Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:11:52 (3317890): wrapper (7.7.26015): starting
20:11:52 (3317890): wrapper: running run_atlas (--nthreads 11)
[2025-12-24 20:11:52] Arguments: --nthreads 11
[2025-12-24 20:11:52] Threads: 11
[2025-12-24 20:11:52] Checking for CVMFS
[2025-12-24 20:11:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-24 20:11:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-24 20:11:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-24 20:11:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-24 20:11:53] 2.13.3.0 9432 74925 209616 154387 0 159 35327907 39288832 2554 16776704 0 131032 99.978 11046 31560 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-24 20:11:53] CVMFS is ok
[2025-12-24 20:11:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-24 20:11:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-24 20:11:53] Further information can be found at the LHC@home message board.
[2025-12-24 20:11:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-24 20:11:53] Checking for apptainer binary...
[2025-12-24 20:11:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-24 20:11:53] Running /usr/bin/apptainer --version
[2025-12-24 20:11:53] apptainer version 1.4.5-2.el9
[2025-12-24 20:11:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-24 20:11:53] c-211-5.aglt2.org
[2025-12-24 20:11:53] apptainer works
[2025-12-24 20:11:53] Set ATHENA_PROC_NUMBER=11
[2025-12-24 20:11:53] Set ATHENA_CORE_NUMBER=11
[2025-12-24 20:11:53] Starting ATLAS job with PandaID=6937249877
[2025-12-24 20:11:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:51:09 (9540): wrapper (7.7.26015): starting
12:51:09 (9540): wrapper: running run_atlas (--nthreads 9)
[2025-12-25 12:51:09] Arguments: --nthreads 9
[2025-12-25 12:51:09] Threads: 9
[2025-12-25 12:51:09] This job has been restarted, cleaning up previous attempt
[2025-12-25 12:51:09] Checking for CVMFS
[2025-12-25 12:51:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-25 12:51:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-25 12:51:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-25 12:51:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-25 12:51:11] 2.13.3.0 9728 0 29240 154413 3 1 36879293 39288833 0 16776704 0 0 100.000 0 n/a http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-25 12:51:11] CVMFS is ok
[2025-12-25 12:51:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-25 12:51:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-25 12:51:11] Further information can be found at the LHC@home message board.
[2025-12-25 12:51:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-25 12:51:11] Checking for apptainer binary...
[2025-12-25 12:51:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-25 12:51:11] Running /usr/bin/apptainer --version
[2025-12-25 12:51:11] apptainer version 1.4.5-2.el9
[2025-12-25 12:51:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-25 12:51:11] c-211-5.aglt2.org
[2025-12-25 12:51:11] apptainer works
[2025-12-25 12:51:11] Set ATHENA_PROC_NUMBER=9
[2025-12-25 12:51:11] Set ATHENA_CORE_NUMBER=9
[2025-12-25 12:51:11] Starting ATLAS job with PandaID=6937249877
[2025-12-25 12:51:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-27 09:36:31]  *** The last 200 lines of the pilot log: ***
[2025-12-27 09:36:31] 2025-12-27 14:35:57,465 | INFO     | monitor loop #9776: job 0:6937249877 is in state 'finished'
[2025-12-27 09:36:31] 2025-12-27 14:35:57,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-27 09:36:31] 2025-12-27 14:35:58,026 | INFO     | time since job start (161080s) is within the limit (174528.0s)
[2025-12-27 09:36:31] 2025-12-27 14:35:58,708 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-27 09:36:31] 2025-12-27 14:35:58,715 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.9397
[2025-12-27 09:36:31] 2025-12-27 14:35:58,722 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6937249877/memory_monitor_summary.json (trf name=prmon)
[2025-12-27 09:36:31] 2025-12-27 14:35:58,723 | INFO     | extracted standard info from prmon json
[2025-12-27 09:36:31] 2025-12-27 14:35:58,723 | INFO     | extracted standard memory fields from prmon json
[2025-12-27 09:36:31] 2025-12-27 14:35:58,724 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-27 09:36:31] 2025-12-27 14:35:58,773 | INFO     | fitting pss+swap vs Time
[2025-12-27 09:36:31] 2025-12-27 14:35:58,777 | INFO     | sum of square deviations: 5711949963127.9795
[2025-12-27 09:36:31] 2025-12-27 14:35:58,934 | INFO     | sum of deviations: 12582942714647.781
[2025-12-27 09:36:31] 2025-12-27 14:35:58,935 | INFO     | mean x: 1766765621.1215448
[2025-12-27 09:36:31] 2025-12-27 14:35:58,935 | INFO     | mean y: 3183895.919727376
[2025-12-27 09:36:31] 2025-12-27 14:35:58,935 | INFO     | intersect: -3888851353.739095
[2025-12-27 09:36:31] 2025-12-27 14:35:58,939 | INFO     | chi2: 6.484627477454975
[2025-12-27 09:36:31] 2025-12-27 14:35:58,943 | INFO     | sum of square deviations: 5679571944794.176
[2025-12-27 09:36:31] 2025-12-27 14:35:59,106 | INFO     | sum of deviations: 13586563672039.85
[2025-12-27 09:36:31] 2025-12-27 14:35:59,107 | INFO     | mean x: 1766765468.627466
[2025-12-27 09:36:31] 2025-12-27 14:35:59,107 | INFO     | mean y: 3188622.559939302
[2025-12-27 09:36:31] 2025-12-27 14:35:59,107 | INFO     | intersect: -4223234031.539971
[2025-12-27 09:36:31] 2025-12-27 14:35:59,111 | INFO     | chi2: 3.264739151127591
[2025-12-27 09:36:31] 2025-12-27 14:35:59,111 | INFO     | current chi2=3.264739151127591 (change=49.654175779903014 %)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,114 | INFO     | sum of square deviations: 5647316533410.179
[2025-12-27 09:36:31] 2025-12-27 14:35:59,277 | INFO     | sum of deviations: 13999951557063.291
[2025-12-27 09:36:31] 2025-12-27 14:35:59,278 | INFO     | mean x: 1766765316.1334093
[2025-12-27 09:36:31] 2025-12-27 14:35:59,278 | INFO     | mean y: 3190576.2014443176
[2025-12-27 09:36:31] 2025-12-27 14:35:59,278 | INFO     | intersect: -4376700066.059249
[2025-12-27 09:36:31] 2025-12-27 14:35:59,281 | INFO     | chi2: 2.5482165801036727
[2025-12-27 09:36:31] 2025-12-27 14:35:59,282 | INFO     | current chi2=2.5482165801036727 (change=21.947314558850508 %)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,282 | INFO     | right removable region: 2630
[2025-12-27 09:36:31] 2025-12-27 14:35:59,285 | INFO     | sum of square deviations: 5679566915954.168
[2025-12-27 09:36:31] 2025-12-27 14:35:59,451 | INFO     | sum of deviations: 11803004104691.352
[2025-12-27 09:36:31] 2025-12-27 14:35:59,451 | INFO     | mean x: 1766765773.627466
[2025-12-27 09:36:31] 2025-12-27 14:35:59,451 | INFO     | mean y: 3187567.2905918057
[2025-12-27 09:36:31] 2025-12-27 14:35:59,451 | INFO     | intersect: -3668420494.862127
[2025-12-27 09:36:31] 2025-12-27 14:35:59,455 | INFO     | chi2: 4.3785963508229635
[2025-12-27 09:36:31] 2025-12-27 14:35:59,455 | INFO     | current chi2=4.3785963508229635 (change=32.477287769482885 %)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,459 | INFO     | sum of square deviations: 5647306475730.169
[2025-12-27 09:36:31] 2025-12-27 14:35:59,622 | INFO     | sum of deviations: 11653664995765.58
[2025-12-27 09:36:31] 2025-12-27 14:35:59,622 | INFO     | mean x: 1766765926.1334093
[2025-12-27 09:36:31] 2025-12-27 14:35:59,622 | INFO     | mean y: 3188273.1379703535
[2025-12-27 09:36:31] 2025-12-27 14:35:59,623 | INFO     | intersect: -3642673398.7186418
[2025-12-27 09:36:31] 2025-12-27 14:35:59,626 | INFO     | chi2: 4.35574213531278
[2025-12-27 09:36:31] 2025-12-27 14:35:59,626 | INFO     | current chi2=4.35574213531278 (change=0.5219530114002893 %)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,626 | INFO     | left removable region: 20
[2025-12-27 09:36:31] 2025-12-27 14:35:59,630 | INFO     | sum of square deviations: 5513157150393.14
[2025-12-27 09:36:31] 2025-12-27 14:35:59,781 | INFO     | sum of deviations: 12914784873214.459
[2025-12-27 09:36:31] 2025-12-27 14:35:59,781 | INFO     | mean x: 1766765895.6582375
[2025-12-27 09:36:31] 2025-12-27 14:35:59,781 | INFO     | mean y: 3195782.369348659
[2025-12-27 09:36:31] 2025-12-27 14:35:59,781 | INFO     | intersect: -4135521987.0182166
[2025-12-27 09:36:31] 2025-12-27 14:35:59,785 | INFO     | chi2: 0.40486699835973083
[2025-12-27 09:36:31] 2025-12-27 14:35:59,785 | INFO     | current memory leak: 2.34 B/s (using 2610 data points, chi2=0.40)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,788 | INFO     | could have reported an average CPU frequency of 2607 MHz (91 samples)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,788 | INFO     | ..............................
[2025-12-27 09:36:31] 2025-12-27 14:35:59,788 | INFO     | . Timing measurements:
[2025-12-27 09:36:31] 2025-12-27 14:35:59,788 | INFO     | . get job = 0 s
[2025-12-27 09:36:31] 2025-12-27 14:35:59,788 | INFO     | . initial setup = 0 s
[2025-12-27 09:36:31] 2025-12-27 14:35:59,788 | INFO     | . payload setup = 3 s
[2025-12-27 09:36:31] 2025-12-27 14:35:59,789 | INFO     | . stage-in = 0 s
[2025-12-27 09:36:31] 2025-12-27 14:35:59,789 | INFO     | . payload execution = 161044 s
[2025-12-27 09:36:31] 2025-12-27 14:35:59,789 | INFO     | . stage-out = 4 s
[2025-12-27 09:36:31] 2025-12-27 14:35:59,789 | INFO     | . log creation = 1 s
[2025-12-27 09:36:31] 2025-12-27 14:35:59,789 | INFO     | ..............................
[2025-12-27 09:36:31] 2025-12-27 14:35:59,901 | INFO     | 
[2025-12-27 09:36:31] 2025-12-27 14:35:59,901 | INFO     | job summary report
[2025-12-27 09:36:31] 2025-12-27 14:35:59,901 | INFO     | --------------------------------------------------
[2025-12-27 09:36:31] 2025-12-27 14:35:59,901 | INFO     | PanDA job id: 6937249877
[2025-12-27 09:36:31] 2025-12-27 14:35:59,901 | INFO     | task id: 47960988
[2025-12-27 09:36:31] 2025-12-27 14:35:59,901 | INFO     | errors: (none)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | pilot state: finished 
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | transexitcode: 0
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | exeerrorcode: 0
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | exeerrordiag: 
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | exitcode: 0
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | exitmsg: OK
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | cpuconsumptiontime: 410417 s
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | nevents: 1000
[2025-12-27 09:36:31] 2025-12-27 14:35:59,902 | INFO     | neventsw: 0
[2025-12-27 09:36:31] 2025-12-27 14:35:59,903 | INFO     | pid: 21246
[2025-12-27 09:36:31] 2025-12-27 14:35:59,903 | INFO     | pgrp: 21246
[2025-12-27 09:36:31] 2025-12-27 14:35:59,903 | INFO     | corecount: 9
[2025-12-27 09:36:31] 2025-12-27 14:35:59,903 | INFO     | event service: False
[2025-12-27 09:36:31] 2025-12-27 14:35:59,903 | INFO     | sizes: {0: 2284429, 1: 2284628, 3: 2284890, 11: 2284918, 161052: 2382737, 161057: 2391759, 161060: 2391943, 161068: 2392189}
[2025-12-27 09:36:31] 2025-12-27 14:35:59,903 | INFO     | --------------------------------------------------
[2025-12-27 09:36:31] 2025-12-27 14:35:59,903 | INFO     | 
[2025-12-27 09:36:31] 2025-12-27 14:35:59,903 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-27 09:36:31] 2025-12-27 14:35:59,922 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,923 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,923 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,923 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,923 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,923 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,923 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,923 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,924 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,925 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,925 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-27 09:36:31] 2025-12-27 14:35:59,925 | INFO     | job 6937249877 has completed (purged errors)
[2025-12-27 09:36:31] 2025-12-27 14:35:59,925 | INFO     | overall cleanup function is called
[2025-12-27 09:36:31] 2025-12-27 14:36:00,943 | INFO     | --- collectZombieJob: --- 10, [21246]
[2025-12-27 09:36:31] 2025-12-27 14:36:00,944 | INFO     | zombie collector waiting for pid 21246
[2025-12-27 09:36:31] 2025-12-27 14:36:00,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-27 09:36:31] 2025-12-27 14:36:00,944 | INFO     | collected zombie processes
[2025-12-27 09:36:31] 2025-12-27 14:36:00,944 | INFO     | will attempt to kill all subprocesses of pid=21246
[2025-12-27 09:36:31] 2025-12-27 14:36:01,157 | INFO     | process IDs to be killed: [21246] (in reverse order)
[2025-12-27 09:36:31] 2025-12-27 14:36:01,224 | WARNING  | found no corresponding commands to process id(s)
[2025-12-27 09:36:31] 2025-12-27 14:36:01,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-27 09:36:31] 2025-12-27 14:36:01,232 | INFO     | did not find any defunct processes belonging to 21246
[2025-12-27 09:36:31] 2025-12-27 14:36:01,239 | INFO     | did not find any defunct processes belonging to 21246
[2025-12-27 09:36:31] 2025-12-27 14:36:01,240 | INFO     | ready for new job
[2025-12-27 09:36:31] 2025-12-27 14:36:01,240 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-27 09:36:31] 2025-12-27 14:36:01,251 | INFO     | ***************************************
[2025-12-27 09:36:31] 2025-12-27 14:36:01,251 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-27 09:36:31] 2025-12-27 14:36:01,251 | INFO     | ***************************************
[2025-12-27 09:36:31] 2025-12-27 14:36:01,251 | INFO     | 
[2025-12-27 09:36:31] 2025-12-27 14:36:01,253 | INFO     | architecture information:
[2025-12-27 09:36:31] 2025-12-27 14:36:01,254 | INFO     | executing command: cat /etc/os-release
[2025-12-27 09:36:31] 2025-12-27 14:36:01,269 | INFO     | cat /etc/os-release:
[2025-12-27 09:36:31] NAME="CentOS Linux"
[2025-12-27 09:36:31] VERSION="7 (Core)"
[2025-12-27 09:36:31] ID="centos"
[2025-12-27 09:36:31] ID_LIKE="rhel fedora"
[2025-12-27 09:36:31] VERSION_ID="7"
[2025-12-27 09:36:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-27 09:36:31] ANSI_COLOR="0;31"
[2025-12-27 09:36:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-27 09:36:31] HOME_URL="https://www.centos.org/"
[2025-12-27 09:36:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-27 09:36:31] 
[2025-12-27 09:36:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-27 09:36:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-27 09:36:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-27 09:36:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-27 09:36:31] 
[2025-12-27 09:36:31] 2025-12-27 14:36:01,269 | INFO     | ***************************************
[2025-12-27 09:36:31] 2025-12-27 14:36:01,774 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-27 09:36:31] 2025-12-27 14:36:01,793 | INFO     | sufficient remaining disk space (52586086400 B)
[2025-12-27 09:36:31] 2025-12-27 14:36:01,794 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-27 09:36:31] 2025-12-27 14:36:01,794 | INFO     | current server update state: UPDATING_FINAL
[2025-12-27 09:36:31] 2025-12-27 14:36:01,794 | INFO     | update_server=False
[2025-12-27 09:36:31] 2025-12-27 14:36:01,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-27 09:36:31] 2025-12-27 14:36:01,794 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-27 09:36:31] 2025-12-27 14:36:01,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-27 09:36:31] 2025-12-27 14:36:01,795 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-27 09:36:31] 2025-12-27 14:36:01,795 | INFO     | aborting loop
[2025-12-27 09:36:31] 2025-12-27 14:36:02,470 | INFO     | all payload control threads have been joined
[2025-12-27 09:36:31] 2025-12-27 14:36:02,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-27 09:36:31] 2025-12-27 14:36:02,604 | INFO     | all data control threads have been joined
[2025-12-27 09:36:31] 2025-12-27 14:36:02,800 | INFO     | [job] retrieve thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:02,800 | INFO     | [job] queue monitor thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:02,801 | INFO     | [job] job monitor thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:02,904 | INFO     | [payload] execute_payloads thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:02,987 | INFO     | [job] create_data_payload thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:03,418 | INFO     | [data] copytool_in thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:03,475 | INFO     | all job control threads have been joined
[2025-12-27 09:36:31] 2025-12-27 14:36:03,476 | INFO     | [payload] control thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:03,536 | INFO     | [job] validate thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:03,557 | INFO     | [payload] failed_post thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:03,609 | INFO     | [data] control thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:03,799 | INFO     | [data] copytool_out thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:03,931 | INFO     | [payload] validate_pre thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:04,182 | INFO     | [payload] validate_post thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:04,480 | INFO     | [job] control thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:06,589 | INFO     | [data] queue_monitor thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:10,713 | INFO     | [monitor] cgroup control has ended
[2025-12-27 09:36:31] 2025-12-27 14:36:12,173 | INFO     | job.realtimelogging is not enabled
[2025-12-27 09:36:31] 2025-12-27 14:36:13,177 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-27 09:36:31] 2025-12-27 14:36:13,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917345838912)>', '<ExcThread(monitor, started 139916990203648)>']
[2025-12-27 09:36:31] 2025-12-27 14:36:18,317 | INFO     | all workflow threads have been joined
[2025-12-27 09:36:31] 2025-12-27 14:36:18,317 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-27 09:36:31] 2025-12-27 14:36:18,318 | INFO     | traces error code: 0
[2025-12-27 09:36:31] 2025-12-27 14:36:18,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-27 09:36:31] 2025-12-27 14:36:31,377 | INFO     | PID=13973 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-27 09:36:31] 2025-12-27 14:36:31,378 | INFO     | .. there are 6 such processes running
[2025-12-27 09:36:31] 2025-12-27 14:36:31,378 | INFO     | found 0 job(s) in 20 queues
[2025-12-27 09:36:31] 2025-12-27 14:36:31,379 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-27 09:36:31] 2025-12-27 14:36:31,379 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-27 09:36:31] 2025-12-27 14:36:31,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-27 09:36:31] 2025-12-27 14:36:31,379 | INFO     | [monitor] control thread has ended
[2025-12-27 09:36:31] 2025-12-27 14:36:31,588 [wrapper] ==== pilot stdout END ====
[2025-12-27 09:36:31] 2025-12-27 14:36:31,590 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-27 09:36:31] 2025-12-27 14:36:31,593 [wrapper] pilotpid: 13973
[2025-12-27 09:36:31] 2025-12-27 14:36:31,596 [wrapper] Pilot exit status: 0
[2025-12-27 09:36:31] 2025-12-27 14:36:31,606 [wrapper] pandaids: 6937249877 6937249877
[2025-12-27 09:36:31] 2025-12-27 14:36:31,649 [wrapper] cleanup supervisor_pilot 3866428 13974
[2025-12-27 09:36:31] 2025-12-27 14:36:31,652 [wrapper] Test setup, not cleaning
[2025-12-27 09:36:31] 2025-12-27 14:36:31,655 [wrapper] apfmon messages muted
[2025-12-27 09:36:31] 2025-12-27 14:36:31,658 [wrapper] ==== wrapper stdout END ====
[2025-12-27 09:36:31] 2025-12-27 14:36:31,660 [wrapper] ==== wrapper stderr END ====
[2025-12-27 09:36:31]  *** Error codes and diagnostics ***
[2025-12-27 09:36:31]     "exeErrorCode": 0,
[2025-12-27 09:36:31]     "exeErrorDiag": "",
[2025-12-27 09:36:31]     "pilotErrorCode": 0,
[2025-12-27 09:36:31]     "pilotErrorDiag": "",
[2025-12-27 09:36:31]  *** Listing of results directory ***
[2025-12-27 09:36:31] total 1851096
[2025-12-27 09:36:31] drwx------. 5 boincer umatlas       4096 Dec  3 09:30 pilot3
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas     579449 Dec 19 19:14 pilot3.tar.gz
[2025-12-27 09:36:31] -rwx------. 1 boincer umatlas      36322 Dec 19 19:16 runpilot2-wrapper.sh
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas       5112 Dec 19 19:20 queuedata.json
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas        100 Dec 24 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-27 09:36:31] -rwxr-xr-x. 1 boincer umatlas       7986 Dec 24 20:11 run_atlas
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas        105 Dec 24 20:11 job.xml
[2025-12-27 09:36:31] -rw-r--r--. 3 boincer umatlas  416218389 Dec 24 20:11 EVNT.47960986._000100.pool.root.1
[2025-12-27 09:36:31] -rw-r--r--. 3 boincer umatlas  416218389 Dec 24 20:11 ATLAS.root_0
[2025-12-27 09:36:31] -rw-r--r--. 2 boincer umatlas      15847 Dec 24 20:11 start_atlas.sh
[2025-12-27 09:36:31] drwxrwx--x. 2 boincer umatlas       4096 Dec 24 20:11 shared
[2025-12-27 09:36:31] -rw-r--r--. 2 boincer umatlas     592595 Dec 24 20:11 input.tar.gz
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas          0 Dec 24 20:11 boinc_lockfile
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas       2876 Dec 25 12:51 pandaJob.out
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas         57 Dec 25 12:51 setup.sh.local
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas     989264 Dec 25 12:51 agis_schedconf.cvmfs.json
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas        534 Dec 27 09:24 boinc_task_state.xml
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas       6659 Dec 27 09:28 init_data.xml
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas 1011786077 Dec 27 09:35 HITS.47960988._000492.pool.root.1
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas       1070 Dec 27 09:35 memory_monitor_summary.json
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas    1516240 Dec 27 09:35 agis_ddmendpoints.agis.ALL.json
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas    3391648 Dec 27 09:35 log.47960988._000492.job.log.tgz.1
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas       8657 Dec 27 09:35 heartbeat.json
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas       8192 Dec 27 09:36 boinc_mmap_file
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas        820 Dec 27 09:36 pilotlog.txt
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas         96 Dec 27 09:36 pilot_heartbeat.json
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas   20293277 Dec 27 09:36 log.47960988._000492.job.log.1
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas        353 Dec 27 09:36 output.list
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas         30 Dec 27 09:36 wrapper_checkpoint.txt
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas        620 Dec 27 09:36 runtime_log
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas   23705600 Dec 27 09:36 result.tar.gz
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas       9424 Dec 27 09:36 runtime_log.err
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas        791 Dec 27 09:36 GEvLDmOpzq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8EhKDmnTzKOm.diag
[2025-12-27 09:36:31] -rw-r--r--. 1 boincer umatlas      23317 Dec 27 09:36 stderr.txt
[2025-12-27 09:36:31] HITS file was successfully produced:
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas 1011786077 Dec 27 09:35 shared/HITS.pool.root.1
[2025-12-27 09:36:31]  *** Contents of shared directory: ***
[2025-12-27 09:36:31] total 1418296
[2025-12-27 09:36:31] -rw-r--r--. 3 boincer umatlas  416218389 Dec 24 20:11 ATLAS.root_0
[2025-12-27 09:36:31] -rw-r--r--. 2 boincer umatlas      15847 Dec 24 20:11 start_atlas.sh
[2025-12-27 09:36:31] -rw-r--r--. 2 boincer umatlas     592595 Dec 24 20:11 input.tar.gz
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas 1011786077 Dec 27 09:35 HITS.pool.root.1
[2025-12-27 09:36:31] -rw-------. 1 boincer umatlas   23705600 Dec 27 09:36 result.tar.gz
09:36:33 (9540): run_atlas exited; CPU time 412616.716796
09:36:33 (9540): called boinc_finish(0)

</stderr_txt>
]]>

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