Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:24:48 (2442): wrapper (7.7.26015): starting
15:24:48 (2442): wrapper: running run_atlas (--nthreads 8)
[2025-12-23 15:24:48] Arguments: --nthreads 8
[2025-12-23 15:24:48] Threads: 8
[2025-12-23 15:24:48] Checking for CVMFS
[2025-12-23 15:24:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-23 15:24:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-23 15:24:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-23 15:24:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-23 15:24:51] 2.11.2.0 21086 11050 84048 154336 1 89 18349877 25165824 2525 130560 0 6200804 99.829 3161633 2135 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-23 15:24:51] CVMFS is ok
[2025-12-23 15:24:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-23 15:24:52] Checking for apptainer binary...
[2025-12-23 15:24:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-23 15:24:52] Running /usr/bin/apptainer --version
[2025-12-23 15:24:52] apptainer version 1.3.2-1.el7
[2025-12-23 15:24:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-23 15:24:58] cg-vwn408.simple-grid.lan
[2025-12-23 15:24:58] apptainer works
[2025-12-23 15:24:58] Set ATHENA_PROC_NUMBER=8
[2025-12-23 15:24:58] Set ATHENA_CORE_NUMBER=8
[2025-12-23 15:24:58] Starting ATLAS job with PandaID=6931295476
[2025-12-23 15:24:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-23 19:07:50]  *** The last 200 lines of the pilot log: ***
[2025-12-23 19:07:50] 2025-12-23 18:06:45,368 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-23 19:07:50] 2025-12-23 18:06:45,370 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-23 19:07:50] 2025-12-23 18:06:45,372 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6931295476/memory_monitor_summary.json (trf name=prmon)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,372 | INFO     | extracted standard info from prmon json
[2025-12-23 19:07:50] 2025-12-23 18:06:45,372 | INFO     | extracted standard memory fields from prmon json
[2025-12-23 19:07:50] 2025-12-23 18:06:45,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-23 19:07:50] 2025-12-23 18:06:45,373 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-23 19:07:50] 2025-12-23 18:06:45,373 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-23 19:07:50] 2025-12-23 18:06:45,378 | INFO     | fitting pss+swap vs Time
[2025-12-23 19:07:50] 2025-12-23 18:06:45,379 | INFO     | sum of square deviations: 2710627567.5
[2025-12-23 19:07:50] 2025-12-23 18:06:45,381 | INFO     | sum of deviations: 51015530065.000015
[2025-12-23 19:07:50] 2025-12-23 18:06:45,381 | INFO     | mean x: 1766506808.5
[2025-12-23 19:07:50] 2025-12-23 18:06:45,381 | INFO     | mean y: 2449789.4174757283
[2025-12-23 19:07:50] 2025-12-23 18:06:45,381 | INFO     | intersect: -33244198433.147305
[2025-12-23 19:07:50] 2025-12-23 18:06:45,381 | INFO     | chi2: 5.83060072057769
[2025-12-23 19:07:50] 2025-12-23 18:06:45,382 | INFO     | sum of square deviations: 2518000700.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,384 | INFO     | sum of deviations: 63201389716.000015
[2025-12-23 19:07:50] 2025-12-23 18:06:45,384 | INFO     | mean x: 1766506656.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,384 | INFO     | mean y: 2459223.4378109453
[2025-12-23 19:07:50] 2025-12-23 18:06:45,384 | INFO     | intersect: -44336557680.63373
[2025-12-23 19:07:50] 2025-12-23 18:06:45,384 | INFO     | chi2: 5.114010817997468
[2025-12-23 19:07:50] 2025-12-23 18:06:45,385 | INFO     | current chi2=5.114010817997468 (change=12.290155627552952 %)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,385 | INFO     | right removable region: 200
[2025-12-23 19:07:50] 2025-12-23 18:06:45,385 | INFO     | sum of square deviations: 2518000700.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,394 | INFO     | sum of deviations: -16808475092.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,407 | INFO     | mean x: 1766506961.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,408 | INFO     | mean y: 2503418.5572139304
[2025-12-23 19:07:50] 2025-12-23 18:06:45,408 | INFO     | intersect: 11794512949.695595
[2025-12-23 19:07:50] 2025-12-23 18:06:45,408 | INFO     | chi2: 1.5246144964433102
[2025-12-23 19:07:50] 2025-12-23 18:06:45,408 | INFO     | current chi2=1.5246144964433102 (change=73.85150228067319 %)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,409 | INFO     | sum of square deviations: 2334722845.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,410 | INFO     | sum of deviations: -36308369247.99999
[2025-12-23 19:07:50] 2025-12-23 18:06:45,410 | INFO     | mean x: 1766507113.5
[2025-12-23 19:07:50] 2025-12-23 18:06:45,411 | INFO     | mean y: 2519470.0408163266
[2025-12-23 19:07:50] 2025-12-23 18:06:45,411 | INFO     | intersect: 27474299554.574417
[2025-12-23 19:07:50] 2025-12-23 18:06:45,411 | INFO     | chi2: 0.9450358446874654
[2025-12-23 19:07:50] 2025-12-23 18:06:45,411 | INFO     | current chi2=0.9450358446874654 (change=38.01476721544444 %)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,412 | INFO     | sum of square deviations: 2160561440.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,413 | INFO     | sum of deviations: -30247990700.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,413 | INFO     | mean x: 1766507266.0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,414 | INFO     | mean y: 2514154.848167539
[2025-12-23 19:07:50] 2025-12-23 18:06:45,414 | INFO     | intersect: 24733722610.29965
[2025-12-23 19:07:50] 2025-12-23 18:06:45,414 | INFO     | chi2: 0.9312285522674086
[2025-12-23 19:07:50] 2025-12-23 18:06:45,414 | INFO     | current chi2=0.9312285522674086 (change=1.4610337266755182 %)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,414 | INFO     | left removable region: 30
[2025-12-23 19:07:50] 2025-12-23 18:06:45,415 | INFO     | sum of square deviations: 1523386702.5
[2025-12-23 19:07:50] 2025-12-23 18:06:45,416 | INFO     | sum of deviations: 4260718575.5
[2025-12-23 19:07:50] 2025-12-23 18:06:45,416 | INFO     | mean x: 1766507540.5
[2025-12-23 19:07:50] 2025-12-23 18:06:45,416 | INFO     | mean y: 2503937.064705882
[2025-12-23 19:07:50] 2025-12-23 18:06:45,417 | INFO     | intersect: -4938192656.398679
[2025-12-23 19:07:50] 2025-12-23 18:06:45,417 | INFO     | chi2: 0.00020029277059221314
[2025-12-23 19:07:50] 2025-12-23 18:06:45,417 | INFO     | current memory leak: 2.80 B/s (using 170 data points, chi2=0.00)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,418 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,418 | INFO     | ..............................
[2025-12-23 19:07:50] 2025-12-23 18:06:45,418 | INFO     | . Timing measurements:
[2025-12-23 19:07:50] 2025-12-23 18:06:45,418 | INFO     | . get job = 0 s
[2025-12-23 19:07:50] 2025-12-23 18:06:45,418 | INFO     | . initial setup = 8 s
[2025-12-23 19:07:50] 2025-12-23 18:06:45,418 | INFO     | . payload setup = 135 s
[2025-12-23 19:07:50] 2025-12-23 18:06:45,419 | INFO     | . stage-in = 0 s
[2025-12-23 19:07:50] 2025-12-23 18:06:45,419 | INFO     | . payload execution = 12696 s
[2025-12-23 19:07:50] 2025-12-23 18:06:45,419 | INFO     | . stage-out = 3 s
[2025-12-23 19:07:50] 2025-12-23 18:06:45,419 | INFO     | . log creation = 1 s
[2025-12-23 19:07:50] 2025-12-23 18:06:45,419 | INFO     | ..............................
[2025-12-23 19:07:50] 2025-12-23 18:06:45,457 | INFO     | time since job start (13107s) is within the limit (174528.0s)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,615 | INFO     | 
[2025-12-23 19:07:50] 2025-12-23 18:06:45,615 | INFO     | job summary report
[2025-12-23 19:07:50] 2025-12-23 18:06:45,615 | INFO     | --------------------------------------------------
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | PanDA job id: 6931295476
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | task id: 47898878
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | errors: (none)
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | pilot state: finished 
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | transexitcode: 0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | exeerrorcode: 0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | exeerrordiag: 
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | exitcode: 0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | exitmsg: OK
[2025-12-23 19:07:50] 2025-12-23 18:06:45,616 | INFO     | cpuconsumptiontime: 47650 s
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | nevents: 400
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | neventsw: 0
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | pid: 12800
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | pgrp: 12800
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | corecount: 8
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | event service: False
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | sizes: {0: 2283066, 1: 2283751, 2: 2283950, 13: 2283950, 23: 2284006, 34: 2284034, 45: 2284190, 55: 2284218, 66: 2284246, 77: 2284274, 84: 2284592, 87: 2284900, 12
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | --------------------------------------------------
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | 
[2025-12-23 19:07:50] 2025-12-23 18:06:45,617 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-23 19:07:50] 2025-12-23 18:06:46,088 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,089 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,089 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,089 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,089 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,089 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,089 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,089 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,090 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-23 19:07:50] 2025-12-23 18:06:46,091 | INFO     | job 6931295476 has completed (purged errors)
[2025-12-23 19:07:50] 2025-12-23 18:06:46,091 | INFO     | overall cleanup function is called
[2025-12-23 19:07:50] 2025-12-23 18:06:47,099 | INFO     | --- collectZombieJob: --- 10, [12800]
[2025-12-23 19:07:50] 2025-12-23 18:06:47,099 | INFO     | zombie collector waiting for pid 12800
[2025-12-23 19:07:50] 2025-12-23 18:06:47,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-23 19:07:50] 2025-12-23 18:06:47,100 | INFO     | collected zombie processes
[2025-12-23 19:07:50] 2025-12-23 18:06:47,100 | INFO     | will attempt to kill all subprocesses of pid=12800
[2025-12-23 19:07:50] 2025-12-23 18:06:47,213 | INFO     | process IDs to be killed: [12800] (in reverse order)
[2025-12-23 19:07:50] 2025-12-23 18:06:47,850 | WARNING  | found no corresponding commands to process id(s)
[2025-12-23 19:07:50] 2025-12-23 18:06:47,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-23 19:07:50] 2025-12-23 18:06:47,853 | INFO     | did not find any defunct processes belonging to 12800
[2025-12-23 19:07:50] 2025-12-23 18:06:47,855 | INFO     | did not find any defunct processes belonging to 12800
[2025-12-23 19:07:50] 2025-12-23 18:06:47,856 | INFO     | ready for new job
[2025-12-23 19:07:50] 2025-12-23 18:06:47,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-23 19:07:50] 2025-12-23 18:06:47,857 | INFO     | ***************************************
[2025-12-23 19:07:50] 2025-12-23 18:06:47,858 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-23 19:07:50] 2025-12-23 18:06:47,858 | INFO     | ***************************************
[2025-12-23 19:07:50] 2025-12-23 18:06:47,858 | INFO     | 
[2025-12-23 19:07:50] 2025-12-23 18:06:47,858 | INFO     | pilot is running in a VM
[2025-12-23 19:07:50] 2025-12-23 18:06:47,858 | INFO     | architecture information:
[2025-12-23 19:07:50] 2025-12-23 18:06:47,878 | INFO     | executing command: cat /etc/os-release
[2025-12-23 19:07:50] 2025-12-23 18:06:48,127 | INFO     | cat /etc/os-release:
[2025-12-23 19:07:50] NAME="CentOS Linux"
[2025-12-23 19:07:50] VERSION="7 (Core)"
[2025-12-23 19:07:50] ID="centos"
[2025-12-23 19:07:50] ID_LIKE="rhel fedora"
[2025-12-23 19:07:50] VERSION_ID="7"
[2025-12-23 19:07:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-23 19:07:50] ANSI_COLOR="0;31"
[2025-12-23 19:07:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-23 19:07:50] HOME_URL="https://www.centos.org/"
[2025-12-23 19:07:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-23 19:07:50] 
[2025-12-23 19:07:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-23 19:07:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-23 19:07:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-23 19:07:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-23 19:07:50] 
[2025-12-23 19:07:50] 2025-12-23 18:06:48,127 | INFO     | ***************************************
[2025-12-23 19:07:50] 2025-12-23 18:06:48,630 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-23 19:07:50] 2025-12-23 18:06:48,834 | INFO     | sufficient remaining disk space (497955110912 B)
[2025-12-23 19:07:50] 2025-12-23 18:06:48,834 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-23 19:07:50] 2025-12-23 18:06:48,834 | INFO     | current server update state: UPDATING_FINAL
[2025-12-23 19:07:50] 2025-12-23 18:06:48,834 | INFO     | update_server=False
[2025-12-23 19:07:50] 2025-12-23 18:06:48,834 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-23 19:07:50] 2025-12-23 18:06:48,909 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-23 19:07:50] 2025-12-23 18:06:48,913 | INFO     | all data control threads have been joined
[2025-12-23 19:07:50] 2025-12-23 18:06:48,961 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-23 19:07:50] 2025-12-23 18:06:49,248 | INFO     | all payload control threads have been joined
[2025-12-23 19:07:50] 2025-12-23 18:06:49,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-23 19:07:50] 2025-12-23 18:06:49,615 | INFO     | aborting loop
[2025-12-23 19:07:50] 2025-12-23 18:06:49,840 | INFO     | [job] retrieve thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:49,895 | INFO     | [payload] execute_payloads thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:49,919 | INFO     | [data] control thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:49,929 | INFO     | all job control threads have been joined
[2025-12-23 19:07:50] 2025-12-23 18:06:50,078 | INFO     | [job] create_data_payload thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,187 | INFO     | [payload] validate_pre thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,254 | INFO     | [payload] control thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,456 | INFO     | [data] copytool_in thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,539 | INFO     | [job] validate thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,577 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-23 19:07:50] 2025-12-23 18:06:50,621 | INFO     | [job] job monitor thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,854 | INFO     | [payload] validate_post thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,935 | INFO     | [job] control thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:50,969 | INFO     | [data] copytool_out thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:51,227 | INFO     | [payload] failed_post thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:51,583 | INFO     | [job] queue monitor thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:06:52,918 | INFO     | [data] queue_monitor thread has finished
[2025-12-23 19:07:50] 2025-12-23 18:07:18,659 | INFO     | PID=6206 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-23 19:07:50] 2025-12-23 18:07:18,659 | INFO     | .. there are 9 such processes running
[2025-12-23 19:07:50] 2025-12-23 18:07:18,664 | INFO     | found 0 job(s) in 20 queues
[2025-12-23 19:07:50] 2025-12-23 18:07:18,664 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-23 19:07:50] 2025-12-23 18:07:18,664 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-23 19:07:50] 2025-12-23 18:07:39,679 | INFO     | [monitor] cgroup control has ended
[2025-12-23 19:07:50] 2025-12-23 18:07:41,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320978003776)>', '<ExcThread(monitor, started 140320389977856)>']
[2025-12-23 19:07:50] 2025-12-23 18:07:41,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-23 19:07:50] 2025-12-23 18:07:41,800 | INFO     | [monitor] control thread has ended
[2025-12-23 19:07:50] 2025-12-23 18:07:46,704 | INFO     | all workflow threads have been joined
[2025-12-23 19:07:50] 2025-12-23 18:07:46,704 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-23 19:07:50] 2025-12-23 18:07:46,705 | INFO     | traces error code: 0
[2025-12-23 19:07:50] 2025-12-23 18:07:46,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-23 19:07:50] 2025-12-23 18:07:47,066 [wrapper] ==== pilot stdout END ====
[2025-12-23 19:07:50] 2025-12-23 18:07:47,181 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-23 19:07:50] 2025-12-23 18:07:47,276 [wrapper] pilotpid: 6206
[2025-12-23 19:07:50] 2025-12-23 18:07:47,328 [wrapper] Pilot exit status: 0
[2025-12-23 19:07:50] 2025-12-23 18:07:47,690 [wrapper] pandaids: 6931295476
[2025-12-23 19:07:50] 2025-12-23 18:07:48,454 [wrapper] cleanup supervisor_pilot  2854 6207
[2025-12-23 19:07:50] 2025-12-23 18:07:48,560 [wrapper] Test setup, not cleaning
[2025-12-23 19:07:50] 2025-12-23 18:07:48,638 [wrapper] apfmon messages muted
[2025-12-23 19:07:50] 2025-12-23 18:07:48,737 [wrapper] ==== wrapper stdout END ====
[2025-12-23 19:07:50] 2025-12-23 18:07:48,874 [wrapper] ==== wrapper stderr END ====
[2025-12-23 19:07:50]  *** Error codes and diagnostics ***
[2025-12-23 19:07:50]     "exeErrorCode": 0,
[2025-12-23 19:07:50]     "exeErrorDiag": "",
[2025-12-23 19:07:50]     "pilotErrorCode": 0,
[2025-12-23 19:07:50]     "pilotErrorDiag": "",
[2025-12-23 19:07:50]  *** Listing of results directory ***
[2025-12-23 19:07:50] total 380188
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc    579449 Dec 15 04:37 pilot3.tar.gz
[2025-12-23 19:07:50] -rwx------. 1 boinc boinc     36322 Dec 15 04:40 runpilot2-wrapper.sh
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc      5112 Dec 15 04:42 queuedata.json
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc       100 Dec 23 15:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-23 19:07:50] -rwxr-xr-x. 1 boinc boinc      7986 Dec 23 15:24 run_atlas
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc       105 Dec 23 15:24 job.xml
[2025-12-23 19:07:50] -rw-r--r--. 2 boinc boinc 198785579 Dec 23 15:24 EVNT.47898875._000116.pool.root.1
[2025-12-23 19:07:50] drwxrwx--x. 2 boinc boinc        68 Dec 23 15:24 shared
[2025-12-23 19:07:50] -rw-r--r--. 2 boinc boinc    592394 Dec 23 15:24 input.tar.gz
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc      6391 Dec 23 15:24 init_data.xml
[2025-12-23 19:07:50] -rw-r--r--. 2 boinc boinc     15847 Dec 23 15:24 start_atlas.sh
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc         0 Dec 23 15:24 boinc_lockfile
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc      2500 Dec 23 15:24 pandaJob.out
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc    987824 Dec 23 15:28 agis_schedconf.cvmfs.json
[2025-12-23 19:07:50] drwx------. 5 boinc boinc      4096 Dec 23 15:28 pilot3
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc 182246685 Dec 23 19:03 HITS.47898878._002912.pool.root.1
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc       531 Dec 23 19:03 boinc_task_state.xml
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc      1028 Dec 23 19:04 memory_monitor_summary.json
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc   1516240 Dec 23 19:05 agis_ddmendpoints.agis.ALL.json
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc    427958 Dec 23 19:05 log.47898878._002912.job.log.tgz.1
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc      7775 Dec 23 19:06 heartbeat.json
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc      8192 Dec 23 19:07 boinc_mmap_file
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc        28 Dec 23 19:07 wrapper_checkpoint.txt
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc        95 Dec 23 19:07 pilot_heartbeat.json
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc      4883 Dec 23 19:07 pilotlog.txt
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc   1762480 Dec 23 19:07 log.47898878._002912.job.log.1
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc       357 Dec 23 19:07 output.list
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc       620 Dec 23 19:07 runtime_log
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc   2211840 Dec 23 19:07 result.tar.gz
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc      8817 Dec 23 19:07 runtime_log.err
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc       657 Dec 23 19:07 ck4NDmDdEp8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWmSKDm5BnWHn.diag
[2025-12-23 19:07:50] -rw-r--r--. 1 boinc boinc     20767 Dec 23 19:07 stderr.txt
[2025-12-23 19:07:50] HITS file was successfully produced:
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc 182246685 Dec 23 19:03 shared/HITS.pool.root.1
[2025-12-23 19:07:50]  *** Contents of shared directory: ***
[2025-12-23 19:07:50] total 374860
[2025-12-23 19:07:50] -rw-r--r--. 2 boinc boinc 198785579 Dec 23 15:24 ATLAS.root_0
[2025-12-23 19:07:50] -rw-r--r--. 2 boinc boinc    592394 Dec 23 15:24 input.tar.gz
[2025-12-23 19:07:50] -rw-r--r--. 2 boinc boinc     15847 Dec 23 15:24 start_atlas.sh
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc 182246685 Dec 23 19:03 HITS.pool.root.1
[2025-12-23 19:07:50] -rw-------. 1 boinc boinc   2211840 Dec 23 19:07 result.tar.gz
19:07:52 (2442): run_atlas exited; CPU time 47803.920713
19:07:52 (2442): called boinc_finish(0)

</stderr_txt>
]]>

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