Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:13:23 (3500033): wrapper (7.7.26015): starting
22:13:23 (3500033): wrapper: running run_atlas (--nthreads 9)
[2025-12-22 22:13:23] Arguments: --nthreads 9
[2025-12-22 22:13:23] Threads: 9
[2025-12-22 22:13:23] Checking for CVMFS
[2025-12-22 22:13:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-22 22:13:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-22 22:13:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-22 22:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-22 22:13:23] 2.13.2.0 7367 74159 232124 154318 0 526 37232445 40960001 24359 16776704 0 360258345 99.567 437425647 40151 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-22 22:13:23] CVMFS is ok
[2025-12-22 22:13:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-22 22:13:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-22 22:13:23] Further information can be found at the LHC@home message board.
[2025-12-22 22:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-22 22:13:23] Checking for apptainer binary...
[2025-12-22 22:13:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-22 22:13:23] Running /usr/bin/apptainer --version
[2025-12-22 22:13:23] apptainer version 1.4.5-2.el9
[2025-12-22 22:13:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-22 22:13:23] c-212-16.aglt2.org
[2025-12-22 22:13:23] apptainer works
[2025-12-22 22:13:23] Set ATHENA_PROC_NUMBER=9
[2025-12-22 22:13:23] Set ATHENA_CORE_NUMBER=9
[2025-12-22 22:13:23] Starting ATLAS job with PandaID=6929508277
[2025-12-22 22:13:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-22 23:47:51]  *** The last 200 lines of the pilot log: ***
[2025-12-22 23:47:51] ]
[2025-12-22 23:47:51] 2025-12-23 04:46:42,085 | INFO     | transferring file log.47886933._004556.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929508277/log.47886933._004556.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-22 23:47:51] 2025-12-23 04:46:42,085 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929508277/log.47886933._004556.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._004556.job
[2025-12-22 23:47:51] 2025-12-23 04:46:42,136 | INFO     | adding to output.list: log.47886933._004556.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/39/log.47886933._004556.job.log.tg
[2025-12-22 23:47:51] 2025-12-23 04:46:42,138 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-22 23:47:51] 2025-12-23 04:46:42,138 | INFO     | summary of transferred files:
[2025-12-22 23:47:51] 2025-12-23 04:46:42,138 | INFO     |  -- lfn=log.47886933._004556.job.log.tgz.1, status_code=0, status=transferred
[2025-12-22 23:47:51] 2025-12-23 04:46:42,138 | INFO     | stage-out finished correctly
[2025-12-22 23:47:51] 2025-12-23 04:46:43,450 | INFO     | time since job start (5588s) is within the limit (174528.0s)
[2025-12-22 23:47:51] 2025-12-23 04:46:43,626 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-22 23:47:51] 2025-12-23 04:46:43,799 | INFO     | job 6929508277 has state=finished
[2025-12-22 23:47:51] 2025-12-23 04:46:43,799 | INFO     | preparing for final server update for job 6929508277 in state='finished'
[2025-12-22 23:47:51] 2025-12-23 04:46:43,800 | INFO     | this job has now completed (state=finished)
[2025-12-22 23:47:51] 2025-12-23 04:46:43,800 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-22 23:47:51] 2025-12-23 04:46:43,800 | INFO     | log transfer has been attempted: DONE
[2025-12-22 23:47:51] 2025-12-23 04:46:43,800 | INFO     | job 6929508277 has finished - writing final server update
[2025-12-22 23:47:51] 2025-12-23 04:46:43,800 | INFO     | total number of processed events: 400 (read)
[2025-12-22 23:47:51] 2025-12-23 04:46:43,812 | INFO     | executing command: lscpu
[2025-12-22 23:47:51] 2025-12-23 04:46:43,929 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-22 23:47:51] 2025-12-23 04:46:44,369 | WARNING  | process 3510866 can no longer be monitored (due to stat problems) - aborting
[2025-12-22 23:47:51] 2025-12-23 04:46:44,369 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929508277/memory_monitor_summary.json (trf name=prmon)
[2025-12-22 23:47:51] 2025-12-23 04:46:45,080 | INFO     | number of running child processes to parent process 3510866: 1
[2025-12-22 23:47:51] 2025-12-23 04:46:45,081 | INFO     | maximum number of monitored processes: 6
[2025-12-22 23:47:51] 2025-12-23 04:46:45,953 | INFO     | PID=3503837 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-22 23:47:51] 2025-12-23 04:46:45,953 | INFO     | .. there are 32 such processes running
[2025-12-22 23:47:51] 2025-12-23 04:46:46,954 | INFO     | time since job start (5591s) is within the limit (174528.0s)
[2025-12-22 23:47:51] 2025-12-23 04:46:47,585 | INFO     | monitor loop #355: job 0:6929508277 is in state 'finished'
[2025-12-22 23:47:51] 2025-12-23 04:46:47,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 23:47:51] 2025-12-23 04:46:48,961 | INFO     | time since job start (5593s) is within the limit (174528.0s)
[2025-12-22 23:47:51] 2025-12-23 04:46:50,089 | INFO     | monitor loop #356: job 0:6929508277 is in state 'finished'
[2025-12-22 23:47:51] 2025-12-23 04:46:50,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 23:47:51] 2025-12-23 04:46:50,967 | INFO     | time since job start (5595s) is within the limit (174528.0s)
[2025-12-22 23:47:51] 2025-12-23 04:46:52,594 | INFO     | monitor loop #357: job 0:6929508277 is in state 'finished'
[2025-12-22 23:47:51] 2025-12-23 04:46:52,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 23:47:51] 2025-12-23 04:46:52,974 | INFO     | time since job start (5597s) is within the limit (174528.0s)
[2025-12-22 23:47:51] 2025-12-23 04:46:54,728 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-22 23:47:51] 2025-12-23 04:46:54,743 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3161.921989583334
[2025-12-22 23:47:51] 2025-12-23 04:46:54,758 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929508277/memory_monitor_summary.json (trf name=prmon)
[2025-12-22 23:47:51] 2025-12-23 04:46:54,758 | INFO     | extracted standard info from prmon json
[2025-12-22 23:47:51] 2025-12-23 04:46:54,759 | INFO     | extracted standard memory fields from prmon json
[2025-12-22 23:47:51] 2025-12-23 04:46:54,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-22 23:47:51] 2025-12-23 04:46:54,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-22 23:47:51] 2025-12-23 04:46:54,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-22 23:47:51] 2025-12-23 04:46:54,761 | INFO     | fitting pss+swap vs Time
[2025-12-22 23:47:51] 2025-12-23 04:46:54,761 | INFO     | sum of square deviations: 190439699.29411757
[2025-12-22 23:47:51] 2025-12-23 04:46:54,761 | INFO     | sum of deviations: 1272805244.9999998
[2025-12-22 23:47:51] 2025-12-23 04:46:54,761 | INFO     | mean x: 1766462508.235294
[2025-12-22 23:47:51] 2025-12-23 04:46:54,761 | INFO     | mean y: 2542897.6
[2025-12-22 23:47:51] 2025-12-23 04:46:54,762 | INFO     | intersect: -11803623326.729816
[2025-12-22 23:47:51] 2025-12-23 04:46:54,762 | INFO     | chi2: 0.00038600560838781926
[2025-12-22 23:47:51] 2025-12-23 04:46:54,762 | INFO     | current memory leak: 6.68 B/s (using 85 data points, chi2=0.00)
[2025-12-22 23:47:51] 2025-12-23 04:46:54,762 | INFO     | could have reported an average CPU frequency of 3214 MHz (7 samples)
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | ..............................
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | . Timing measurements:
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | . get job = 0 s
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | . initial setup = 2 s
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | . payload setup = 5 s
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | . stage-in = 0 s
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | . payload execution = 5561 s
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | . stage-out = 1 s
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | . log creation = 0 s
[2025-12-22 23:47:51] 2025-12-23 04:46:54,763 | INFO     | ..............................
[2025-12-22 23:47:51] 2025-12-23 04:46:54,909 | INFO     | 
[2025-12-22 23:47:51] 2025-12-23 04:46:54,909 | INFO     | job summary report
[2025-12-22 23:47:51] 2025-12-23 04:46:54,909 | INFO     | --------------------------------------------------
[2025-12-22 23:47:51] 2025-12-23 04:46:54,909 | INFO     | PanDA job id: 6929508277
[2025-12-22 23:47:51] 2025-12-23 04:46:54,909 | INFO     | task id: 47886933
[2025-12-22 23:47:51] 2025-12-23 04:46:54,909 | INFO     | errors: (none)
[2025-12-22 23:47:51] 2025-12-23 04:46:54,909 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | pilot state: finished 
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | transexitcode: 0
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | exeerrorcode: 0
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | exeerrordiag: 
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | exitcode: 0
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | exitmsg: OK
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | cpuconsumptiontime: 33772 s
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | nevents: 400
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | neventsw: 0
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | pid: 3510866
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | pgrp: 3510866
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | corecount: 9
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | event service: False
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | sizes: {0: 2283794, 1: 2283993, 5: 2284255, 11: 2284311, 5571: 2311013, 5572: 2320011, 5574: 2320195, 5585: 2320389}
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | --------------------------------------------------
[2025-12-22 23:47:51] 2025-12-23 04:46:54,910 | INFO     | 
[2025-12-22 23:47:51] 2025-12-23 04:46:54,911 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-22 23:47:51] 2025-12-23 04:46:54,944 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,949 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-22 23:47:51] 2025-12-23 04:46:54,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-22 23:47:51] 2025-12-23 04:46:54,949 | INFO     | job 6929508277 has completed (purged errors)
[2025-12-22 23:47:51] 2025-12-23 04:46:54,949 | INFO     | overall cleanup function is called
[2025-12-22 23:47:51] 2025-12-23 04:46:55,964 | INFO     | --- collectZombieJob: --- 10, [3510866]
[2025-12-22 23:47:51] 2025-12-23 04:46:55,964 | INFO     | zombie collector waiting for pid 3510866
[2025-12-22 23:47:51] 2025-12-23 04:46:55,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-22 23:47:51] 2025-12-23 04:46:55,964 | INFO     | collected zombie processes
[2025-12-22 23:47:51] 2025-12-23 04:46:55,964 | INFO     | will attempt to kill all subprocesses of pid=3510866
[2025-12-22 23:47:51] 2025-12-23 04:46:56,647 | INFO     | process IDs to be killed: [3510866] (in reverse order)
[2025-12-22 23:47:51] 2025-12-23 04:46:56,802 | WARNING  | found no corresponding commands to process id(s)
[2025-12-22 23:47:51] 2025-12-23 04:46:56,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-22 23:47:51] 2025-12-23 04:46:56,826 | INFO     | did not find any defunct processes belonging to 3510866
[2025-12-22 23:47:51] 2025-12-23 04:46:56,894 | INFO     | did not find any defunct processes belonging to 3510866
[2025-12-22 23:47:51] 2025-12-23 04:46:56,894 | INFO     | ready for new job
[2025-12-22 23:47:51] 2025-12-23 04:46:56,894 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-22 23:47:51] 2025-12-23 04:46:56,896 | INFO     | ***************************************
[2025-12-22 23:47:51] 2025-12-23 04:46:56,896 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-22 23:47:51] 2025-12-23 04:46:56,896 | INFO     | ***************************************
[2025-12-22 23:47:51] 2025-12-23 04:46:56,896 | INFO     | 
[2025-12-22 23:47:51] 2025-12-23 04:46:56,945 | INFO     | architecture information:
[2025-12-22 23:47:51] 2025-12-23 04:46:56,954 | INFO     | executing command: cat /etc/os-release
[2025-12-22 23:47:51] 2025-12-23 04:46:57,001 | INFO     | cat /etc/os-release:
[2025-12-22 23:47:51] NAME="CentOS Linux"
[2025-12-22 23:47:51] VERSION="7 (Core)"
[2025-12-22 23:47:51] ID="centos"
[2025-12-22 23:47:51] ID_LIKE="rhel fedora"
[2025-12-22 23:47:51] VERSION_ID="7"
[2025-12-22 23:47:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-22 23:47:51] ANSI_COLOR="0;31"
[2025-12-22 23:47:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-22 23:47:51] HOME_URL="https://www.centos.org/"
[2025-12-22 23:47:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-22 23:47:51] 
[2025-12-22 23:47:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-22 23:47:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-22 23:47:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-22 23:47:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-22 23:47:51] 
[2025-12-22 23:47:51] 2025-12-23 04:46:57,002 | INFO     | ***************************************
[2025-12-22 23:47:51] 2025-12-23 04:46:57,505 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-22 23:47:51] 2025-12-23 04:46:57,555 | INFO     | sufficient remaining disk space (129372258304 B)
[2025-12-22 23:47:51] 2025-12-23 04:46:57,556 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-22 23:47:51] 2025-12-23 04:46:57,556 | INFO     | current server update state: UPDATING_FINAL
[2025-12-22 23:47:51] 2025-12-23 04:46:57,556 | INFO     | update_server=False
[2025-12-22 23:47:51] 2025-12-23 04:46:57,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-22 23:47:51] 2025-12-23 04:46:57,623 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-22 23:47:51] 2025-12-23 04:46:57,623 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-22 23:47:51] 2025-12-23 04:46:57,626 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-22 23:47:51] 2025-12-23 04:46:57,626 | INFO     | will abort loop
[2025-12-22 23:47:51] 2025-12-23 04:46:57,708 | INFO     | all payload control threads have been joined
[2025-12-22 23:47:51] 2025-12-23 04:46:57,794 | INFO     | all data control threads have been joined
[2025-12-22 23:47:51] 2025-12-23 04:46:57,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-22 23:47:51] 2025-12-23 04:46:58,444 | INFO     | all job control threads have been joined
[2025-12-22 23:47:51] 2025-12-23 04:46:58,562 | INFO     | [job] retrieve thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:58,600 | INFO     | [payload] execute_payloads thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:58,632 | INFO     | [job] job monitor thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:58,714 | INFO     | [payload] control thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:58,801 | INFO     | [data] control thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:58,875 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-22 23:47:51] 2025-12-23 04:46:59,328 | INFO     | [payload] failed_post thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:59,450 | INFO     | [job] control thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:59,542 | INFO     | [job] create_data_payload thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:59,761 | INFO     | [payload] validate_pre thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:59,787 | INFO     | [payload] validate_post thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:59,824 | INFO     | [job] validate thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:59,824 | INFO     | [data] copytool_out thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:46:59,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-22 23:47:51] 2025-12-23 04:47:00,033 | INFO     | [data] copytool_in thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:47:00,935 | INFO     | [job] queue monitor thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:47:02,882 | INFO     | [data] queue_monitor thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:47:08,245 | INFO     | job.realtimelogging is not enabled
[2025-12-22 23:47:51] 2025-12-23 04:47:09,254 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-22 23:47:51] 2025-12-23 04:47:26,943 | INFO     | PID=3503837 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-22 23:47:51] 2025-12-23 04:47:26,943 | INFO     | .. there are 32 such processes running
[2025-12-22 23:47:51] 2025-12-23 04:47:26,943 | INFO     | found 0 job(s) in 20 queues
[2025-12-22 23:47:51] 2025-12-23 04:47:26,943 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-22 23:47:51] 2025-12-23 04:47:26,943 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-22 23:47:51] 2025-12-23 04:47:44,045 | INFO     | [monitor] cgroup control has ended
[2025-12-22 23:47:51] 2025-12-23 04:47:45,828 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663429482304)>', '<ExcThread(monitor, started 139662664394496)>']
[2025-12-22 23:47:51] 2025-12-23 04:47:46,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-22 23:47:51] 2025-12-23 04:47:46,053 | INFO     | [monitor] control thread has ended
[2025-12-22 23:47:51] 2025-12-23 04:47:50,854 | INFO     | all workflow threads have been joined
[2025-12-22 23:47:51] 2025-12-23 04:47:50,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-22 23:47:51] 2025-12-23 04:47:50,860 | INFO     | traces error code: 0
[2025-12-22 23:47:51] 2025-12-23 04:47:50,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-22 23:47:51] 2025-12-23 04:47:51,413 [wrapper] ==== pilot stdout END ====
[2025-12-22 23:47:51] 2025-12-23 04:47:51,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-22 23:47:51] 2025-12-23 04:47:51,418 [wrapper] pilotpid: 3503837
[2025-12-22 23:47:51] 2025-12-23 04:47:51,420 [wrapper] Pilot exit status: 0
[2025-12-22 23:47:51] 2025-12-23 04:47:51,432 [wrapper] pandaids: 6929508277
[2025-12-22 23:47:51] 2025-12-23 04:47:51,537 [wrapper] cleanup supervisor_pilot  840750 3503838
[2025-12-22 23:47:51] 2025-12-23 04:47:51,540 [wrapper] Test setup, not cleaning
[2025-12-22 23:47:51] 2025-12-23 04:47:51,543 [wrapper] apfmon messages muted
[2025-12-22 23:47:51] 2025-12-23 04:47:51,545 [wrapper] ==== wrapper stdout END ====
[2025-12-22 23:47:51] 2025-12-23 04:47:51,547 [wrapper] ==== wrapper stderr END ====
[2025-12-22 23:47:51]  *** Error codes and diagnostics ***
[2025-12-22 23:47:51]     "exeErrorCode": 0,
[2025-12-22 23:47:51]     "exeErrorDiag": "",
[2025-12-22 23:47:51]     "pilotErrorCode": 0,
[2025-12-22 23:47:51]     "pilotErrorDiag": "",
[2025-12-22 23:47:51]  *** Listing of results directory ***
[2025-12-22 23:47:51] total 335412
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas      5112 Dec 14 18:13 queuedata.json
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas    579449 Dec 14 18:13 pilot3.tar.gz
[2025-12-22 23:47:51] -rwx------. 1 boincer umatlas     36322 Dec 14 18:15 runpilot2-wrapper.sh
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas       100 Dec 22 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-22 23:47:51] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 22 22:13 run_atlas
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas       105 Dec 22 22:13 job.xml
[2025-12-22 23:47:51] -rw-r--r--. 2 boincer umatlas 190999169 Dec 22 22:13 EVNT.47886929._000218.pool.root.1
[2025-12-22 23:47:51] -rw-r--r--. 2 boincer umatlas     15847 Dec 22 22:13 start_atlas.sh
[2025-12-22 23:47:51] drwxrwx--x. 2 boincer umatlas      4096 Dec 22 22:13 shared
[2025-12-22 23:47:51] -rw-r--r--. 2 boincer umatlas    592400 Dec 22 22:13 input.tar.gz
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas         0 Dec 22 22:13 boinc_lockfile
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas      2513 Dec 22 22:13 pandaJob.out
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas        57 Dec 22 22:13 setup.sh.local
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas    987824 Dec 22 22:13 agis_schedconf.cvmfs.json
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas   1516240 Dec 22 22:13 agis_ddmendpoints.agis.ALL.json
[2025-12-22 23:47:51] drwx------. 5 boincer umatlas      4096 Dec 22 22:13 pilot3
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas      6947 Dec 22 23:40 init_data.xml
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas 146332445 Dec 22 23:46 HITS.47886933._004556.pool.root.1
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas       529 Dec 22 23:46 boinc_task_state.xml
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas        95 Dec 22 23:46 pilot_heartbeat.json
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas      1037 Dec 22 23:46 memory_monitor_summary.json
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas    349018 Dec 22 23:46 log.47886933._004556.job.log.tgz.1
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas      7771 Dec 22 23:46 heartbeat.json
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas      8192 Dec 22 23:47 boinc_mmap_file
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas        27 Dec 22 23:47 wrapper_checkpoint.txt
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas      5083 Dec 22 23:47 pilotlog.txt
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas    759522 Dec 22 23:47 log.47886933._004556.job.log.1
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas       357 Dec 22 23:47 output.list
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas       620 Dec 22 23:47 runtime_log
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas   1126400 Dec 22 23:47 result.tar.gz
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas      9342 Dec 22 23:47 runtime_log.err
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas       653 Dec 22 23:47 CmFNDm7TAp8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiYWKDmMXYJnn.diag
[2025-12-22 23:47:51] -rw-r--r--. 1 boincer umatlas     22505 Dec 22 23:47 stderr.txt
[2025-12-22 23:47:51] HITS file was successfully produced:
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas 146332445 Dec 22 23:46 shared/HITS.pool.root.1
[2025-12-22 23:47:51]  *** Contents of shared directory: ***
[2025-12-22 23:47:51] total 331128
[2025-12-22 23:47:51] -rw-r--r--. 2 boincer umatlas 190999169 Dec 22 22:13 ATLAS.root_0
[2025-12-22 23:47:51] -rw-r--r--. 2 boincer umatlas     15847 Dec 22 22:13 start_atlas.sh
[2025-12-22 23:47:51] -rw-r--r--. 2 boincer umatlas    592400 Dec 22 22:13 input.tar.gz
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas 146332445 Dec 22 23:46 HITS.pool.root.1
[2025-12-22 23:47:51] -rw-------. 1 boincer umatlas   1126400 Dec 22 23:47 result.tar.gz
23:47:52 (3500033): run_atlas exited; CPU time 33955.126079
23:47:52 (3500033): called boinc_finish(0)

</stderr_txt>
]]>

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