Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:03:22 (1846187): wrapper (7.7.26015): starting
22:03:22 (1846187): wrapper: running run_atlas (--nthreads 9)
[2025-12-23 22:03:22] Arguments: --nthreads 9
[2025-12-23 22:03:22] Threads: 9
[2025-12-23 22:03:22] Checking for CVMFS
[2025-12-23 22:03:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-23 22:03:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-23 22:03:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-23 22:03:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-23 22:03:22] 2.13.3.0 6699 75592 225388 154353 3 91 24510856 40960001 976 16776704 0 5256 99.836 17384 47758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-23 22:03:22] CVMFS is ok
[2025-12-23 22:03:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-23 22:03:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-23 22:03:22] Further information can be found at the LHC@home message board.
[2025-12-23 22:03:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-23 22:03:22] Checking for apptainer binary...
[2025-12-23 22:03:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-23 22:03:22] Running /usr/bin/apptainer --version
[2025-12-23 22:03:22] apptainer version 1.4.5-2.el9
[2025-12-23 22:03:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-23 22:03:22] c-212-4.aglt2.org
[2025-12-23 22:03:22] apptainer works
[2025-12-23 22:03:22] Set ATHENA_PROC_NUMBER=9
[2025-12-23 22:03:22] Set ATHENA_CORE_NUMBER=9
[2025-12-23 22:03:22] Starting ATLAS job with PandaID=6938199051
[2025-12-23 22:03:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-24 03:03:13]  *** The last 200 lines of the pilot log: ***
[2025-12-24 03:03:13] 2025-12-24 08:02:38,606 | INFO     | PID=1850156 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-24 03:03:13] 2025-12-24 08:02:38,606 | INFO     | .. there are 5 such processes running
[2025-12-24 03:03:13] 2025-12-24 08:02:39,607 | INFO     | time since job start (17949s) is within the limit (174528.0s)
[2025-12-24 03:03:13] 2025-12-24 08:02:39,820 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-24 03:03:13] 2025-12-24 08:02:39,823 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3034.467364583334
[2025-12-24 03:03:13] 2025-12-24 08:02:39,832 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6938199051/memory_monitor_summary.json (trf name=prmon)
[2025-12-24 03:03:13] 2025-12-24 08:02:39,832 | INFO     | extracted standard info from prmon json
[2025-12-24 03:03:13] 2025-12-24 08:02:39,832 | INFO     | extracted standard memory fields from prmon json
[2025-12-24 03:03:13] 2025-12-24 08:02:39,832 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-24 03:03:13] 2025-12-24 08:02:39,836 | INFO     | fitting pss+swap vs Time
[2025-12-24 03:03:13] 2025-12-24 08:02:39,836 | INFO     | sum of square deviations: 7880007190.9966135
[2025-12-24 03:03:13] 2025-12-24 08:02:39,837 | INFO     | sum of deviations: 158331399682.68018
[2025-12-24 03:03:13] 2025-12-24 08:02:39,837 | INFO     | mean x: 1766554370.329932
[2025-12-24 03:03:13] 2025-12-24 08:02:39,837 | INFO     | mean y: 3122323.0136054424
[2025-12-24 03:03:13] 2025-12-24 08:02:39,837 | INFO     | intersect: -35491899355.32563
[2025-12-24 03:03:13] 2025-12-24 08:02:39,838 | INFO     | chi2: 2.92306467420209
[2025-12-24 03:03:13] 2025-12-24 08:02:39,838 | INFO     | sum of square deviations: 7484846289.993049
[2025-12-24 03:03:13] 2025-12-24 08:02:39,839 | INFO     | sum of deviations: 220153354732.87863
[2025-12-24 03:03:13] 2025-12-24 08:02:39,839 | INFO     | mean x: 1766554217.8442907
[2025-12-24 03:03:13] 2025-12-24 08:02:39,839 | INFO     | mean y: 3146039.7750865053
[2025-12-24 03:03:13] 2025-12-24 08:02:39,839 | INFO     | intersect: -51956883907.1189
[2025-12-24 03:03:13] 2025-12-24 08:02:39,839 | INFO     | chi2: 1.4009578468027892
[2025-12-24 03:03:13] 2025-12-24 08:02:39,839 | INFO     | current chi2=1.4009578468027892 (change=52.0722938781637 %)
[2025-12-24 03:03:13] 2025-12-24 08:02:39,839 | INFO     | sum of square deviations: 7103127501.366165
[2025-12-24 03:03:13] 2025-12-24 08:02:39,840 | INFO     | sum of deviations: 212639208637.2886
[2025-12-24 03:03:13] 2025-12-24 08:02:39,840 | INFO     | mean x: 1766554065.359155
[2025-12-24 03:03:13] 2025-12-24 08:02:39,840 | INFO     | mean y: 3143038.36971831
[2025-12-24 03:03:13] 2025-12-24 08:02:39,840 | INFO     | intersect: -52880415422.4221
[2025-12-24 03:03:13] 2025-12-24 08:02:39,840 | INFO     | chi2: 1.3993605908257758
[2025-12-24 03:03:13] 2025-12-24 08:02:39,840 | INFO     | current chi2=1.3993605908257758 (change=0.11401170853631527 %)
[2025-12-24 03:03:13] 2025-12-24 08:02:39,840 | INFO     | right removable region: 283
[2025-12-24 03:03:13] 2025-12-24 08:02:39,841 | INFO     | sum of square deviations: 7484697449.993049
[2025-12-24 03:03:13] 2025-12-24 08:02:39,841 | INFO     | sum of deviations: 100502594471.43607
[2025-12-24 03:03:13] 2025-12-24 08:02:39,841 | INFO     | mean x: 1766554522.8442907
[2025-12-24 03:03:13] 2025-12-24 08:02:39,841 | INFO     | mean y: 3144482.809688581
[2025-12-24 03:03:13] 2025-12-24 08:02:39,842 | INFO     | intersect: -23717695805.96723
[2025-12-24 03:03:13] 2025-12-24 08:02:39,842 | INFO     | chi2: 1.5949157815147925
[2025-12-24 03:03:13] 2025-12-24 08:02:39,842 | INFO     | current chi2=1.5949157815147925 (change=45.43686304340299 %)
[2025-12-24 03:03:13] 2025-12-24 08:02:39,842 | INFO     | sum of square deviations: 7102829821.366166
[2025-12-24 03:03:13] 2025-12-24 08:02:39,843 | INFO     | sum of deviations: 85617584518.02118
[2025-12-24 03:03:13] 2025-12-24 08:02:39,843 | INFO     | mean x: 1766554675.359155
[2025-12-24 03:03:13] 2025-12-24 08:02:39,843 | INFO     | mean y: 3150422.0880281692
[2025-12-24 03:03:13] 2025-12-24 08:02:39,843 | INFO     | intersect: -21290918002.344063
[2025-12-24 03:03:13] 2025-12-24 08:02:39,843 | INFO     | chi2: 1.5735127423953696
[2025-12-24 03:03:13] 2025-12-24 08:02:39,843 | INFO     | current chi2=1.5735127423953696 (change=1.3419541876433783 %)
[2025-12-24 03:03:13] 2025-12-24 08:02:39,843 | INFO     | left removable region: 20
[2025-12-24 03:03:13] 2025-12-24 08:02:39,843 | INFO     | sum of square deviations: 5640852625.6273575
[2025-12-24 03:03:13] 2025-12-24 08:02:39,844 | INFO     | sum of deviations: 114881936952.51718
[2025-12-24 03:03:13] 2025-12-24 08:02:39,844 | INFO     | mean x: 1766554644.9277565
[2025-12-24 03:03:13] 2025-12-24 08:02:39,844 | INFO     | mean y: 3183552.0798479086
[2025-12-24 03:03:13] 2025-12-24 08:02:39,844 | INFO     | intersect: -35974572438.16746
[2025-12-24 03:03:13] 2025-12-24 08:02:39,844 | INFO     | chi2: 0.022362538523207413
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | current memory leak: 20.37 B/s (using 263 data points, chi2=0.02)
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | could have reported an average CPU frequency of 3136 MHz (13 samples)
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | ..............................
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | . Timing measurements:
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | . get job = 0 s
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | . initial setup = 2 s
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | . payload setup = 4 s
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | . stage-in = 0 s
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | . payload execution = 17918 s
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | . stage-out = 2 s
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | . log creation = 0 s
[2025-12-24 03:03:13] 2025-12-24 08:02:39,845 | INFO     | ..............................
[2025-12-24 03:03:13] 2025-12-24 08:02:40,159 | INFO     | 
[2025-12-24 03:03:13] 2025-12-24 08:02:40,159 | INFO     | job summary report
[2025-12-24 03:03:13] 2025-12-24 08:02:40,159 | INFO     | --------------------------------------------------
[2025-12-24 03:03:13] 2025-12-24 08:02:40,159 | INFO     | PanDA job id: 6938199051
[2025-12-24 03:03:13] 2025-12-24 08:02:40,159 | INFO     | task id: 47961959
[2025-12-24 03:03:13] 2025-12-24 08:02:40,159 | INFO     | errors: (none)
[2025-12-24 03:03:13] 2025-12-24 08:02:40,159 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-24 03:03:13] 2025-12-24 08:02:40,159 | INFO     | pilot state: finished 
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | transexitcode: 0
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | exeerrorcode: 0
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | exeerrordiag: 
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | exitcode: 0
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | exitmsg: OK
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | cpuconsumptiontime: 148143 s
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | nevents: 1000
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | neventsw: 0
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | pid: 1856779
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | pgrp: 1856779
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | corecount: 9
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | event service: False
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | sizes: {0: 2284602, 3: 2284864, 11: 2284892, 17926: 2318087, 17929: 2327081, 17932: 2327137, 17935: 2327511}
[2025-12-24 03:03:13] 2025-12-24 08:02:40,160 | INFO     | --------------------------------------------------
[2025-12-24 03:03:13] 2025-12-24 08:02:40,161 | INFO     | 
[2025-12-24 03:03:13] 2025-12-24 08:02:40,161 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-24 03:03:13] 2025-12-24 08:02:40,180 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-24 03:03:13] 2025-12-24 08:02:40,182 | INFO     | job 6938199051 has completed (purged errors)
[2025-12-24 03:03:13] 2025-12-24 08:02:40,182 | INFO     | overall cleanup function is called
[2025-12-24 03:03:13] 2025-12-24 08:02:41,195 | INFO     | --- collectZombieJob: --- 10, [1856779]
[2025-12-24 03:03:13] 2025-12-24 08:02:41,195 | INFO     | zombie collector waiting for pid 1856779
[2025-12-24 03:03:13] 2025-12-24 08:02:41,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-24 03:03:13] 2025-12-24 08:02:41,195 | INFO     | collected zombie processes
[2025-12-24 03:03:13] 2025-12-24 08:02:41,195 | INFO     | will attempt to kill all subprocesses of pid=1856779
[2025-12-24 03:03:13] 2025-12-24 08:02:41,387 | INFO     | process IDs to be killed: [1856779] (in reverse order)
[2025-12-24 03:03:13] 2025-12-24 08:02:41,454 | WARNING  | found no corresponding commands to process id(s)
[2025-12-24 03:03:13] 2025-12-24 08:02:41,455 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-24 03:03:13] 2025-12-24 08:02:41,463 | INFO     | did not find any defunct processes belonging to 1856779
[2025-12-24 03:03:13] 2025-12-24 08:02:41,469 | INFO     | did not find any defunct processes belonging to 1856779
[2025-12-24 03:03:13] 2025-12-24 08:02:41,469 | INFO     | ready for new job
[2025-12-24 03:03:13] 2025-12-24 08:02:41,469 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-24 03:03:13] 2025-12-24 08:02:41,471 | INFO     | ***************************************
[2025-12-24 03:03:13] 2025-12-24 08:02:41,472 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-24 03:03:13] 2025-12-24 08:02:41,472 | INFO     | ***************************************
[2025-12-24 03:03:13] 2025-12-24 08:02:41,472 | INFO     | 
[2025-12-24 03:03:13] 2025-12-24 08:02:41,475 | INFO     | architecture information:
[2025-12-24 03:03:13] 2025-12-24 08:02:41,475 | INFO     | executing command: cat /etc/os-release
[2025-12-24 03:03:13] 2025-12-24 08:02:41,486 | INFO     | cat /etc/os-release:
[2025-12-24 03:03:13] NAME="CentOS Linux"
[2025-12-24 03:03:13] VERSION="7 (Core)"
[2025-12-24 03:03:13] ID="centos"
[2025-12-24 03:03:13] ID_LIKE="rhel fedora"
[2025-12-24 03:03:13] VERSION_ID="7"
[2025-12-24 03:03:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-24 03:03:13] ANSI_COLOR="0;31"
[2025-12-24 03:03:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-24 03:03:13] HOME_URL="https://www.centos.org/"
[2025-12-24 03:03:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-24 03:03:13] 
[2025-12-24 03:03:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-24 03:03:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-24 03:03:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-24 03:03:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-24 03:03:13] 
[2025-12-24 03:03:13] 2025-12-24 08:02:41,486 | INFO     | ***************************************
[2025-12-24 03:03:13] 2025-12-24 08:02:41,989 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-24 03:03:13] 2025-12-24 08:02:42,001 | INFO     | sufficient remaining disk space (127165005824 B)
[2025-12-24 03:03:13] 2025-12-24 08:02:42,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-24 03:03:13] 2025-12-24 08:02:42,001 | INFO     | current server update state: UPDATING_FINAL
[2025-12-24 03:03:13] 2025-12-24 08:02:42,001 | INFO     | update_server=False
[2025-12-24 03:03:13] 2025-12-24 08:02:42,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-24 03:03:13] 2025-12-24 08:02:42,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-24 03:03:13] 2025-12-24 08:02:42,002 | INFO     | aborting loop
[2025-12-24 03:03:13] 2025-12-24 08:02:42,038 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-24 03:03:13] 2025-12-24 08:02:42,111 | INFO     | all job control threads have been joined
[2025-12-24 03:03:13] 2025-12-24 08:02:42,888 | INFO     | all data control threads have been joined
[2025-12-24 03:03:13] 2025-12-24 08:02:43,007 | INFO     | [job] retrieve thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:43,008 | INFO     | [job] job monitor thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:43,117 | INFO     | [job] control thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:43,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-24 03:03:13] 2025-12-24 08:02:43,180 | INFO     | all payload control threads have been joined
[2025-12-24 03:03:13] 2025-12-24 08:02:43,334 | INFO     | [job] validate thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:43,450 | INFO     | [job] create_data_payload thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:43,639 | INFO     | [payload] execute_payloads thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:43,667 | INFO     | [payload] validate_pre thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:43,894 | INFO     | [data] control thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:44,043 | INFO     | [data] copytool_out thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:44,179 | INFO     | [data] copytool_in thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:44,185 | INFO     | [payload] control thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:44,311 | INFO     | [payload] failed_post thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:44,487 | INFO     | [payload] validate_post thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:44,897 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-24 03:03:13] 2025-12-24 08:02:45,903 | INFO     | [job] queue monitor thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:47,127 | INFO     | [data] queue_monitor thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:52,333 | INFO     | job.realtimelogging is not enabled
[2025-12-24 03:03:13] 2025-12-24 08:02:53,339 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-24 03:03:13] 2025-12-24 08:02:57,206 | INFO     | [monitor] cgroup control has ended
[2025-12-24 03:03:13] 2025-12-24 08:02:59,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140677780543296)>', '<ExcThread(monitor, started 140677140698880)>']
[2025-12-24 03:03:13] 2025-12-24 08:03:04,100 | INFO     | all workflow threads have been joined
[2025-12-24 03:03:13] 2025-12-24 08:03:04,100 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-24 03:03:13] 2025-12-24 08:03:04,101 | INFO     | traces error code: 0
[2025-12-24 03:03:13] 2025-12-24 08:03:04,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-24 03:03:13] 2025-12-24 08:03:12,924 | INFO     | PID=1850156 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-24 03:03:13] 2025-12-24 08:03:12,924 | INFO     | .. there are 5 such processes running
[2025-12-24 03:03:13] 2025-12-24 08:03:12,924 | INFO     | found 0 job(s) in 20 queues
[2025-12-24 03:03:13] 2025-12-24 08:03:12,924 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-24 03:03:13] 2025-12-24 08:03:12,924 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-24 03:03:13] 2025-12-24 08:03:12,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-24 03:03:13] 2025-12-24 08:03:12,924 | INFO     | [monitor] control thread has ended
[2025-12-24 03:03:13] 2025-12-24 08:03:13,017 [wrapper] ==== pilot stdout END ====
[2025-12-24 03:03:13] 2025-12-24 08:03:13,020 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-24 03:03:13] 2025-12-24 08:03:13,022 [wrapper] pilotpid: 1850156
[2025-12-24 03:03:13] 2025-12-24 08:03:13,024 [wrapper] Pilot exit status: 0
[2025-12-24 03:03:13] 2025-12-24 08:03:13,031 [wrapper] pandaids: 6938199051
[2025-12-24 03:03:13] 2025-12-24 08:03:13,083 [wrapper] cleanup supervisor_pilot 2442349 1850157
[2025-12-24 03:03:13] 2025-12-24 08:03:13,086 [wrapper] Test setup, not cleaning
[2025-12-24 03:03:13] 2025-12-24 08:03:13,088 [wrapper] apfmon messages muted
[2025-12-24 03:03:13] 2025-12-24 08:03:13,090 [wrapper] ==== wrapper stdout END ====
[2025-12-24 03:03:13] 2025-12-24 08:03:13,091 [wrapper] ==== wrapper stderr END ====
[2025-12-24 03:03:13]  *** Error codes and diagnostics ***
[2025-12-24 03:03:13]     "exeErrorCode": 0,
[2025-12-24 03:03:13]     "exeErrorDiag": "",
[2025-12-24 03:03:13]     "pilotErrorCode": 0,
[2025-12-24 03:03:13]     "pilotErrorDiag": "",
[2025-12-24 03:03:13]  *** Listing of results directory ***
[2025-12-24 03:03:13] total 1365668
[2025-12-24 03:03:13] -rwx------. 1 boincer umatlas     36322 Dec 20 00:09 runpilot2-wrapper.sh
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas      5112 Dec 20 00:13 queuedata.json
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas    579449 Dec 20 00:13 pilot3.tar.gz
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas       100 Dec 23 22:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-24 03:03:13] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 23 22:03 run_atlas
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas       105 Dec 23 22:03 job.xml
[2025-12-24 03:03:13] -rw-r--r--. 2 boincer umatlas 413464419 Dec 23 22:03 EVNT.47961955._000016.pool.root.1
[2025-12-24 03:03:13] -rw-r--r--. 2 boincer umatlas     15847 Dec 23 22:03 start_atlas.sh
[2025-12-24 03:03:13] drwxrwx--x. 2 boincer umatlas      4096 Dec 23 22:03 shared
[2025-12-24 03:03:13] -rw-r--r--. 2 boincer umatlas    592602 Dec 23 22:03 input.tar.gz
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas         0 Dec 23 22:03 boinc_lockfile
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas      2878 Dec 23 22:03 pandaJob.out
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas        57 Dec 23 22:03 setup.sh.local
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas    987357 Dec 23 22:03 agis_schedconf.cvmfs.json
[2025-12-24 03:03:13] drwx------. 5 boincer umatlas      4096 Dec 23 22:03 pilot3
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas       532 Dec 24 02:57 boinc_task_state.xml
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas 972545125 Dec 24 03:02 HITS.47961959._000158.pool.root.1
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas      6951 Dec 24 03:02 init_data.xml
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas        95 Dec 24 03:02 pilot_heartbeat.json
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas      1051 Dec 24 03:02 memory_monitor_summary.json
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas   1516240 Dec 24 03:02 agis_ddmendpoints.agis.ALL.json
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas   1709212 Dec 24 03:02 log.47961959._000158.job.log.tgz.1
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas      8588 Dec 24 03:02 heartbeat.json
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas        29 Dec 24 03:03 wrapper_checkpoint.txt
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas      8192 Dec 24 03:03 boinc_mmap_file
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas       822 Dec 24 03:03 pilotlog.txt
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas   2550727 Dec 24 03:03 log.47961959._000158.job.log.1
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas       353 Dec 24 03:03 output.list
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas       620 Dec 24 03:03 runtime_log
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas   4280320 Dec 24 03:03 result.tar.gz
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas      9338 Dec 24 03:03 runtime_log.err
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas       660 Dec 24 03:03 mIYLDmKO4q8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEmcKDmxP821m.diag
[2025-12-24 03:03:13] -rw-r--r--. 1 boincer umatlas     21251 Dec 24 03:03 stderr.txt
[2025-12-24 03:03:13] HITS file was successfully produced:
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas 972545125 Dec 24 03:02 shared/HITS.pool.root.1
[2025-12-24 03:03:13]  *** Contents of shared directory: ***
[2025-12-24 03:03:13] total 1358308
[2025-12-24 03:03:13] -rw-r--r--. 2 boincer umatlas 413464419 Dec 23 22:03 ATLAS.root_0
[2025-12-24 03:03:13] -rw-r--r--. 2 boincer umatlas     15847 Dec 23 22:03 start_atlas.sh
[2025-12-24 03:03:13] -rw-r--r--. 2 boincer umatlas    592602 Dec 23 22:03 input.tar.gz
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas 972545125 Dec 24 03:02 HITS.pool.root.1
[2025-12-24 03:03:13] -rw-------. 1 boincer umatlas   4280320 Dec 24 03:03 result.tar.gz
03:03:14 (1846187): run_atlas exited; CPU time 148058.504623
03:03:14 (1846187): called boinc_finish(0)

</stderr_txt>
]]>

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