Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:20:23 (1253848): wrapper (7.7.26015): starting
07:20:23 (1253848): wrapper: running run_atlas (--nthreads 4)
[2025-12-23 07:20:23] Arguments: --nthreads 4
[2025-12-23 07:20:23] Threads: 4
[2025-12-23 07:20:23] Checking for CVMFS
[2025-12-23 07:20:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-23 07:20:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-23 07:20:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-23 07:20:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-23 07:20:26] 2.9.2.0 1254044 0 30040 154324 4 1 20707744 36864000 0 130560 0 0 0.000 1335 828 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-23 07:20:26] CVMFS is ok
[2025-12-23 07:20:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-23 07:20:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-23 07:20:26] Further information can be found at the LHC@home message board.
[2025-12-23 07:20:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-23 07:20:26] Checking for apptainer binary...
[2025-12-23 07:20:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-23 07:20:26] Running /usr/bin/apptainer --version
[2025-12-23 07:20:27] apptainer version 1.4.1-1.1
[2025-12-23 07:20:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-23 07:20:27] thA334
[2025-12-23 07:20:27] apptainer works
[2025-12-23 07:20:27] Set ATHENA_PROC_NUMBER=4
[2025-12-23 07:20:27] Set ATHENA_CORE_NUMBER=4
[2025-12-23 07:20:27] Starting ATLAS job with PandaID=6929482546
[2025-12-23 07:20:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-23 08:57:48]  *** The last 200 lines of the pilot log: ***
[2025-12-23 08:57:48] 2025-12-23 07:57:09,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-23 08:57:48] 2025-12-23 07:57:09,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-23 08:57:48] 2025-12-23 07:57:09,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-23 08:57:48] 2025-12-23 07:57:09,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-23 08:57:48] 2025-12-23 07:57:09,284 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-23 08:57:48] 2025-12-23 07:57:09,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-23 08:57:48] 2025-12-23 07:57:09,285 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-23 08:57:48] 2025-12-23 07:57:09,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-23 08:57:48] 2025-12-23 07:57:09,285 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-23 08:57:48] 2025-12-23 07:57:09,285 | INFO     | job 6929482546 has completed (purged errors)
[2025-12-23 08:57:48] 2025-12-23 07:57:09,285 | INFO     | overall cleanup function is called
[2025-12-23 08:57:48] 2025-12-23 07:57:09,646 | INFO     | PID=1258187 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-23 08:57:48] 2025-12-23 07:57:10,292 | INFO     | --- collectZombieJob: --- 10, [1264765]
[2025-12-23 08:57:48] 2025-12-23 07:57:10,292 | INFO     | zombie collector waiting for pid 1264765
[2025-12-23 08:57:48] 2025-12-23 07:57:10,292 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-23 08:57:48] 2025-12-23 07:57:10,292 | INFO     | collected zombie processes
[2025-12-23 08:57:48] 2025-12-23 07:57:10,292 | INFO     | will attempt to kill all subprocesses of pid=1264765
[2025-12-23 08:57:48] 2025-12-23 07:57:10,335 | INFO     | process IDs to be killed: [1264765] (in reverse order)
[2025-12-23 08:57:48] 2025-12-23 07:57:10,365 | WARNING  | found no corresponding commands to process id(s)
[2025-12-23 08:57:48] 2025-12-23 07:57:10,366 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-23 08:57:48] 2025-12-23 07:57:10,367 | INFO     | did not find any defunct processes belonging to 1264765
[2025-12-23 08:57:48] 2025-12-23 07:57:10,368 | INFO     | did not find any defunct processes belonging to 1264765
[2025-12-23 08:57:48] 2025-12-23 07:57:10,369 | INFO     | ready for new job
[2025-12-23 08:57:48] 2025-12-23 07:57:10,369 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-23 08:57:48] 2025-12-23 07:57:10,369 | INFO     | ***************************************
[2025-12-23 08:57:48] 2025-12-23 07:57:10,369 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-23 08:57:48] 2025-12-23 07:57:10,369 | INFO     | ***************************************
[2025-12-23 08:57:48] 2025-12-23 07:57:10,369 | INFO     | 
[2025-12-23 08:57:48] 2025-12-23 07:57:10,370 | INFO     | architecture information:
[2025-12-23 08:57:48] 2025-12-23 07:57:10,370 | INFO     | executing command: cat /etc/os-release
[2025-12-23 08:57:48] 2025-12-23 07:57:10,382 | INFO     | cat /etc/os-release:
[2025-12-23 08:57:48] NAME="CentOS Linux"
[2025-12-23 08:57:48] VERSION="7 (Core)"
[2025-12-23 08:57:48] ID="centos"
[2025-12-23 08:57:48] ID_LIKE="rhel fedora"
[2025-12-23 08:57:48] VERSION_ID="7"
[2025-12-23 08:57:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-23 08:57:48] ANSI_COLOR="0;31"
[2025-12-23 08:57:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-23 08:57:48] HOME_URL="https://www.centos.org/"
[2025-12-23 08:57:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-23 08:57:48] 
[2025-12-23 08:57:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-23 08:57:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-23 08:57:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-23 08:57:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-23 08:57:48] 
[2025-12-23 08:57:48] 2025-12-23 07:57:10,383 | INFO     | ***************************************
[2025-12-23 08:57:48] 2025-12-23 07:57:10,886 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-23 08:57:48] 2025-12-23 07:57:10,903 | INFO     | sufficient remaining disk space (240566403072 B)
[2025-12-23 08:57:48] 2025-12-23 07:57:10,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-23 08:57:48] 2025-12-23 07:57:10,904 | INFO     | current server update state: UPDATING_FINAL
[2025-12-23 08:57:48] 2025-12-23 07:57:10,904 | INFO     | update_server=False
[2025-12-23 08:57:48] 2025-12-23 07:57:10,904 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-23 08:57:48] 2025-12-23 07:57:10,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-23 08:57:48] 2025-12-23 07:57:10,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-23 08:57:48] 2025-12-23 07:57:11,059 | INFO     | all payload control threads have been joined
[2025-12-23 08:57:48] 2025-12-23 07:57:11,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-23 08:57:48] 2025-12-23 07:57:11,176 | INFO     | aborting loop
[2025-12-23 08:57:48] 2025-12-23 07:57:11,638 | INFO     | all data control threads have been joined
[2025-12-23 08:57:48] 2025-12-23 07:57:11,669 | INFO     | all job control threads have been joined
[2025-12-23 08:57:48] 2025-12-23 07:57:11,909 | INFO     | [job] retrieve thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:11,910 | INFO     | [job] queue monitor thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:11,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-23 08:57:48] 2025-12-23 07:57:12,006 | INFO     | [data] copytool_in thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:12,065 | INFO     | [payload] control thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:12,123 | INFO     | [payload] failed_post thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:12,182 | INFO     | [job] job monitor thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:12,277 | INFO     | [payload] execute_payloads thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:12,644 | INFO     | [data] control thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:12,675 | INFO     | [job] control thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:12,917 | INFO     | [payload] validate_post thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:12,954 | INFO     | [job] validate thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:13,057 | INFO     | [job] create_data_payload thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:13,103 | INFO     | [payload] validate_pre thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:13,968 | INFO     | [data] copytool_out thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:14,911 | INFO     | [data] queue_monitor thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:21,573 | INFO     | job.realtimelogging is not enabled
[2025-12-23 08:57:48] 2025-12-23 07:57:22,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-23 08:57:48] 2025-12-23 07:57:41,784 | INFO     | PID=1258187 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-23 08:57:48] 2025-12-23 07:57:41,784 | INFO     | found 0 job(s) in 20 queues
[2025-12-23 08:57:48] 2025-12-23 07:57:41,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-23 08:57:48] 2025-12-23 07:57:41,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-23 08:57:48] 2025-12-23 07:57:42,383 | INFO     | [monitor] cgroup control has ended
[2025-12-23 08:57:48] 2025-12-23 07:57:42,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990885181248)>', '<ExcThread(monitor, started 139990013040384)>']
[2025-12-23 08:57:48] 2025-12-23 07:57:43,795 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-23 08:57:48] 2025-12-23 07:57:43,795 | INFO     | [monitor] control thread has ended
[2025-12-23 08:57:48] 2025-12-23 07:57:47,912 | INFO     | all workflow threads have been joined
[2025-12-23 08:57:48] 2025-12-23 07:57:47,913 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-23 08:57:48] 2025-12-23 07:57:47,913 | INFO     | traces error code: 0
[2025-12-23 08:57:48] 2025-12-23 07:57:47,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-23 08:57:48] 2025-12-23 07:57:47,982 [wrapper] ==== pilot stdout END ====
[2025-12-23 08:57:48] 2025-12-23 07:57:47,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-23 08:57:48] 2025-12-23 07:57:47,990 [wrapper] pilotpid: 1258187
[2025-12-23 08:57:48] 2025-12-23 07:57:47,993 [wrapper] Pilot exit status: 0
[2025-12-23 08:57:48] 2025-12-23 07:57:48,004 [wrapper] pandaids: 6929482546
[2025-12-23 08:57:48] 2025-12-23 07:57:48,025 [wrapper] cleanup supervisor_pilot 1276919 1258188
[2025-12-23 08:57:48] 2025-12-23 07:57:48,029 [wrapper] Test setup, not cleaning
[2025-12-23 08:57:48] 2025-12-23 07:57:48,032 [wrapper] apfmon messages muted
[2025-12-23 08:57:48] 2025-12-23 07:57:48,036 [wrapper] ==== wrapper stdout END ====
[2025-12-23 08:57:48] 2025-12-23 07:57:48,040 [wrapper] ==== wrapper stderr END ====
[2025-12-23 08:57:48]  *** Error codes and diagnostics ***
[2025-12-23 08:57:48]     "exeErrorCode": 0,
[2025-12-23 08:57:48]     "exeErrorDiag": "",
[2025-12-23 08:57:48]     "pilotErrorCode": 0,
[2025-12-23 08:57:48]     "pilotErrorDiag": "",
[2025-12-23 08:57:48]  *** Listing of results directory ***
[2025-12-23 08:57:48] total 407492
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc      5112 Dec 14 21:38 queuedata.json
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc    579449 Dec 14 21:38 pilot3.tar.gz
[2025-12-23 08:57:48] -rwx------ 1 boinc boinc     36322 Dec 14 21:38 runpilot2-wrapper.sh
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc       100 Dec 23 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-23 08:57:48] -rwxr-xr-x 1 boinc boinc      7986 Dec 23 07:20 run_atlas
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc       105 Dec 23 07:20 job.xml
[2025-12-23 08:57:48] -rw-r--r-- 2 boinc boinc 212816803 Dec 23 07:20 EVNT.47898779._000156.pool.root.1
[2025-12-23 08:57:48] -rw-r--r-- 2 boinc boinc    592391 Dec 23 07:20 input.tar.gz
[2025-12-23 08:57:48] -rw-r--r-- 2 boinc boinc     15847 Dec 23 07:20 start_atlas.sh
[2025-12-23 08:57:48] drwxrwx--x 2 boinc boinc      4096 Dec 23 07:20 shared
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc         0 Dec 23 07:20 boinc_setup_complete
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc      6370 Dec 23 07:20 init_data.xml
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc         0 Dec 23 07:20 boinc_lockfile
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc      2522 Dec 23 07:20 pandaJob.out
[2025-12-23 08:57:48] -rw------- 1 boinc boinc    987824 Dec 23 07:20 agis_schedconf.cvmfs.json
[2025-12-23 08:57:48] -rw------- 1 boinc boinc   1516240 Dec 23 07:20 agis_ddmendpoints.agis.ALL.json
[2025-12-23 08:57:48] drwx------ 5 boinc boinc      4096 Dec 23 07:20 pilot3
[2025-12-23 08:57:48] -rw------- 1 boinc boinc 198303410 Dec 23 08:56 HITS.47898782._003732.pool.root.1
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc       529 Dec 23 08:56 boinc_task_state.xml
[2025-12-23 08:57:48] -rw------- 1 boinc boinc      1017 Dec 23 08:56 memory_monitor_summary.json
[2025-12-23 08:57:48] -rw------- 1 boinc boinc    280583 Dec 23 08:57 log.47898782._003732.job.log.tgz.1
[2025-12-23 08:57:48] -rw------- 1 boinc boinc        95 Dec 23 08:57 pilot_heartbeat.json
[2025-12-23 08:57:48] -rw------- 1 boinc boinc      7751 Dec 23 08:57 heartbeat.json
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc      8192 Dec 23 08:57 boinc_mmap_file
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc        27 Dec 23 08:57 wrapper_checkpoint.txt
[2025-12-23 08:57:48] -rw------- 1 boinc boinc      4824 Dec 23 08:57 pilotlog.txt
[2025-12-23 08:57:48] -rw------- 1 boinc boinc    843041 Dec 23 08:57 log.47898782._003732.job.log.1
[2025-12-23 08:57:48] -rw------- 1 boinc boinc       357 Dec 23 08:57 output.list
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc       620 Dec 23 08:57 runtime_log
[2025-12-23 08:57:48] -rw------- 1 boinc boinc   1146880 Dec 23 08:57 result.tar.gz
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc      8897 Dec 23 08:57 runtime_log.err
[2025-12-23 08:57:48] -rw------- 1 boinc boinc       659 Dec 23 08:57 BIGKDmi27o8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLMWKDmJRpSPn.diag
[2025-12-23 08:57:48] -rw-r--r-- 1 boinc boinc     12028 Dec 23 08:57 stderr.txt
[2025-12-23 08:57:48] HITS file was successfully produced:
[2025-12-23 08:57:48] -rw------- 1 boinc boinc 198303410 Dec 23 08:56 shared/HITS.pool.root.1
[2025-12-23 08:57:48]  *** Contents of shared directory: ***
[2025-12-23 08:57:48] total 403212
[2025-12-23 08:57:48] -rw-r--r-- 2 boinc boinc 212816803 Dec 23 07:20 ATLAS.root_0
[2025-12-23 08:57:48] -rw-r--r-- 2 boinc boinc    592391 Dec 23 07:20 input.tar.gz
[2025-12-23 08:57:48] -rw-r--r-- 2 boinc boinc     15847 Dec 23 07:20 start_atlas.sh
[2025-12-23 08:57:48] -rw------- 1 boinc boinc 198303410 Dec 23 08:56 HITS.pool.root.1
[2025-12-23 08:57:48] -rw------- 1 boinc boinc   1146880 Dec 23 08:57 result.tar.gz
08:57:49 (1253848): run_atlas exited; CPU time 21969.180571
08:57:49 (1253848): called boinc_finish(0)

</stderr_txt>
]]>

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