Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:11:52 (10163): wrapper (7.7.26015): starting
20:11:52 (10163): wrapper: running run_atlas (--nthreads 8)
[2025-12-24 20:11:52] Arguments: --nthreads 8
[2025-12-24 20:11:52] Threads: 8
[2025-12-24 20:11:52] Checking for CVMFS
[2025-12-24 20:11:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-24 20:11:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-24 20:11:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-24 20:11:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-24 20:11:53] 2.11.2.0 2877 100122 88248 154387 3 1 18239294 20275201 1 130560 0 27725644 99.886 5304290 30661 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-24 20:11:53] CVMFS is ok
[2025-12-24 20:11:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-24 20:11:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-24 20:11:53] Further information can be found at the LHC@home message board.
[2025-12-24 20:11:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-24 20:11:53] Checking for apptainer binary...
[2025-12-24 20:11:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-24 20:11:53] Running /usr/bin/apptainer --version
[2025-12-24 20:11:53] apptainer version 1.3.2-1.el7
[2025-12-24 20:11:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-24 20:11:55] c-204-32.aglt2.org
[2025-12-24 20:11:55] apptainer works
[2025-12-24 20:11:55] Set ATHENA_PROC_NUMBER=8
[2025-12-24 20:11:55] Set ATHENA_CORE_NUMBER=8
[2025-12-24 20:11:55] Starting ATLAS job with PandaID=6937249875
[2025-12-24 20:11:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:29:00 (32497): wrapper (7.7.26015): starting
20:29:00 (32497): wrapper: running run_atlas (--nthreads 8)
[2025-12-24 20:29:00] Arguments: --nthreads 8
[2025-12-24 20:29:00] Threads: 8
[2025-12-24 20:29:00] This job has been restarted, cleaning up previous attempt
[2025-12-24 20:29:00] Checking for CVMFS
[2025-12-24 20:29:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-24 20:29:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-24 20:29:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-24 20:29:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-24 20:29:01] 2.11.2.0 2877 100139 83488 154388 2 49 18267538 20275200 1 130560 0 27789848 99.886 5309682 30665 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-24 20:29:01] CVMFS is ok
[2025-12-24 20:29:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-24 20:29:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-24 20:29:01] Further information can be found at the LHC@home message board.
[2025-12-24 20:29:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-24 20:29:01] Checking for apptainer binary...
[2025-12-24 20:29:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-24 20:29:01] Running /usr/bin/apptainer --version
[2025-12-24 20:29:01] apptainer version 1.3.2-1.el7
[2025-12-24 20:29:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-24 20:29:03] c-204-32.aglt2.org
[2025-12-24 20:29:03] apptainer works
[2025-12-24 20:29:03] Set ATHENA_PROC_NUMBER=8
[2025-12-24 20:29:03] Set ATHENA_CORE_NUMBER=8
[2025-12-24 20:29:03] Starting ATLAS job with PandaID=6937249875
[2025-12-24 20:29:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-25 12:39:03]  *** The last 200 lines of the pilot log: ***
[2025-12-25 12:39:03] 2025-12-25 17:38:46,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-25 12:39:03] 2025-12-25 17:38:48,108 | INFO     | time since job start (58169s) is within the limit (174528.0s)
[2025-12-25 12:39:03] 2025-12-25 17:38:49,070 | INFO     | monitor loop #4263: job 0:6937249875 is in state 'finished'
[2025-12-25 12:39:03] 2025-12-25 17:38:49,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,052 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-25 12:39:03] 2025-12-25 17:38:50,056 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1662.5
[2025-12-25 12:39:03] 2025-12-25 17:38:50,059 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6937249875/memory_monitor_summary.json (trf name=prmon)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,060 | INFO     | extracted standard info from prmon json
[2025-12-25 12:39:03] 2025-12-25 17:38:50,060 | INFO     | extracted standard memory fields from prmon json
[2025-12-25 12:39:03] 2025-12-25 17:38:50,060 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-25 12:39:03] 2025-12-25 17:38:50,078 | INFO     | fitting pss+swap vs Time
[2025-12-25 12:39:03] 2025-12-25 17:38:50,079 | INFO     | sum of square deviations: 268384284548.5038
[2025-12-25 12:39:03] 2025-12-25 17:38:50,098 | INFO     | sum of deviations: 1400516937283.3481
[2025-12-25 12:39:03] 2025-12-25 17:38:50,098 | INFO     | mean x: 1766655228.6285415
[2025-12-25 12:39:03] 2025-12-25 17:38:50,098 | INFO     | mean y: 3192576.1930745016
[2025-12-25 12:39:03] 2025-12-25 17:38:50,098 | INFO     | intersect: -9215791963.817509
[2025-12-25 12:39:03] 2025-12-25 17:38:50,099 | INFO     | chi2: 5.541134212388354
[2025-12-25 12:39:03] 2025-12-25 17:38:50,100 | INFO     | sum of square deviations: 264182286126.51785
[2025-12-25 12:39:03] 2025-12-25 17:38:50,118 | INFO     | sum of deviations: 1725565564659.55
[2025-12-25 12:39:03] 2025-12-25 17:38:50,118 | INFO     | mean x: 1766655076.1318564
[2025-12-25 12:39:03] 2025-12-25 17:38:50,118 | INFO     | mean y: 3204369.299578059
[2025-12-25 12:39:03] 2025-12-25 17:38:50,118 | INFO     | intersect: -11536097560.066721
[2025-12-25 12:39:03] 2025-12-25 17:38:50,119 | INFO     | chi2: 2.8628643642311093
[2025-12-25 12:39:03] 2025-12-25 17:38:50,120 | INFO     | current chi2=2.8628643642311093 (change=48.33432552796532 %)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,121 | INFO     | sum of square deviations: 260024381554.5113
[2025-12-25 12:39:03] 2025-12-25 17:38:50,126 | INFO     | time since job start (58171s) is within the limit (174528.0s)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,140 | INFO     | sum of deviations: 1832987995179.1033
[2025-12-25 12:39:03] 2025-12-25 17:38:50,140 | INFO     | mean x: 1766654923.6352067
[2025-12-25 12:39:03] 2025-12-25 17:38:50,141 | INFO     | mean y: 3208305.2619300107
[2025-12-25 12:39:03] 2025-12-25 17:38:50,141 | INFO     | intersect: -12450459490.38101
[2025-12-25 12:39:03] 2025-12-25 17:38:50,142 | INFO     | chi2: 2.4539849341594966
[2025-12-25 12:39:03] 2025-12-25 17:38:50,142 | INFO     | current chi2=2.4539849341594966 (change=14.282179595379718 %)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,142 | INFO     | right removable region: 942
[2025-12-25 12:39:03] 2025-12-25 17:38:50,143 | INFO     | sum of square deviations: 264181978625.78073
[2025-12-25 12:39:03] 2025-12-25 17:38:50,161 | INFO     | sum of deviations: 1106634537217.0078
[2025-12-25 12:39:03] 2025-12-25 17:38:50,161 | INFO     | mean x: 1766655381.1308017
[2025-12-25 12:39:03] 2025-12-25 17:38:50,161 | INFO     | mean y: 3203228.7257383964
[2025-12-25 12:39:03] 2025-12-25 17:38:50,161 | INFO     | intersect: -7397157198.16386
[2025-12-25 12:39:03] 2025-12-25 17:38:50,162 | INFO     | chi2: 3.276606247645789
[2025-12-25 12:39:03] 2025-12-25 17:38:50,163 | INFO     | current chi2=3.276606247645789 (change=40.86758916035174 %)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,164 | INFO     | sum of square deviations: 260023824625.31277
[2025-12-25 12:39:03] 2025-12-25 17:38:50,182 | INFO     | sum of deviations: 1041155084811.1086
[2025-12-25 12:39:03] 2025-12-25 17:38:50,182 | INFO     | mean x: 1766655533.6320255
[2025-12-25 12:39:03] 2025-12-25 17:38:50,182 | INFO     | mean y: 3205629.493107105
[2025-12-25 12:39:03] 2025-12-25 17:38:50,182 | INFO     | intersect: -7070616911.964919
[2025-12-25 12:39:03] 2025-12-25 17:38:50,183 | INFO     | chi2: 3.2234660473953354
[2025-12-25 12:39:03] 2025-12-25 17:38:50,183 | INFO     | current chi2=3.2234660473953354 (change=1.6218061077260735 %)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,183 | INFO     | left removable region: 20
[2025-12-25 12:39:03] 2025-12-25 17:38:50,184 | INFO     | sum of square deviations: 243036377874.3873
[2025-12-25 12:39:03] 2025-12-25 17:38:50,202 | INFO     | sum of deviations: 1388276514511.3757
[2025-12-25 12:39:03] 2025-12-25 17:38:50,202 | INFO     | mean x: 1766655503.1420825
[2025-12-25 12:39:03] 2025-12-25 17:38:50,202 | INFO     | mean y: 3224625.3253796096
[2025-12-25 12:39:03] 2025-12-25 17:38:50,202 | INFO     | intersect: -10088294865.275545
[2025-12-25 12:39:03] 2025-12-25 17:38:50,203 | INFO     | chi2: 0.10273783364128362
[2025-12-25 12:39:03] 2025-12-25 17:38:50,203 | INFO     | current memory leak: 5.71 B/s (using 922 data points, chi2=0.10)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,204 | INFO     | could have reported an average CPU frequency of 2168 MHz (35 samples)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,204 | INFO     | ..............................
[2025-12-25 12:39:03] 2025-12-25 17:38:50,204 | INFO     | . Timing measurements:
[2025-12-25 12:39:03] 2025-12-25 17:38:50,204 | INFO     | . get job = 0 s
[2025-12-25 12:39:03] 2025-12-25 17:38:50,204 | INFO     | . initial setup = 1 s
[2025-12-25 12:39:03] 2025-12-25 17:38:50,204 | INFO     | . payload setup = 9 s
[2025-12-25 12:39:03] 2025-12-25 17:38:50,205 | INFO     | . stage-in = 0 s
[2025-12-25 12:39:03] 2025-12-25 17:38:50,205 | INFO     | . payload execution = 58126 s
[2025-12-25 12:39:03] 2025-12-25 17:38:50,205 | INFO     | . stage-out = 3 s
[2025-12-25 12:39:03] 2025-12-25 17:38:50,205 | INFO     | . log creation = 0 s
[2025-12-25 12:39:03] 2025-12-25 17:38:50,205 | INFO     | ..............................
[2025-12-25 12:39:03] 2025-12-25 17:38:50,296 | INFO     | 
[2025-12-25 12:39:03] 2025-12-25 17:38:50,297 | INFO     | job summary report
[2025-12-25 12:39:03] 2025-12-25 17:38:50,297 | INFO     | --------------------------------------------------
[2025-12-25 12:39:03] 2025-12-25 17:38:50,297 | INFO     | PanDA job id: 6937249875
[2025-12-25 12:39:03] 2025-12-25 17:38:50,297 | INFO     | task id: 47960988
[2025-12-25 12:39:03] 2025-12-25 17:38:50,297 | INFO     | errors: (none)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,298 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-25 12:39:03] 2025-12-25 17:38:50,298 | INFO     | pilot state: finished 
[2025-12-25 12:39:03] 2025-12-25 17:38:50,298 | INFO     | transexitcode: 0
[2025-12-25 12:39:03] 2025-12-25 17:38:50,298 | INFO     | exeerrorcode: 0
[2025-12-25 12:39:03] 2025-12-25 17:38:50,298 | INFO     | exeerrordiag: 
[2025-12-25 12:39:03] 2025-12-25 17:38:50,298 | INFO     | exitcode: 0
[2025-12-25 12:39:03] 2025-12-25 17:38:50,299 | INFO     | exitmsg: OK
[2025-12-25 12:39:03] 2025-12-25 17:38:50,299 | INFO     | cpuconsumptiontime: 453592 s
[2025-12-25 12:39:03] 2025-12-25 17:38:50,299 | INFO     | nevents: 1000
[2025-12-25 12:39:03] 2025-12-25 17:38:50,299 | INFO     | neventsw: 0
[2025-12-25 12:39:03] 2025-12-25 17:38:50,299 | INFO     | pid: 10456
[2025-12-25 12:39:03] 2025-12-25 17:38:50,299 | INFO     | pgrp: 10456
[2025-12-25 12:39:03] 2025-12-25 17:38:50,300 | INFO     | corecount: 8
[2025-12-25 12:39:03] 2025-12-25 17:38:50,300 | INFO     | event service: False
[2025-12-25 12:39:03] 2025-12-25 17:38:50,300 | INFO     | sizes: {0: 2284429, 1: 2284628, 7: 2284890, 11: 2284918, 58139: 2336965, 58140: 2336964, 58144: 2346142, 58146: 2346198, 58153: 2346444}
[2025-12-25 12:39:03] 2025-12-25 17:38:50,300 | INFO     | --------------------------------------------------
[2025-12-25 12:39:03] 2025-12-25 17:38:50,300 | INFO     | 
[2025-12-25 12:39:03] 2025-12-25 17:38:50,301 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-25 12:39:03] 2025-12-25 17:38:50,329 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,329 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,329 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,330 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-25 12:39:03] 2025-12-25 17:38:50,333 | INFO     | job 6937249875 has completed (purged errors)
[2025-12-25 12:39:03] 2025-12-25 17:38:50,333 | INFO     | overall cleanup function is called
[2025-12-25 12:39:03] 2025-12-25 17:38:51,349 | INFO     | --- collectZombieJob: --- 10, [10456]
[2025-12-25 12:39:03] 2025-12-25 17:38:51,349 | INFO     | zombie collector waiting for pid 10456
[2025-12-25 12:39:03] 2025-12-25 17:38:51,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-25 12:39:03] 2025-12-25 17:38:51,357 | INFO     | collected zombie processes
[2025-12-25 12:39:03] 2025-12-25 17:38:51,357 | INFO     | will attempt to kill all subprocesses of pid=10456
[2025-12-25 12:39:03] 2025-12-25 17:38:51,454 | INFO     | process IDs to be killed: [10456] (in reverse order)
[2025-12-25 12:39:03] 2025-12-25 17:38:51,510 | WARNING  | found no corresponding commands to process id(s)
[2025-12-25 12:39:03] 2025-12-25 17:38:51,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-25 12:39:03] 2025-12-25 17:38:51,516 | INFO     | did not find any defunct processes belonging to 10456
[2025-12-25 12:39:03] 2025-12-25 17:38:51,518 | INFO     | did not find any defunct processes belonging to 10456
[2025-12-25 12:39:03] 2025-12-25 17:38:51,519 | INFO     | ready for new job
[2025-12-25 12:39:03] 2025-12-25 17:38:51,519 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-25 12:39:03] 2025-12-25 17:38:51,523 | INFO     | ***************************************
[2025-12-25 12:39:03] 2025-12-25 17:38:51,523 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-25 12:39:03] 2025-12-25 17:38:51,523 | INFO     | ***************************************
[2025-12-25 12:39:03] 2025-12-25 17:38:51,523 | INFO     | 
[2025-12-25 12:39:03] 2025-12-25 17:38:51,524 | INFO     | architecture information:
[2025-12-25 12:39:03] 2025-12-25 17:38:51,525 | INFO     | executing command: cat /etc/os-release
[2025-12-25 12:39:03] 2025-12-25 17:38:51,544 | INFO     | cat /etc/os-release:
[2025-12-25 12:39:03] NAME="CentOS Linux"
[2025-12-25 12:39:03] VERSION="7 (Core)"
[2025-12-25 12:39:03] ID="centos"
[2025-12-25 12:39:03] ID_LIKE="rhel fedora"
[2025-12-25 12:39:03] VERSION_ID="7"
[2025-12-25 12:39:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-25 12:39:03] ANSI_COLOR="0;31"
[2025-12-25 12:39:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-25 12:39:03] HOME_URL="https://www.centos.org/"
[2025-12-25 12:39:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-25 12:39:03] 
[2025-12-25 12:39:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-25 12:39:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-25 12:39:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-25 12:39:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-25 12:39:03] 
[2025-12-25 12:39:03] 2025-12-25 17:38:51,545 | INFO     | ***************************************
[2025-12-25 12:39:03] 2025-12-25 17:38:52,048 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-25 12:39:03] 2025-12-25 17:38:52,068 | INFO     | sufficient remaining disk space (17345544192 B)
[2025-12-25 12:39:03] 2025-12-25 17:38:52,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-25 12:39:03] 2025-12-25 17:38:52,069 | INFO     | current server update state: UPDATING_FINAL
[2025-12-25 12:39:03] 2025-12-25 17:38:52,069 | INFO     | update_server=False
[2025-12-25 12:39:03] 2025-12-25 17:38:52,069 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-25 12:39:03] 2025-12-25 17:38:52,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-25 12:39:03] 2025-12-25 17:38:52,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-25 12:39:03] 2025-12-25 17:38:52,070 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-25 12:39:03] 2025-12-25 17:38:52,071 | INFO     | found 0 job(s) in 20 queues
[2025-12-25 12:39:03] 2025-12-25 17:38:52,071 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-25 12:39:03] 2025-12-25 17:38:52,071 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-25 12:39:03] 2025-12-25 17:38:52,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-25 12:39:03] 2025-12-25 17:38:52,593 | INFO     | aborting loop
[2025-12-25 12:39:03] 2025-12-25 17:38:53,047 | INFO     | all data control threads have been joined
[2025-12-25 12:39:03] 2025-12-25 17:38:53,075 | INFO     | [job] retrieve thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,075 | INFO     | [job] queue monitor thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,254 | INFO     | all job control threads have been joined
[2025-12-25 12:39:03] 2025-12-25 17:38:53,254 | INFO     | [job] create_data_payload thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,295 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,308 | INFO     | [payload] validate_pre thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-25 12:39:03] 2025-12-25 17:38:53,346 | INFO     | [payload] failed_post thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,448 | INFO     | all payload control threads have been joined
[2025-12-25 12:39:03] 2025-12-25 17:38:53,526 | INFO     | [data] copytool_in thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,599 | INFO     | [job] job monitor thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,699 | INFO     | [payload] execute_payloads thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,873 | INFO     | [payload] validate_post thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:53,887 | INFO     | [job] validate thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:54,053 | INFO     | [data] control thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:54,076 | INFO     | [data] copytool_out thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:54,259 | INFO     | [job] control thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:54,453 | INFO     | [payload] control thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:55,916 | INFO     | [monitor] cgroup control has ended
[2025-12-25 12:39:03] 2025-12-25 17:38:57,326 | INFO     | [data] queue_monitor thread has finished
[2025-12-25 12:39:03] 2025-12-25 17:38:58,274 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140391747675968)>', '<ExcThread(monitor, started 140390803961600)>']
[2025-12-25 12:39:03] 2025-12-25 17:38:59,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-25 12:39:03] 2025-12-25 17:38:59,103 | INFO     | [monitor] control thread has ended
[2025-12-25 12:39:03] 2025-12-25 17:39:03,295 | INFO     | all workflow threads have been joined
[2025-12-25 12:39:03] 2025-12-25 17:39:03,296 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-25 12:39:03] 2025-12-25 17:39:03,296 | INFO     | traces error code: 0
[2025-12-25 12:39:03] 2025-12-25 17:39:03,297 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-25 12:39:03] 2025-12-25 17:39:03,426 [wrapper] ==== pilot stdout END ====
[2025-12-25 12:39:03] 2025-12-25 17:39:03,430 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-25 12:39:03] 2025-12-25 17:39:03,435 [wrapper] pilotpid: 3906
[2025-12-25 12:39:03] 2025-12-25 17:39:03,440 [wrapper] Pilot exit status: 0
[2025-12-25 12:39:03] 2025-12-25 17:39:03,457 [wrapper] pandaids: 6937249875 6937249875
[2025-12-25 12:39:03] 2025-12-25 17:39:03,507 [wrapper] cleanup supervisor_pilot 27638 3907
[2025-12-25 12:39:03] 2025-12-25 17:39:03,512 [wrapper] Test setup, not cleaning
[2025-12-25 12:39:03] 2025-12-25 17:39:03,517 [wrapper] apfmon messages muted
[2025-12-25 12:39:03] 2025-12-25 17:39:03,522 [wrapper] ==== wrapper stdout END ====
[2025-12-25 12:39:03] 2025-12-25 17:39:03,526 [wrapper] ==== wrapper stderr END ====
[2025-12-25 12:39:03]  *** Error codes and diagnostics ***
[2025-12-25 12:39:03]     "exeErrorCode": 0,
[2025-12-25 12:39:03]     "exeErrorDiag": "",
[2025-12-25 12:39:03]     "pilotErrorCode": 0,
[2025-12-25 12:39:03]     "pilotErrorDiag": "",
[2025-12-25 12:39:03]  *** Listing of results directory ***
[2025-12-25 12:39:03] total 1802300
[2025-12-25 12:39:03] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas    579449 Dec 19 19:14 pilot3.tar.gz
[2025-12-25 12:39:03] -rwx------ 1 boincer umatlas     36322 Dec 19 19:16 runpilot2-wrapper.sh
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas      5112 Dec 19 19:20 queuedata.json
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas       100 Dec 24 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-25 12:39:03] -rwxr-xr-x 1 boincer umatlas      7986 Dec 24 20:11 run_atlas
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas       105 Dec 24 20:11 job.xml
[2025-12-25 12:39:03] -rw-r--r-- 3 boincer umatlas 417284504 Dec 24 20:11 EVNT.47960986._000099.pool.root.1
[2025-12-25 12:39:03] -rw-r--r-- 3 boincer umatlas 417284504 Dec 24 20:11 ATLAS.root_0
[2025-12-25 12:39:03] -rw-r--r-- 2 boincer umatlas    592598 Dec 24 20:11 input.tar.gz
[2025-12-25 12:39:03] -rw-r--r-- 2 boincer umatlas     15847 Dec 24 20:11 start_atlas.sh
[2025-12-25 12:39:03] drwxrwx--x 2 boincer umatlas      4096 Dec 24 20:11 shared
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas         0 Dec 24 20:11 boinc_lockfile
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas      2876 Dec 24 20:29 pandaJob.out
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas        57 Dec 24 20:29 setup.sh.local
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas    989242 Dec 24 20:29 agis_schedconf.cvmfs.json
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas       533 Dec 25 12:28 boinc_task_state.xml
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas      5911 Dec 25 12:28 init_data.xml
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas 986792367 Dec 25 12:37 HITS.47960988._000490.pool.root.1
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas      1061 Dec 25 12:38 memory_monitor_summary.json
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas   1516240 Dec 25 12:38 agis_ddmendpoints.agis.ALL.json
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas   2147050 Dec 25 12:38 log.47960988._000490.job.log.tgz.1
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas        96 Dec 25 12:38 pilot_heartbeat.json
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas      8660 Dec 25 12:38 heartbeat.json
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas      8192 Dec 25 12:39 boinc_mmap_file
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas        29 Dec 25 12:39 wrapper_checkpoint.txt
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas      4552 Dec 25 12:39 pilotlog.txt
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas   7982774 Dec 25 12:39 log.47960988._000490.job.log.1
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas       353 Dec 25 12:39 output.list
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas       620 Dec 25 12:39 runtime_log
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas  10147840 Dec 25 12:39 result.tar.gz
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas       793 Dec 25 12:39 K9fLDmOpzq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7EhKDmwTTH2n.diag
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas      9428 Dec 25 12:39 runtime_log.err
[2025-12-25 12:39:03] -rw-r--r-- 1 boincer umatlas     23322 Dec 25 12:39 stderr.txt
[2025-12-25 12:39:03] HITS file was successfully produced:
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas 986792367 Dec 25 12:37 shared/HITS.pool.root.1
[2025-12-25 12:39:03]  *** Contents of shared directory: ***
[2025-12-25 12:39:03] total 1381692
[2025-12-25 12:39:03] -rw-r--r-- 3 boincer umatlas 417284504 Dec 24 20:11 ATLAS.root_0
[2025-12-25 12:39:03] -rw-r--r-- 2 boincer umatlas    592598 Dec 24 20:11 input.tar.gz
[2025-12-25 12:39:03] -rw-r--r-- 2 boincer umatlas     15847 Dec 24 20:11 start_atlas.sh
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas 986792367 Dec 25 12:37 HITS.pool.root.1
[2025-12-25 12:39:03] -rw------- 1 boincer umatlas  10147840 Dec 25 12:39 result.tar.gz
12:39:05 (32497): run_atlas exited; CPU time 451127.906882
12:39:05 (32497): called boinc_finish(0)

</stderr_txt>
]]>

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