Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:02:27 (27089): wrapper (7.7.26015): starting
15:02:27 (27089): wrapper: running run_atlas (--nthreads 8)
[2025-12-24 15:02:27] Arguments: --nthreads 8
[2025-12-24 15:02:27] Threads: 8
[2025-12-24 15:02:27] Checking for CVMFS
[2025-12-24 15:02:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-24 15:02:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-24 15:02:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-24 15:02:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-24 15:02:28] 2.11.2.0 13817 586133 315236 154380 2 19 11649004 18432000 140 130560 8 303906570 99.661 267766108 24567 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-12-24 15:02:28] CVMFS is ok
[2025-12-24 15:02:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-24 15:02:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-24 15:02:28] Further information can be found at the LHC@home message board.
[2025-12-24 15:02:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-24 15:02:28] Checking for apptainer binary...
[2025-12-24 15:02:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-24 15:02:28] Running /usr/bin/apptainer --version
[2025-12-24 15:02:28] apptainer version 1.3.2-1.el7
[2025-12-24 15:02:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-24 15:02:28] c-9-29.aglt2.org
[2025-12-24 15:02:28] apptainer works
[2025-12-24 15:02:28] Set ATHENA_PROC_NUMBER=8
[2025-12-24 15:02:28] Set ATHENA_CORE_NUMBER=8
[2025-12-24 15:02:28] Starting ATLAS job with PandaID=6937252066
[2025-12-24 15:02:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-25 08:50:38]  *** The last 200 lines of the pilot log: ***
[2025-12-25 08:50:38] 2025-12-25 13:50:05,519 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-25 08:50:38] 2025-12-25 13:50:05,537 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2403.1974687500006
[2025-12-25 08:50:38] 2025-12-25 13:50:05,544 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6937252066/memory_monitor_summary.json (trf name=prmon)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,545 | INFO     | extracted standard info from prmon json
[2025-12-25 08:50:38] 2025-12-25 13:50:05,546 | INFO     | extracted standard memory fields from prmon json
[2025-12-25 08:50:38] 2025-12-25 13:50:05,546 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-25 08:50:38] 2025-12-25 13:50:05,571 | INFO     | fitting pss+swap vs Time
[2025-12-25 08:50:38] 2025-12-25 13:50:05,572 | INFO     | sum of square deviations: 358959920674.49915
[2025-12-25 08:50:38] 2025-12-25 13:50:05,595 | INFO     | sum of deviations: 1957542567021.0894
[2025-12-25 08:50:38] 2025-12-25 13:50:05,595 | INFO     | mean x: 1766638572.5009525
[2025-12-25 08:50:38] 2025-12-25 13:50:05,595 | INFO     | mean y: 2889574.4085714286
[2025-12-25 08:50:38] 2025-12-25 13:50:05,595 | INFO     | intersect: -9631250637.439505
[2025-12-25 08:50:38] 2025-12-25 13:50:05,597 | INFO     | chi2: 4.990316785494706
[2025-12-25 08:50:38] 2025-12-25 13:50:05,598 | INFO     | sum of square deviations: 353856299706.99866
[2025-12-25 08:50:38] 2025-12-25 13:50:05,618 | INFO     | sum of deviations: 2239912931912.063
[2025-12-25 08:50:38] 2025-12-25 13:50:05,618 | INFO     | mean x: 1766638420.000957
[2025-12-25 08:50:38] 2025-12-25 13:50:05,618 | INFO     | mean y: 2898006.933014354
[2025-12-25 08:50:38] 2025-12-25 13:50:05,618 | INFO     | intersect: -11179935946.42439
[2025-12-25 08:50:38] 2025-12-25 13:50:05,619 | INFO     | chi2: 2.8035565410745473
[2025-12-25 08:50:38] 2025-12-25 13:50:05,619 | INFO     | current chi2=2.8035565410745473 (change=43.820068713400886 %)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,620 | INFO     | sum of square deviations: 348801284301.99915
[2025-12-25 08:50:38] 2025-12-25 13:50:05,639 | INFO     | sum of deviations: 2358463779567.9355
[2025-12-25 08:50:38] 2025-12-25 13:50:05,639 | INFO     | mean x: 1766638267.5009615
[2025-12-25 08:50:38] 2025-12-25 13:50:05,639 | INFO     | mean y: 2901578.5663461536
[2025-12-25 08:50:38] 2025-12-25 13:50:05,639 | INFO     | intersect: -11942445394.10186
[2025-12-25 08:50:38] 2025-12-25 13:50:05,640 | INFO     | chi2: 2.250680563853504
[2025-12-25 08:50:38] 2025-12-25 13:50:05,640 | INFO     | current chi2=2.250680563853504 (change=19.720521741613855 %)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,640 | INFO     | right removable region: 1039
[2025-12-25 08:50:38] 2025-12-25 13:50:05,641 | INFO     | sum of square deviations: 353856299096.99866
[2025-12-25 08:50:38] 2025-12-25 13:50:05,658 | INFO     | sum of deviations: 1702048593741.312
[2025-12-25 08:50:38] 2025-12-25 13:50:05,659 | INFO     | mean x: 1766638725.000957
[2025-12-25 08:50:38] 2025-12-25 13:50:05,659 | INFO     | mean y: 2897197.68708134
[2025-12-25 08:50:38] 2025-12-25 13:50:05,659 | INFO     | intersect: -8494634046.52167
[2025-12-25 08:50:38] 2025-12-25 13:50:05,660 | INFO     | chi2: 3.1009306455929044
[2025-12-25 08:50:38] 2025-12-25 13:50:05,660 | INFO     | current chi2=3.1009306455929044 (change=37.861046124239195 %)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,661 | INFO     | sum of square deviations: 348801283081.99915
[2025-12-25 08:50:38] 2025-12-25 13:50:05,677 | INFO     | sum of deviations: 1617354941052.7927
[2025-12-25 08:50:38] 2025-12-25 13:50:05,677 | INFO     | mean x: 1766638877.5009615
[2025-12-25 08:50:38] 2025-12-25 13:50:05,677 | INFO     | mean y: 2899752.2057692306
[2025-12-25 08:50:38] 2025-12-25 13:50:05,677 | INFO     | intersect: -8188819304.373577
[2025-12-25 08:50:38] 2025-12-25 13:50:05,678 | INFO     | chi2: 3.0108003522884905
[2025-12-25 08:50:38] 2025-12-25 13:50:05,678 | INFO     | current chi2=3.0108003522884905 (change=2.906556244091064 %)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,678 | INFO     | left removable region: 20
[2025-12-25 08:50:38] 2025-12-25 13:50:05,679 | INFO     | sum of square deviations: 328095741432.99896
[2025-12-25 08:50:38] 2025-12-25 13:50:05,694 | INFO     | sum of deviations: 1883581502942.3027
[2025-12-25 08:50:38] 2025-12-25 13:50:05,694 | INFO     | mean x: 1766638847.0009813
[2025-12-25 08:50:38] 2025-12-25 13:50:05,694 | INFO     | mean y: 2915914.6947988225
[2025-12-25 08:50:38] 2025-12-25 13:50:05,694 | INFO     | intersect: -10139270753.308332
[2025-12-25 08:50:38] 2025-12-25 13:50:05,695 | INFO     | chi2: 0.19273097343928294
[2025-12-25 08:50:38] 2025-12-25 13:50:05,695 | INFO     | current memory leak: 5.74 B/s (using 1019 data points, chi2=0.19)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,696 | INFO     | could have reported an average CPU frequency of 2985 MHz (39 samples)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,696 | INFO     | ..............................
[2025-12-25 08:50:38] 2025-12-25 13:50:05,696 | INFO     | . Timing measurements:
[2025-12-25 08:50:38] 2025-12-25 13:50:05,696 | INFO     | . get job = 0 s
[2025-12-25 08:50:38] 2025-12-25 13:50:05,696 | INFO     | . initial setup = 2 s
[2025-12-25 08:50:38] 2025-12-25 13:50:05,696 | INFO     | . payload setup = 3 s
[2025-12-25 08:50:38] 2025-12-25 13:50:05,697 | INFO     | . stage-in = 0 s
[2025-12-25 08:50:38] 2025-12-25 13:50:05,697 | INFO     | . payload execution = 64018 s
[2025-12-25 08:50:38] 2025-12-25 13:50:05,697 | INFO     | . stage-out = 3 s
[2025-12-25 08:50:38] 2025-12-25 13:50:05,697 | INFO     | . log creation = 0 s
[2025-12-25 08:50:38] 2025-12-25 13:50:05,697 | INFO     | ..............................
[2025-12-25 08:50:38] 2025-12-25 13:50:05,880 | INFO     | PID=35353 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-25 08:50:38] 2025-12-25 13:50:05,880 | INFO     | .. there are 2 such processes running
[2025-12-25 08:50:38] 2025-12-25 13:50:05,934 | INFO     | 
[2025-12-25 08:50:38] 2025-12-25 13:50:05,934 | INFO     | job summary report
[2025-12-25 08:50:38] 2025-12-25 13:50:05,934 | INFO     | --------------------------------------------------
[2025-12-25 08:50:38] 2025-12-25 13:50:05,935 | INFO     | PanDA job id: 6937252066
[2025-12-25 08:50:38] 2025-12-25 13:50:05,935 | INFO     | task id: 47960988
[2025-12-25 08:50:38] 2025-12-25 13:50:05,935 | INFO     | errors: (none)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-25 08:50:38] 2025-12-25 13:50:05,935 | INFO     | pilot state: finished 
[2025-12-25 08:50:38] 2025-12-25 13:50:05,936 | INFO     | transexitcode: 0
[2025-12-25 08:50:38] 2025-12-25 13:50:05,936 | INFO     | exeerrorcode: 0
[2025-12-25 08:50:38] 2025-12-25 13:50:05,936 | INFO     | exeerrordiag: 
[2025-12-25 08:50:38] 2025-12-25 13:50:05,936 | INFO     | exitcode: 0
[2025-12-25 08:50:38] 2025-12-25 13:50:05,936 | INFO     | exitmsg: OK
[2025-12-25 08:50:38] 2025-12-25 13:50:05,937 | INFO     | cpuconsumptiontime: 506938 s
[2025-12-25 08:50:38] 2025-12-25 13:50:05,937 | INFO     | nevents: 1000
[2025-12-25 08:50:38] 2025-12-25 13:50:05,937 | INFO     | neventsw: 0
[2025-12-25 08:50:38] 2025-12-25 13:50:05,937 | INFO     | pid: 13182
[2025-12-25 08:50:38] 2025-12-25 13:50:05,937 | INFO     | pgrp: 13182
[2025-12-25 08:50:38] 2025-12-25 13:50:05,938 | INFO     | corecount: 8
[2025-12-25 08:50:38] 2025-12-25 13:50:05,938 | INFO     | event service: False
[2025-12-25 08:50:38] 2025-12-25 13:50:05,938 | INFO     | sizes: {0: 2284600, 3: 2284862, 11: 2284890, 64025: 2339989, 64026: 2339988, 64029: 2349222, 64034: 2349412}
[2025-12-25 08:50:38] 2025-12-25 13:50:05,938 | INFO     | --------------------------------------------------
[2025-12-25 08:50:38] 2025-12-25 13:50:05,938 | INFO     | 
[2025-12-25 08:50:38] 2025-12-25 13:50:05,939 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-25 08:50:38] 2025-12-25 13:50:05,967 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,968 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,968 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,968 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,968 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,968 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,969 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,969 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,970 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,970 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,971 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,971 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,971 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-25 08:50:38] 2025-12-25 13:50:05,971 | INFO     | job 6937252066 has completed (purged errors)
[2025-12-25 08:50:38] 2025-12-25 13:50:05,972 | INFO     | overall cleanup function is called
[2025-12-25 08:50:38] 2025-12-25 13:50:06,989 | INFO     | --- collectZombieJob: --- 10, [13182]
[2025-12-25 08:50:38] 2025-12-25 13:50:06,989 | INFO     | zombie collector waiting for pid 13182
[2025-12-25 08:50:38] 2025-12-25 13:50:06,990 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-25 08:50:38] 2025-12-25 13:50:06,990 | INFO     | collected zombie processes
[2025-12-25 08:50:38] 2025-12-25 13:50:06,990 | INFO     | will attempt to kill all subprocesses of pid=13182
[2025-12-25 08:50:38] 2025-12-25 13:50:07,175 | INFO     | process IDs to be killed: [13182] (in reverse order)
[2025-12-25 08:50:38] 2025-12-25 13:50:07,241 | WARNING  | found no corresponding commands to process id(s)
[2025-12-25 08:50:38] 2025-12-25 13:50:07,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-25 08:50:38] 2025-12-25 13:50:07,247 | INFO     | did not find any defunct processes belonging to 13182
[2025-12-25 08:50:38] 2025-12-25 13:50:07,252 | INFO     | did not find any defunct processes belonging to 13182
[2025-12-25 08:50:38] 2025-12-25 13:50:07,252 | INFO     | ready for new job
[2025-12-25 08:50:38] 2025-12-25 13:50:07,253 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-25 08:50:38] 2025-12-25 13:50:07,259 | INFO     | ***************************************
[2025-12-25 08:50:38] 2025-12-25 13:50:07,259 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-25 08:50:38] 2025-12-25 13:50:07,259 | INFO     | ***************************************
[2025-12-25 08:50:38] 2025-12-25 13:50:07,259 | INFO     | 
[2025-12-25 08:50:38] 2025-12-25 13:50:07,261 | INFO     | architecture information:
[2025-12-25 08:50:38] 2025-12-25 13:50:07,261 | INFO     | executing command: cat /etc/os-release
[2025-12-25 08:50:38] 2025-12-25 13:50:07,273 | INFO     | cat /etc/os-release:
[2025-12-25 08:50:38] NAME="CentOS Linux"
[2025-12-25 08:50:38] VERSION="7 (Core)"
[2025-12-25 08:50:38] ID="centos"
[2025-12-25 08:50:38] ID_LIKE="rhel fedora"
[2025-12-25 08:50:38] VERSION_ID="7"
[2025-12-25 08:50:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-25 08:50:38] ANSI_COLOR="0;31"
[2025-12-25 08:50:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-25 08:50:38] HOME_URL="https://www.centos.org/"
[2025-12-25 08:50:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-25 08:50:38] 
[2025-12-25 08:50:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-25 08:50:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-25 08:50:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-25 08:50:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-25 08:50:38] 
[2025-12-25 08:50:38] 2025-12-25 13:50:07,274 | INFO     | ***************************************
[2025-12-25 08:50:38] 2025-12-25 13:50:07,777 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-25 08:50:38] 2025-12-25 13:50:07,794 | INFO     | sufficient remaining disk space (103501791232 B)
[2025-12-25 08:50:38] 2025-12-25 13:50:07,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-25 08:50:38] 2025-12-25 13:50:07,795 | INFO     | current server update state: UPDATING_FINAL
[2025-12-25 08:50:38] 2025-12-25 13:50:07,795 | INFO     | update_server=False
[2025-12-25 08:50:38] 2025-12-25 13:50:07,795 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-25 08:50:38] 2025-12-25 13:50:07,882 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-25 08:50:38] 2025-12-25 13:50:07,882 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-25 08:50:38] 2025-12-25 13:50:07,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-25 08:50:38] 2025-12-25 13:50:07,883 | INFO     | will abort loop
[2025-12-25 08:50:38] 2025-12-25 13:50:07,967 | INFO     | all payload control threads have been joined
[2025-12-25 08:50:38] 2025-12-25 13:50:08,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-25 08:50:38] 2025-12-25 13:50:08,297 | INFO     | all job control threads have been joined
[2025-12-25 08:50:38] 2025-12-25 13:50:08,397 | INFO     | all data control threads have been joined
[2025-12-25 08:50:38] 2025-12-25 13:50:08,801 | INFO     | [job] retrieve thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:08,888 | INFO     | [job] job monitor thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:08,973 | INFO     | [payload] control thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,161 | INFO     | [payload] validate_post thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,161 | INFO     | [payload] failed_post thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,303 | INFO     | [job] control thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,320 | INFO     | [payload] execute_payloads thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,320 | INFO     | [job] create_data_payload thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,402 | INFO     | [data] control thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,472 | INFO     | [job] validate thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,474 | INFO     | [payload] validate_pre thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,515 | INFO     | [data] copytool_in thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:09,677 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:10,097 | INFO     | [data] copytool_out thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:10,665 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-25 08:50:38] 2025-12-25 13:50:10,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-25 08:50:38] 2025-12-25 13:50:11,773 | INFO     | [job] queue monitor thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:12,078 | INFO     | [monitor] cgroup control has ended
[2025-12-25 08:50:38] 2025-12-25 13:50:14,671 | INFO     | [data] queue_monitor thread has finished
[2025-12-25 08:50:38] 2025-12-25 13:50:16,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140404364490560)>', '<ExcThread(monitor, started 140403906942720)>']
[2025-12-25 08:50:38] 2025-12-25 13:50:21,423 | INFO     | all workflow threads have been joined
[2025-12-25 08:50:38] 2025-12-25 13:50:21,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-25 08:50:38] 2025-12-25 13:50:21,424 | INFO     | traces error code: 0
[2025-12-25 08:50:38] 2025-12-25 13:50:21,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-25 08:50:38] 2025-12-25 13:50:38,172 | INFO     | PID=35353 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-25 08:50:38] 2025-12-25 13:50:38,172 | INFO     | .. there are 2 such processes running
[2025-12-25 08:50:38] 2025-12-25 13:50:38,172 | INFO     | found 0 job(s) in 20 queues
[2025-12-25 08:50:38] 2025-12-25 13:50:38,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-25 08:50:38] 2025-12-25 13:50:38,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-25 08:50:38] 2025-12-25 13:50:38,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-25 08:50:38] 2025-12-25 13:50:38,172 | INFO     | [monitor] control thread has ended
[2025-12-25 08:50:38] 2025-12-25 13:50:38,259 [wrapper] ==== pilot stdout END ====
[2025-12-25 08:50:38] 2025-12-25 13:50:38,263 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-25 08:50:38] 2025-12-25 13:50:38,266 [wrapper] pilotpid: 35353
[2025-12-25 08:50:38] 2025-12-25 13:50:38,269 [wrapper] Pilot exit status: 0
[2025-12-25 08:50:38] 2025-12-25 13:50:38,280 [wrapper] pandaids: 6937252066
[2025-12-25 08:50:38] 2025-12-25 13:50:38,314 [wrapper] cleanup supervisor_pilot  4046 35354
[2025-12-25 08:50:38] 2025-12-25 13:50:38,317 [wrapper] Test setup, not cleaning
[2025-12-25 08:50:38] 2025-12-25 13:50:38,321 [wrapper] apfmon messages muted
[2025-12-25 08:50:38] 2025-12-25 13:50:38,325 [wrapper] ==== wrapper stdout END ====
[2025-12-25 08:50:38] 2025-12-25 13:50:38,329 [wrapper] ==== wrapper stderr END ====
[2025-12-25 08:50:38]  *** Error codes and diagnostics ***
[2025-12-25 08:50:38]     "exeErrorCode": 0,
[2025-12-25 08:50:38]     "exeErrorDiag": "",
[2025-12-25 08:50:38]     "pilotErrorCode": 0,
[2025-12-25 08:50:38]     "pilotErrorDiag": "",
[2025-12-25 08:50:38]  *** Listing of results directory ***
[2025-12-25 08:50:38] total 1412484
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas     579449 Dec 19 19:14 pilot3.tar.gz
[2025-12-25 08:50:38] -rwx------ 1 boincer umatlas      36322 Dec 19 19:16 runpilot2-wrapper.sh
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas       5112 Dec 19 19:20 queuedata.json
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas        100 Dec 24 15:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-25 08:50:38] -rwxr-xr-x 1 boincer umatlas       7986 Dec 24 15:02 run_atlas
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas        105 Dec 24 15:02 job.xml
[2025-12-25 08:50:38] -rw-r--r-- 2 boincer umatlas  416504445 Dec 24 15:02 EVNT.47960986._000032.pool.root.1
[2025-12-25 08:50:38] -rw-r--r-- 2 boincer umatlas      15847 Dec 24 15:02 start_atlas.sh
[2025-12-25 08:50:38] drwxrwx--x 2 boincer umatlas       4096 Dec 24 15:02 shared
[2025-12-25 08:50:38] -rw-r--r-- 2 boincer umatlas     592608 Dec 24 15:02 input.tar.gz
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas          0 Dec 24 15:02 boinc_lockfile
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas       2876 Dec 24 15:02 pandaJob.out
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas         57 Dec 24 15:02 setup.sh.local
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas     989242 Dec 24 15:02 agis_schedconf.cvmfs.json
[2025-12-25 08:50:38] drwx------ 5 boincer umatlas       4096 Dec 24 15:02 pilot3
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas        533 Dec 25 08:39 boinc_task_state.xml
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas       6038 Dec 25 08:49 init_data.xml
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas 1003441500 Dec 25 08:49 HITS.47960988._000616.pool.root.1
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas         95 Dec 25 08:49 pilot_heartbeat.json
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas       1059 Dec 25 08:49 memory_monitor_summary.json
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas    1516240 Dec 25 08:49 agis_ddmendpoints.agis.ALL.json
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas    2238453 Dec 25 08:49 log.47960988._000616.job.log.tgz.1
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas       8639 Dec 25 08:50 heartbeat.json
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas       8192 Dec 25 08:50 boinc_mmap_file
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas         29 Dec 25 08:50 wrapper_checkpoint.txt
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas        820 Dec 25 08:50 pilotlog.txt
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas    9022611 Dec 25 08:50 log.47960988._000616.job.log.1
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas        353 Dec 25 08:50 output.list
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas        620 Dec 25 08:50 runtime_log
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas   11284480 Dec 25 08:50 result.tar.gz
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas       9333 Dec 25 08:50 runtime_log.err
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas        665 Dec 25 08:50 AOWNDmNpzq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2QcKDmyfZhTm.diag
[2025-12-25 08:50:38] -rw-r--r-- 1 boincer umatlas      21254 Dec 25 08:50 stderr.txt
[2025-12-25 08:50:38] HITS file was successfully produced:
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas 1003441500 Dec 25 08:49 shared/HITS.pool.root.1
[2025-12-25 08:50:38]  *** Contents of shared directory: ***
[2025-12-25 08:50:38] total 1398288
[2025-12-25 08:50:38] -rw-r--r-- 2 boincer umatlas  416504445 Dec 24 15:02 ATLAS.root_0
[2025-12-25 08:50:38] -rw-r--r-- 2 boincer umatlas      15847 Dec 24 15:02 start_atlas.sh
[2025-12-25 08:50:38] -rw-r--r-- 2 boincer umatlas     592608 Dec 24 15:02 input.tar.gz
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas 1003441500 Dec 25 08:49 HITS.pool.root.1
[2025-12-25 08:50:38] -rw------- 1 boincer umatlas   11284480 Dec 25 08:50 result.tar.gz
08:50:39 (27089): run_atlas exited; CPU time 506111.906224
08:50:39 (27089): called boinc_finish(0)

</stderr_txt>
]]>

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