Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:23:35 (399271): wrapper (7.7.26015): starting
13:23:35 (399271): wrapper: running run_atlas (--nthreads 12)
[2025-12-24 13:23:35] Arguments: --nthreads 12
[2025-12-24 13:23:35] Threads: 12
[2025-12-24 13:23:35] Checking for CVMFS
[2025-12-24 13:23:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-24 13:23:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-24 13:23:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-24 13:23:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-24 13:23:37] 2.13.3.0 6723 224 67924 154378 0 90 21235509 40960001 8256 16776704 0 269944 99.177 166995 34531 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-24 13:23:37] CVMFS is ok
[2025-12-24 13:23:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-24 13:23:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-24 13:23:37] Further information can be found at the LHC@home message board.
[2025-12-24 13:23:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-24 13:23:37] Checking for apptainer binary...
[2025-12-24 13:23:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-24 13:23:37] Running /usr/bin/apptainer --version
[2025-12-24 13:23:37] apptainer version 1.4.5-2.el9
[2025-12-24 13:23:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-24 13:23:37] c-210-35-2.aglt2.org
[2025-12-24 13:23:37] apptainer works
[2025-12-24 13:23:37] Set ATHENA_PROC_NUMBER=12
[2025-12-24 13:23:37] Set ATHENA_CORE_NUMBER=12
[2025-12-24 13:23:37] Starting ATLAS job with PandaID=6939503901
[2025-12-24 13:23:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-24 16:59:49]  *** The last 200 lines of the pilot log: ***
[2025-12-24 16:59:49] 2025-12-24 21:58:43,790 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-24 16:59:49] 2025-12-24 21:58:43,798 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3075.7728392857143
[2025-12-24 16:59:49] 2025-12-24 21:58:43,809 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6939503901/memory_monitor_summary.json (trf name=prmon)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,810 | INFO     | extracted standard info from prmon json
[2025-12-24 16:59:49] 2025-12-24 21:58:43,810 | INFO     | extracted standard memory fields from prmon json
[2025-12-24 16:59:49] 2025-12-24 21:58:43,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-24 16:59:49] 2025-12-24 21:58:43,810 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-24 16:59:49] 2025-12-24 21:58:43,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-24 16:59:49] 2025-12-24 21:58:43,814 | INFO     | fitting pss+swap vs Time
[2025-12-24 16:59:49] 2025-12-24 21:58:43,815 | INFO     | sum of square deviations: 2871541532.9571433
[2025-12-24 16:59:49] 2025-12-24 21:58:43,816 | INFO     | sum of deviations: -3170256095.6714325
[2025-12-24 16:59:49] 2025-12-24 21:58:43,816 | INFO     | mean x: 1766607113.0142858
[2025-12-24 16:59:49] 2025-12-24 21:58:43,816 | INFO     | mean y: 2761905.557142857
[2025-12-24 16:59:49] 2025-12-24 21:58:43,816 | INFO     | intersect: 1953141833.6936855
[2025-12-24 16:59:49] 2025-12-24 21:58:43,816 | INFO     | chi2: 3.695503426871783
[2025-12-24 16:59:49] 2025-12-24 21:58:43,817 | INFO     | sum of square deviations: 2671300949.1024384
[2025-12-24 16:59:49] 2025-12-24 21:58:43,818 | INFO     | sum of deviations: 12975023367.034136
[2025-12-24 16:59:49] 2025-12-24 21:58:43,818 | INFO     | mean x: 1766606960.5268292
[2025-12-24 16:59:49] 2025-12-24 21:58:43,818 | INFO     | mean y: 2773967.1756097563
[2025-12-24 16:59:49] 2025-12-24 21:58:43,818 | INFO     | intersect: -8577976397.51187
[2025-12-24 16:59:49] 2025-12-24 21:58:43,818 | INFO     | chi2: 2.8928243087337204
[2025-12-24 16:59:49] 2025-12-24 21:58:43,819 | INFO     | current chi2=2.8928243087337204 (change=21.72042683823255 %)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,819 | INFO     | right removable region: 204
[2025-12-24 16:59:49] 2025-12-24 21:58:43,819 | INFO     | sum of square deviations: 2671235069.1024384
[2025-12-24 16:59:49] 2025-12-24 21:58:43,820 | INFO     | sum of deviations: -58809888765.56096
[2025-12-24 16:59:49] 2025-12-24 21:58:43,820 | INFO     | mean x: 1766607265.5268292
[2025-12-24 16:59:49] 2025-12-24 21:58:43,820 | INFO     | mean y: 2804044.8292682925
[2025-12-24 16:59:49] 2025-12-24 21:58:43,820 | INFO     | intersect: 38896414711.96313
[2025-12-24 16:59:49] 2025-12-24 21:58:43,821 | INFO     | chi2: 1.2141406836644917
[2025-12-24 16:59:49] 2025-12-24 21:58:43,821 | INFO     | current chi2=1.2141406836644917 (change=67.14545913187658 %)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,821 | INFO     | sum of square deviations: 2480463667.6800036
[2025-12-24 16:59:49] 2025-12-24 21:58:43,822 | INFO     | sum of deviations: -64399372484.56002
[2025-12-24 16:59:49] 2025-12-24 21:58:43,822 | INFO     | mean x: 1766607418.04
[2025-12-24 16:59:49] 2025-12-24 21:58:43,822 | INFO     | mean y: 2808445.945
[2025-12-24 16:59:49] 2025-12-24 21:58:43,822 | INFO     | intersect: 45868591779.410736
[2025-12-24 16:59:49] 2025-12-24 21:58:43,823 | INFO     | chi2: 1.1316663651764798
[2025-12-24 16:59:49] 2025-12-24 21:58:43,823 | INFO     | current chi2=1.1316663651764798 (change=6.792814012218897 %)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,823 | INFO     | left removable region: 20
[2025-12-24 16:59:49] 2025-12-24 21:58:43,823 | INFO     | sum of square deviations: 1931535521.6521704
[2025-12-24 16:59:49] 2025-12-24 21:58:43,824 | INFO     | sum of deviations: -30371014386.739117
[2025-12-24 16:59:49] 2025-12-24 21:58:43,824 | INFO     | mean x: 1766607540.0434783
[2025-12-24 16:59:49] 2025-12-24 21:58:43,824 | INFO     | mean y: 2806963.467391304
[2025-12-24 16:59:49] 2025-12-24 21:58:43,824 | INFO     | intersect: 27780532204.82808
[2025-12-24 16:59:49] 2025-12-24 21:58:43,824 | INFO     | chi2: 0.24183958573403122
[2025-12-24 16:59:49] 2025-12-24 21:58:43,825 | INFO     | current memory leak: -15.72 B/s (using 184 data points, chi2=0.24)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,825 | INFO     | could have reported an average CPU frequency of 3144 MHz (10 samples)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,825 | INFO     | ..............................
[2025-12-24 16:59:49] 2025-12-24 21:58:43,825 | INFO     | . Timing measurements:
[2025-12-24 16:59:49] 2025-12-24 21:58:43,825 | INFO     | . get job = 0 s
[2025-12-24 16:59:49] 2025-12-24 21:58:43,826 | INFO     | . initial setup = 4 s
[2025-12-24 16:59:49] 2025-12-24 21:58:43,826 | INFO     | . payload setup = 27 s
[2025-12-24 16:59:49] 2025-12-24 21:58:43,826 | INFO     | . stage-in = 0 s
[2025-12-24 16:59:49] 2025-12-24 21:58:43,826 | INFO     | . payload execution = 12789 s
[2025-12-24 16:59:49] 2025-12-24 21:58:43,826 | INFO     | . stage-out = 2 s
[2025-12-24 16:59:49] 2025-12-24 21:58:43,826 | INFO     | . log creation = 0 s
[2025-12-24 16:59:49] 2025-12-24 21:58:43,826 | INFO     | ..............................
[2025-12-24 16:59:49] 2025-12-24 21:58:43,834 | INFO     | sufficient remaining disk space (75432460288 B)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,834 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,896 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6939503901: 4548199 B (within 2768240640 B limit)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,897 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6939503901/HITS.47929280._004963.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,903 | INFO     | total size of present files: 0 B (workdir size: 4548199 B)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,913 | INFO     | 
[2025-12-24 16:59:49] 2025-12-24 21:58:43,913 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6939503901/HITS.47929280._004963.pool.root.1 since it does not exist
[2025-12-24 16:59:49] 2025-12-24 21:58:43,913 | INFO     | job summary report
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | --------------------------------------------------
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | PanDA job id: 6939503901
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | task id: 47929280
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | errors: (none)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | pilot state: finished 
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | transexitcode: 0
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | exeerrorcode: 0
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | exeerrordiag: 
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | exitcode: 0
[2025-12-24 16:59:49] 2025-12-24 21:58:43,914 | INFO     | exitmsg: OK
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | cpuconsumptiontime: 39107 s
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | nevents: 400
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | neventsw: 0
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | pid: 410316
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | pgrp: 410316
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | corecount: 12
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | event service: False
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | sizes: {0: 2283104, 1: 2283789, 2: 2283988, 12: 2283988, 14: 2284278, 23: 2284306, 12821: 2314417, 12824: 2323471, 12828: 2323609}
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | --------------------------------------------------
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | 
[2025-12-24 16:59:49] 2025-12-24 21:58:43,915 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-24 16:59:49] 2025-12-24 21:58:43,937 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-24 16:59:49] 2025-12-24 21:58:43,940 | INFO     | job 6939503901 has completed (purged errors)
[2025-12-24 16:59:49] 2025-12-24 21:58:43,940 | INFO     | overall cleanup function is called
[2025-12-24 16:59:49] 2025-12-24 21:58:44,177 | INFO     | number of running child processes to parent process 410316: 1
[2025-12-24 16:59:49] 2025-12-24 21:58:44,177 | INFO     | maximum number of monitored processes: 6
[2025-12-24 16:59:49] 2025-12-24 21:58:44,177 | INFO     | aborting job monitoring since job object (job id=6939503901) has expired
[2025-12-24 16:59:49] 2025-12-24 21:58:44,949 | INFO     | --- collectZombieJob: --- 10, [410316]
[2025-12-24 16:59:49] 2025-12-24 21:58:44,949 | INFO     | zombie collector waiting for pid 410316
[2025-12-24 16:59:49] 2025-12-24 21:58:44,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-24 16:59:49] 2025-12-24 21:58:44,949 | INFO     | collected zombie processes
[2025-12-24 16:59:49] 2025-12-24 21:58:44,949 | INFO     | will attempt to kill all subprocesses of pid=410316
[2025-12-24 16:59:49] 2025-12-24 21:58:45,160 | INFO     | process IDs to be killed: [410316] (in reverse order)
[2025-12-24 16:59:49] 2025-12-24 21:58:45,237 | WARNING  | found no corresponding commands to process id(s)
[2025-12-24 16:59:49] 2025-12-24 21:58:45,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-24 16:59:49] 2025-12-24 21:58:45,246 | INFO     | did not find any defunct processes belonging to 410316
[2025-12-24 16:59:49] 2025-12-24 21:58:45,253 | INFO     | did not find any defunct processes belonging to 410316
[2025-12-24 16:59:49] 2025-12-24 21:58:45,254 | INFO     | ready for new job
[2025-12-24 16:59:49] 2025-12-24 21:58:45,254 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-24 16:59:49] 2025-12-24 21:58:45,256 | INFO     | ***************************************
[2025-12-24 16:59:49] 2025-12-24 21:58:45,256 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-24 16:59:49] 2025-12-24 21:58:45,256 | INFO     | ***************************************
[2025-12-24 16:59:49] 2025-12-24 21:58:45,256 | INFO     | 
[2025-12-24 16:59:49] 2025-12-24 21:58:45,259 | INFO     | architecture information:
[2025-12-24 16:59:49] 2025-12-24 21:58:45,260 | INFO     | executing command: cat /etc/os-release
[2025-12-24 16:59:49] 2025-12-24 21:58:45,274 | INFO     | cat /etc/os-release:
[2025-12-24 16:59:49] NAME="CentOS Linux"
[2025-12-24 16:59:49] VERSION="7 (Core)"
[2025-12-24 16:59:49] ID="centos"
[2025-12-24 16:59:49] ID_LIKE="rhel fedora"
[2025-12-24 16:59:49] VERSION_ID="7"
[2025-12-24 16:59:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-24 16:59:49] ANSI_COLOR="0;31"
[2025-12-24 16:59:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-24 16:59:49] HOME_URL="https://www.centos.org/"
[2025-12-24 16:59:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-24 16:59:49] 
[2025-12-24 16:59:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-24 16:59:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-24 16:59:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-24 16:59:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-24 16:59:49] 
[2025-12-24 16:59:49] 2025-12-24 21:58:45,275 | INFO     | ***************************************
[2025-12-24 16:59:49] 2025-12-24 21:58:45,777 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-24 16:59:49] 2025-12-24 21:58:45,792 | INFO     | sufficient remaining disk space (75438751744 B)
[2025-12-24 16:59:49] 2025-12-24 21:58:45,792 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-24 16:59:49] 2025-12-24 21:58:45,792 | INFO     | current server update state: UPDATING_FINAL
[2025-12-24 16:59:49] 2025-12-24 21:58:45,792 | INFO     | update_server=False
[2025-12-24 16:59:49] 2025-12-24 21:58:45,792 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-24 16:59:49] 2025-12-24 21:58:45,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-24 16:59:49] 2025-12-24 21:58:45,793 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-24 16:59:49] 2025-12-24 21:58:45,793 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-24 16:59:49] 2025-12-24 21:58:45,794 | INFO     | aborting loop
[2025-12-24 16:59:49] 2025-12-24 21:58:46,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-24 16:59:49] 2025-12-24 21:58:46,177 | INFO     | all data control threads have been joined
[2025-12-24 16:59:49] 2025-12-24 21:58:46,792 | INFO     | all payload control threads have been joined
[2025-12-24 16:59:49] 2025-12-24 21:58:46,799 | INFO     | [job] job monitor thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:46,800 | INFO     | [job] retrieve thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:46,800 | INFO     | [job] queue monitor thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:46,874 | INFO     | all job control threads have been joined
[2025-12-24 16:59:49] 2025-12-24 21:58:46,979 | INFO     | [data] copytool_in thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,004 | INFO     | [payload] validate_pre thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,026 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,182 | INFO     | [data] control thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,344 | INFO     | [payload] validate_post thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,401 | INFO     | [payload] failed_post thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,599 | INFO     | [payload] execute_payloads thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,706 | INFO     | [job] validate thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,797 | INFO     | [payload] control thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,800 | INFO     | [data] copytool_out thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,879 | INFO     | [job] control thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:47,946 | INFO     | [job] create_data_payload thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:58:50,007 | INFO     | [data] queue_monitor thread has finished
[2025-12-24 16:59:49] 2025-12-24 21:59:16,701 | INFO     | PID=403027 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-24 16:59:49] 2025-12-24 21:59:16,701 | INFO     | .. there are 8 such processes running
[2025-12-24 16:59:49] 2025-12-24 21:59:16,702 | INFO     | found 0 job(s) in 20 queues
[2025-12-24 16:59:49] 2025-12-24 21:59:16,702 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-24 16:59:49] 2025-12-24 21:59:16,702 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-24 16:59:49] 2025-12-24 21:59:42,857 | INFO     | [monitor] cgroup control has ended
[2025-12-24 16:59:49] 2025-12-24 21:59:44,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140316266579776)>', '<ExcThread(monitor, started 140315910469376)>']
[2025-12-24 16:59:49] 2025-12-24 21:59:44,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-24 16:59:49] 2025-12-24 21:59:44,827 | INFO     | [monitor] control thread has ended
[2025-12-24 16:59:49] 2025-12-24 21:59:49,477 | INFO     | all workflow threads have been joined
[2025-12-24 16:59:49] 2025-12-24 21:59:49,477 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-24 16:59:49] 2025-12-24 21:59:49,477 | INFO     | traces error code: 0
[2025-12-24 16:59:49] 2025-12-24 21:59:49,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-24 16:59:49] 2025-12-24 21:59:49,655 [wrapper] ==== pilot stdout END ====
[2025-12-24 16:59:49] 2025-12-24 21:59:49,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-24 16:59:49] 2025-12-24 21:59:49,662 [wrapper] pilotpid: 403027
[2025-12-24 16:59:49] 2025-12-24 21:59:49,665 [wrapper] Pilot exit status: 0
[2025-12-24 16:59:49] 2025-12-24 21:59:49,678 [wrapper] pandaids: 6939503901
[2025-12-24 16:59:49] 2025-12-24 21:59:49,735 [wrapper] cleanup supervisor_pilot  696619 403028
[2025-12-24 16:59:49] 2025-12-24 21:59:49,738 [wrapper] Test setup, not cleaning
[2025-12-24 16:59:49] 2025-12-24 21:59:49,741 [wrapper] apfmon messages muted
[2025-12-24 16:59:49] 2025-12-24 21:59:49,743 [wrapper] ==== wrapper stdout END ====
[2025-12-24 16:59:49] 2025-12-24 21:59:49,746 [wrapper] ==== wrapper stderr END ====
[2025-12-24 16:59:49]  *** Error codes and diagnostics ***
[2025-12-24 16:59:49]     "exeErrorCode": 0,
[2025-12-24 16:59:49]     "exeErrorDiag": "",
[2025-12-24 16:59:49]     "pilotErrorCode": 0,
[2025-12-24 16:59:49]     "pilotErrorDiag": "",
[2025-12-24 16:59:49]  *** Listing of results directory ***
[2025-12-24 16:59:49] total 446052
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas    579449 Dec 20 18:49 pilot3.tar.gz
[2025-12-24 16:59:49] -rwx------. 1 boincer umatlas     36322 Dec 20 19:07 runpilot2-wrapper.sh
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas      5112 Dec 20 19:07 queuedata.json
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas       100 Dec 24 13:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-24 16:59:49] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 24 13:23 run_atlas
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas       105 Dec 24 13:23 job.xml
[2025-12-24 16:59:49] -rw-r--r--. 2 boincer umatlas 252931868 Dec 24 13:23 EVNT.47929278._000191.pool.root.1
[2025-12-24 16:59:49] -rw-r--r--. 2 boincer umatlas     15847 Dec 24 13:23 start_atlas.sh
[2025-12-24 16:59:49] drwxrwx--x. 2 boincer umatlas      4096 Dec 24 13:23 shared
[2025-12-24 16:59:49] -rw-r--r--. 2 boincer umatlas    592412 Dec 24 13:23 input.tar.gz
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas         0 Dec 24 13:23 boinc_lockfile
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas      2564 Dec 24 13:23 pandaJob.out
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas        57 Dec 24 13:23 setup.sh.local
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas    989250 Dec 24 13:24 agis_schedconf.cvmfs.json
[2025-12-24 16:59:49] drwx------. 5 boincer umatlas      4096 Dec 24 13:24 pilot3
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas      6838 Dec 24 16:56 init_data.xml
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas 195611381 Dec 24 16:58 HITS.47929280._004963.pool.root.1
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas       531 Dec 24 16:58 boinc_task_state.xml
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas        95 Dec 24 16:58 pilot_heartbeat.json
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas      1040 Dec 24 16:58 memory_monitor_summary.json
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas   1516240 Dec 24 16:58 agis_ddmendpoints.agis.ALL.json
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas    494027 Dec 24 16:58 log.47929280._004963.job.log.tgz.1
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas      7824 Dec 24 16:58 heartbeat.json
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas      8192 Dec 24 16:59 boinc_mmap_file
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas        28 Dec 24 16:59 wrapper_checkpoint.txt
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas      4822 Dec 24 16:59 pilotlog.txt
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas   1658230 Dec 24 16:59 log.47929280._004963.job.log.1
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas       357 Dec 24 16:59 output.list
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas       620 Dec 24 16:59 runtime_log
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas   2170880 Dec 24 16:59 result.tar.gz
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas      9355 Dec 24 16:59 runtime_log.err
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas       658 Dec 24 16:59 L2BMDmf9Lr8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoghKDmmwzXun.diag
[2025-12-24 16:59:49] -rw-r--r--. 1 boincer umatlas     21578 Dec 24 16:59 stderr.txt
[2025-12-24 16:59:49] HITS file was successfully produced:
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas 195611381 Dec 24 16:58 shared/HITS.pool.root.1
[2025-12-24 16:59:49]  *** Contents of shared directory: ***
[2025-12-24 16:59:49] total 440752
[2025-12-24 16:59:49] -rw-r--r--. 2 boincer umatlas 252931868 Dec 24 13:23 ATLAS.root_0
[2025-12-24 16:59:49] -rw-r--r--. 2 boincer umatlas     15847 Dec 24 13:23 start_atlas.sh
[2025-12-24 16:59:49] -rw-r--r--. 2 boincer umatlas    592412 Dec 24 13:23 input.tar.gz
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas 195611381 Dec 24 16:58 HITS.pool.root.1
[2025-12-24 16:59:49] -rw-------. 1 boincer umatlas   2170880 Dec 24 16:59 result.tar.gz
16:59:51 (399271): run_atlas exited; CPU time 39317.793584
16:59:51 (399271): called boinc_finish(0)

</stderr_txt>
]]>

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