 1 boincer umatlas     22471 Dec 25 19:00 stderr.txt
[2025-12-25 19:00:17] HITS file was successfully produced:
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas 183996775 Dec 25 18:58 shared/HITS.pool.root.1
[2025-12-25 19:00:17]  *** Contents of shared directory: ***
[2025-12-25 19:00:17] total 425940
[2025-12-25 19:00:17] -rw-r--r--. 2 boincer umatlas 250397710 Dec 25 17:31 ATLAS.root_0
[2025-12-25 19:00:17] -rw-r--r--. 2 boincer umatlas     15847 Dec 25 17:31 start_atlas.sh
[2025-12-25 19:00:17] -rw-r--r--. 2 boincer umatlas    592399 Dec 25 17:31 input.tar.gz
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas 183996775 Dec 25 18:58 HITS.pool.root.1
[2025-12-25 19:00:17] -rw-------. 1 boincer umatlas   1146880 Dec 25 19:00 result.tar.gz
19:00:18 (675244): run_atlas exited; CPU time 43124.775706
19:00:18 (675244): called boinc_finish(0)

</stderr_txt>
]]>

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