Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:24:49 (4060770): wrapper (7.7.26015): starting
00:24:49 (4060770): wrapper: running run_atlas (--nthreads 4)
[2025-12-22 00:24:49] Arguments: --nthreads 4
[2025-12-22 00:24:49] Threads: 4
[2025-12-22 00:24:49] Checking for CVMFS
[2025-12-22 00:24:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-22 00:24:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-22 00:24:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-22 00:24:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-22 00:24:49] 2.9.2.0 3711072 1454 85112 154278 0 56 20682719 36864000 0 130560 0 762493 99.987 54262 6033 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-22 00:24:49] CVMFS is ok
[2025-12-22 00:24:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-22 00:24:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-22 00:24:49] Further information can be found at the LHC@home message board.
[2025-12-22 00:24:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-22 00:24:49] Checking for apptainer binary...
[2025-12-22 00:24:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-22 00:24:49] Running /usr/bin/apptainer --version
[2025-12-22 00:24:49] apptainer version 1.4.1-1.1
[2025-12-22 00:24:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-22 00:24:49] thA309
[2025-12-22 00:24:49] apptainer works
[2025-12-22 00:24:49] Set ATHENA_PROC_NUMBER=4
[2025-12-22 00:24:49] Set ATHENA_CORE_NUMBER=4
[2025-12-22 00:24:49] Starting ATLAS job with PandaID=6939382518
[2025-12-22 00:24:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-22 01:38:09]  *** The last 200 lines of the pilot log: ***
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | job 6939382518 has completed (purged errors)
[2025-12-22 01:38:09] 2025-12-22 00:37:33,461 | INFO     | overall cleanup function is called
[2025-12-22 01:38:09] 2025-12-22 00:37:34,468 | INFO     | --- collectZombieJob: --- 10, [4071178]
[2025-12-22 01:38:09] 2025-12-22 00:37:34,468 | INFO     | zombie collector waiting for pid 4071178
[2025-12-22 01:38:09] 2025-12-22 00:37:34,468 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-22 01:38:09] 2025-12-22 00:37:34,468 | INFO     | collected zombie processes
[2025-12-22 01:38:09] 2025-12-22 00:37:34,469 | INFO     | will attempt to kill all subprocesses of pid=4071178
[2025-12-22 01:38:09] 2025-12-22 00:37:34,520 | INFO     | process IDs to be killed: [4071178] (in reverse order)
[2025-12-22 01:38:09] 2025-12-22 00:37:34,557 | WARNING  | found no corresponding commands to process id(s)
[2025-12-22 01:38:09] 2025-12-22 00:37:34,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-22 01:38:09] 2025-12-22 00:37:34,559 | INFO     | did not find any defunct processes belonging to 4071178
[2025-12-22 01:38:09] 2025-12-22 00:37:34,561 | INFO     | did not find any defunct processes belonging to 4071178
[2025-12-22 01:38:09] 2025-12-22 00:37:34,561 | INFO     | ready for new job
[2025-12-22 01:38:09] 2025-12-22 00:37:34,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-22 01:38:09] 2025-12-22 00:37:34,562 | INFO     | ***************************************
[2025-12-22 01:38:09] 2025-12-22 00:37:34,562 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-22 01:38:09] 2025-12-22 00:37:34,562 | INFO     | ***************************************
[2025-12-22 01:38:09] 2025-12-22 00:37:34,562 | INFO     | 
[2025-12-22 01:38:09] 2025-12-22 00:37:34,562 | INFO     | architecture information:
[2025-12-22 01:38:09] 2025-12-22 00:37:34,563 | INFO     | executing command: cat /etc/os-release
[2025-12-22 01:38:09] 2025-12-22 00:37:34,578 | INFO     | cat /etc/os-release:
[2025-12-22 01:38:09] NAME="CentOS Linux"
[2025-12-22 01:38:09] VERSION="7 (Core)"
[2025-12-22 01:38:09] ID="centos"
[2025-12-22 01:38:09] ID_LIKE="rhel fedora"
[2025-12-22 01:38:09] VERSION_ID="7"
[2025-12-22 01:38:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-22 01:38:09] ANSI_COLOR="0;31"
[2025-12-22 01:38:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-22 01:38:09] HOME_URL="https://www.centos.org/"
[2025-12-22 01:38:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-22 01:38:09] 
[2025-12-22 01:38:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-22 01:38:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-22 01:38:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-22 01:38:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-22 01:38:09] 
[2025-12-22 01:38:09] 2025-12-22 00:37:34,578 | INFO     | ***************************************
[2025-12-22 01:38:09] 2025-12-22 00:37:35,081 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-22 01:38:09] 2025-12-22 00:37:35,100 | INFO     | sufficient remaining disk space (240532848640 B)
[2025-12-22 01:38:09] 2025-12-22 00:37:35,101 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-22 01:38:09] 2025-12-22 00:37:35,101 | INFO     | current server update state: UPDATING_FINAL
[2025-12-22 01:38:09] 2025-12-22 00:37:35,101 | INFO     | update_server=False
[2025-12-22 01:38:09] 2025-12-22 00:37:35,101 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-22 01:38:09] 2025-12-22 00:37:35,101 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-22 01:38:09] 2025-12-22 00:37:35,101 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-22 01:38:09] 2025-12-22 00:37:35,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-22 01:38:09] 2025-12-22 00:37:35,102 | INFO     | found 0 job(s) in 20 queues
[2025-12-22 01:38:09] 2025-12-22 00:37:35,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-22 01:38:09] 2025-12-22 00:37:35,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-22 01:38:09] 2025-12-22 00:37:35,309 | INFO     | all data control threads have been joined
[2025-12-22 01:38:09] 2025-12-22 00:37:35,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-22 01:38:09] 2025-12-22 00:37:35,515 | INFO     | aborting loop
[2025-12-22 01:38:09] 2025-12-22 00:37:35,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-22 01:38:09] 2025-12-22 00:37:36,107 | INFO     | [job] retrieve thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:36,107 | INFO     | [job] queue monitor thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:36,162 | INFO     | all job control threads have been joined
[2025-12-22 01:38:09] 2025-12-22 00:37:36,296 | INFO     | all payload control threads have been joined
[2025-12-22 01:38:09] 2025-12-22 00:37:36,314 | INFO     | [data] control thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:36,336 | INFO     | [payload] validate_post thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:36,521 | INFO     | [job] job monitor thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:36,584 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:36,585 | INFO     | [job] validate thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:36,749 | INFO     | [job] create_data_payload thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:36,806 | INFO     | [payload] validate_pre thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:37,107 | INFO     | [data] copytool_out thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:37,161 | INFO     | [payload] execute_payloads thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:37,168 | INFO     | [job] control thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:37,301 | INFO     | [payload] control thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:37,360 | INFO     | [data] copytool_in thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:37,406 | INFO     | [payload] failed_post thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:37:39,747 | INFO     | [data] queue_monitor thread has finished
[2025-12-22 01:38:09] 2025-12-22 00:38:02,808 | INFO     | [monitor] cgroup control has ended
[2025-12-22 01:38:09] 2025-12-22 00:38:03,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140686219409216)>', '<ExcThread(monitor, started 140685059544832)>']
[2025-12-22 01:38:09] 2025-12-22 00:38:04,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-22 01:38:09] 2025-12-22 00:38:04,255 | INFO     | [monitor] control thread has ended
[2025-12-22 01:38:09] 2025-12-22 00:38:08,955 | INFO     | all workflow threads have been joined
[2025-12-22 01:38:09] 2025-12-22 00:38:08,955 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-22 01:38:09] 2025-12-22 00:38:08,956 | INFO     | traces error code: 0
[2025-12-22 01:38:09] 2025-12-22 00:38:08,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-22 01:38:09] 2025-12-22 00:38:09,036 [wrapper] ==== pilot stdout END ====
[2025-12-22 01:38:09] 2025-12-22 00:38:09,040 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-22 01:38:09] 2025-12-22 00:38:09,045 [wrapper] pilotpid: 4064589
[2025-12-22 01:38:09] 2025-12-22 00:38:09,049 [wrapper] Pilot exit status: 0
[2025-12-22 01:38:09] 2025-12-22 00:38:09,061 [wrapper] pandaids: 6939382518
[2025-12-22 01:38:09] 2025-12-22 00:38:09,086 [wrapper] cleanup supervisor_pilot 4083126 4064590
[2025-12-22 01:38:09] 2025-12-22 00:38:09,090 [wrapper] Test setup, not cleaning
[2025-12-22 01:38:09] 2025-12-22 00:38:09,094 [wrapper] apfmon messages muted
[2025-12-22 01:38:09] 2025-12-22 00:38:09,098 [wrapper] ==== wrapper stdout END ====
[2025-12-22 01:38:09] 2025-12-22 00:38:09,102 [wrapper] ==== wrapper stderr END ====
[2025-12-22 01:38:09]  *** Error codes and diagnostics ***
[2025-12-22 01:38:09]     "exeErrorCode": 0,
[2025-12-22 01:38:09]     "exeErrorDiag": "",
[2025-12-22 01:38:09]     "pilotErrorCode": 0,
[2025-12-22 01:38:09]     "pilotErrorDiag": "",
[2025-12-22 01:38:09]  *** Listing of results directory ***
[2025-12-22 01:38:09] total 432348
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc    579449 Dec 20 21:18 pilot3.tar.gz
[2025-12-22 01:38:09] -rwx------ 1 boinc boinc     36322 Dec 20 21:49 runpilot2-wrapper.sh
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc      5112 Dec 20 21:49 queuedata.json
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc       100 Dec 22 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-22 01:38:09] -rwxr-xr-x 1 boinc boinc      7986 Dec 22 00:24 run_atlas
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc       105 Dec 22 00:24 job.xml
[2025-12-22 01:38:09] -rw-r--r-- 2 boinc boinc 251867062 Dec 22 00:24 EVNT.47929390._000106.pool.root.1
[2025-12-22 01:38:09] -rw-r--r-- 2 boinc boinc    592398 Dec 22 00:24 input.tar.gz
[2025-12-22 01:38:09] -rw-r--r-- 2 boinc boinc     15847 Dec 22 00:24 start_atlas.sh
[2025-12-22 01:38:09] drwxrwx--x 2 boinc boinc      4096 Dec 22 00:24 shared
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc         0 Dec 22 00:24 boinc_setup_complete
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc      6377 Dec 22 00:24 init_data.xml
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc         0 Dec 22 00:24 boinc_lockfile
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc      2550 Dec 22 00:24 pandaJob.out
[2025-12-22 01:38:09] -rw------- 1 boinc boinc    988254 Dec 22 00:24 agis_schedconf.cvmfs.json
[2025-12-22 01:38:09] -rw------- 1 boinc boinc   1516240 Dec 22 00:24 agis_ddmendpoints.agis.ALL.json
[2025-12-22 01:38:09] drwx------ 5 boinc boinc      4096 Dec 22 00:24 pilot3
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc       530 Dec 22 01:37 boinc_task_state.xml
[2025-12-22 01:38:09] -rw------- 1 boinc boinc 185127577 Dec 22 01:37 HITS.47929392._004907.pool.root.1
[2025-12-22 01:38:09] -rw------- 1 boinc boinc        95 Dec 22 01:37 pilot_heartbeat.json
[2025-12-22 01:38:09] -rw------- 1 boinc boinc      1019 Dec 22 01:37 memory_monitor_summary.json
[2025-12-22 01:38:09] -rw------- 1 boinc boinc    270054 Dec 22 01:37 log.47929392._004907.job.log.tgz.1
[2025-12-22 01:38:09] -rw------- 1 boinc boinc      7759 Dec 22 01:37 heartbeat.json
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc        27 Dec 22 01:38 wrapper_checkpoint.txt
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc      8192 Dec 22 01:38 boinc_mmap_file
[2025-12-22 01:38:09] -rw------- 1 boinc boinc      4556 Dec 22 01:38 pilotlog.txt
[2025-12-22 01:38:09] -rw------- 1 boinc boinc    645829 Dec 22 01:38 log.47929392._004907.job.log.1
[2025-12-22 01:38:09] -rw------- 1 boinc boinc       357 Dec 22 01:38 output.list
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc       620 Dec 22 01:38 runtime_log
[2025-12-22 01:38:09] -rw------- 1 boinc boinc    931840 Dec 22 01:38 result.tar.gz
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc      8897 Dec 22 01:38 runtime_log.err
[2025-12-22 01:38:09] -rw------- 1 boinc boinc       658 Dec 22 01:38 4jyKDmZ4Ir8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCghKDmn3a3vm.diag
[2025-12-22 01:38:09] -rw-r--r-- 1 boinc boinc     12061 Dec 22 01:38 stderr.txt
[2025-12-22 01:38:09] HITS file was successfully produced:
[2025-12-22 01:38:09] -rw------- 1 boinc boinc 185127577 Dec 22 01:37 shared/HITS.pool.root.1
[2025-12-22 01:38:09]  *** Contents of shared directory: ***
[2025-12-22 01:38:09] total 428272
[2025-12-22 01:38:09] -rw-r--r-- 2 boinc boinc 251867062 Dec 22 00:24 ATLAS.root_0
[2025-12-22 01:38:09] -rw-r--r-- 2 boinc boinc    592398 Dec 22 00:24 input.tar.gz
[2025-12-22 01:38:09] -rw-r--r-- 2 boinc boinc     15847 Dec 22 00:24 start_atlas.sh
[2025-12-22 01:38:09] -rw------- 1 boinc boinc 185127577 Dec 22 01:37 HITS.pool.root.1
[2025-12-22 01:38:09] -rw------- 1 boinc boinc    931840 Dec 22 01:38 result.tar.gz
01:38:10 (4060770): run_atlas exited; CPU time 16347.601034
01:38:10 (4060770): called boinc_finish(0)

</stderr_txt>
]]>

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