Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:22:41 (3800687): wrapper (7.7.26015): starting
04:22:41 (3800687): wrapper: running run_atlas (--nthreads 12)
[2025-12-22 04:22:41] Arguments: --nthreads 12
[2025-12-22 04:22:41] Threads: 12
[2025-12-22 04:22:41] Checking for CVMFS
[2025-12-22 04:22:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-22 04:22:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-22 04:22:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-22 04:22:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-22 04:22:44] 2.13.3.0 55115 13797 231688 154283 1 226 28419612 46080001 32520 130560 0 107165566 99.880 32006772 22209 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-12-22 04:22:44] CVMFS is ok
[2025-12-22 04:22:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-22 04:22:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-22 04:22:44] Further information can be found at the LHC@home message board.
[2025-12-22 04:22:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-22 04:22:44] Checking for apptainer binary...
[2025-12-22 04:22:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-22 04:22:44] Running /usr/bin/apptainer --version
[2025-12-22 04:22:44] apptainer version 1.4.4-1.el9
[2025-12-22 04:22:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-22 04:22:45] mff2104.farm.particle.cz
[2025-12-22 04:22:45] apptainer works
[2025-12-22 04:22:45] Set ATHENA_PROC_NUMBER=12
[2025-12-22 04:22:45] Set ATHENA_CORE_NUMBER=12
[2025-12-22 04:22:45] Starting ATLAS job with PandaID=6939196636
[2025-12-22 04:22:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-22 06:25:57]  *** The last 200 lines of the pilot log: ***
[2025-12-22 06:25:57] 2025-12-22 05:23:32,426 | INFO     | monitor loop #486: job 0:6939196636 is in state 'finished'
[2025-12-22 06:25:57] 2025-12-22 05:23:32,426 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 06:25:57] 2025-12-22 05:23:33,279 | INFO     | time since job start (7150s) is within the limit (174528.0s)
[2025-12-22 06:25:57] 2025-12-22 05:23:34,933 | INFO     | monitor loop #487: job 0:6939196636 is in state 'finished'
[2025-12-22 06:25:57] 2025-12-22 05:23:34,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 06:25:57] 2025-12-22 05:23:35,285 | INFO     | time since job start (7152s) is within the limit (174528.0s)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,110 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-22 06:25:57] 2025-12-22 05:23:36,137 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2835.761385416666
[2025-12-22 06:25:57] 2025-12-22 05:23:36,171 | INFO     | using path: /scratch/.boinc/slots/6/PanDA_Pilot-6939196636/memory_monitor_summary.json (trf name=prmon)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,172 | INFO     | extracted standard info from prmon json
[2025-12-22 06:25:57] 2025-12-22 05:23:36,172 | INFO     | extracted standard memory fields from prmon json
[2025-12-22 06:25:57] 2025-12-22 05:23:36,172 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-22 06:25:57] 2025-12-22 05:23:36,172 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-22 06:25:57] 2025-12-22 05:23:36,172 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-22 06:25:57] 2025-12-22 05:23:36,174 | INFO     | fitting pss+swap vs Time
[2025-12-22 06:25:57] 2025-12-22 05:23:36,179 | INFO     | sum of square deviations: 459387680.2807023
[2025-12-22 06:25:57] 2025-12-22 05:23:36,179 | INFO     | sum of deviations: 24029783154.333336
[2025-12-22 06:25:57] 2025-12-22 05:23:36,179 | INFO     | mean x: 1766377500.5438597
[2025-12-22 06:25:57] 2025-12-22 05:23:36,180 | INFO     | mean y: 2660702.3333333335
[2025-12-22 06:25:57] 2025-12-22 05:23:36,180 | INFO     | intersect: -92393522584.13715
[2025-12-22 06:25:57] 2025-12-22 05:23:36,180 | INFO     | chi2: 4.598522091887934
[2025-12-22 06:25:57] 2025-12-22 05:23:36,180 | INFO     | sum of square deviations: 401548851.85321116
[2025-12-22 06:25:57] 2025-12-22 05:23:36,181 | INFO     | sum of deviations: 30841542434.027527
[2025-12-22 06:25:57] 2025-12-22 05:23:36,181 | INFO     | mean x: 1766377348.0366971
[2025-12-22 06:25:57] 2025-12-22 05:23:36,181 | INFO     | mean y: 2677918.743119266
[2025-12-22 06:25:57] 2025-12-22 05:23:36,181 | INFO     | intersect: -135666498278.76105
[2025-12-22 06:25:57] 2025-12-22 05:23:36,181 | INFO     | chi2: 3.936841046102449
[2025-12-22 06:25:57] 2025-12-22 05:23:36,181 | INFO     | current chi2=3.936841046102449 (change=14.388993519303291 %)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,181 | INFO     | right removable region: 108
[2025-12-22 06:25:57] 2025-12-22 05:23:36,182 | INFO     | sum of square deviations: 401552512.7706426
[2025-12-22 06:25:57] 2025-12-22 05:23:36,182 | INFO     | sum of deviations: -12290312982.541285
[2025-12-22 06:25:57] 2025-12-22 05:23:36,182 | INFO     | mean x: 1766377653.0458715
[2025-12-22 06:25:57] 2025-12-22 05:23:36,182 | INFO     | mean y: 2756021.908256881
[2025-12-22 06:25:57] 2025-12-22 05:23:36,182 | INFO     | intersect: 54066255840.42476
[2025-12-22 06:25:57] 2025-12-22 05:23:36,183 | INFO     | chi2: 1.0022259447697686
[2025-12-22 06:25:57] 2025-12-22 05:23:36,183 | INFO     | current chi2=1.0022259447697686 (change=78.20547722195889 %)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,183 | INFO     | sum of square deviations: 348787207.75961506
[2025-12-22 06:25:57] 2025-12-22 05:23:36,183 | INFO     | sum of deviations: -18857289812.067307
[2025-12-22 06:25:57] 2025-12-22 05:23:36,183 | INFO     | mean x: 1766377805.5480769
[2025-12-22 06:25:57] 2025-12-22 05:23:36,184 | INFO     | mean y: 2774606.9134615385
[2025-12-22 06:25:57] 2025-12-22 05:23:36,186 | INFO     | intersect: 95502544827.21426
[2025-12-22 06:25:57] 2025-12-22 05:23:36,186 | INFO     | chi2: 0.7857853601712115
[2025-12-22 06:25:57] 2025-12-22 05:23:36,186 | INFO     | current chi2=0.7857853601712115 (change=21.595986985577174 %)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,186 | INFO     | left removable region: 20
[2025-12-22 06:25:57] 2025-12-22 05:23:36,186 | INFO     | sum of square deviations: 211296927.81818137
[2025-12-22 06:25:57] 2025-12-22 05:23:36,187 | INFO     | sum of deviations: -7781712121.18182
[2025-12-22 06:25:57] 2025-12-22 05:23:36,187 | INFO     | mean x: 1766377927.5454545
[2025-12-22 06:25:57] 2025-12-22 05:23:36,187 | INFO     | mean y: 2788602.6704545454
[2025-12-22 06:25:57] 2025-12-22 05:23:36,187 | INFO     | intersect: 65055530596.138
[2025-12-22 06:25:57] 2025-12-22 05:23:36,187 | INFO     | chi2: 0.04053745315495416
[2025-12-22 06:25:57] 2025-12-22 05:23:36,187 | INFO     | current memory leak: -36.83 B/s (using 88 data points, chi2=0.04)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | could have reported an average CPU frequency of 2812 MHz (7 samples)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | ..............................
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | . Timing measurements:
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | . get job = 0 s
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | . initial setup = 5 s
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | . payload setup = 56 s
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | . stage-in = 0 s
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | . payload execution = 6954 s
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | . stage-out = 1 s
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | . log creation = 0 s
[2025-12-22 06:25:57] 2025-12-22 05:23:36,188 | INFO     | ..............................
[2025-12-22 06:25:57] 2025-12-22 05:23:36,404 | INFO     | 
[2025-12-22 06:25:57] 2025-12-22 05:23:36,404 | INFO     | job summary report
[2025-12-22 06:25:57] 2025-12-22 05:23:36,404 | INFO     | --------------------------------------------------
[2025-12-22 06:25:57] 2025-12-22 05:23:36,404 | INFO     | PanDA job id: 6939196636
[2025-12-22 06:25:57] 2025-12-22 05:23:36,404 | INFO     | task id: 47929392
[2025-12-22 06:25:57] 2025-12-22 05:23:36,404 | INFO     | errors: (none)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,404 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | pilot state: finished 
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | transexitcode: 0
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | exeerrorcode: 0
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | exeerrordiag: 
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | exitcode: 0
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | exitmsg: OK
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | cpuconsumptiontime: 38929 s
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | nevents: 400
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | neventsw: 0
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | pid: 3828933
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | pgrp: 3828933
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | corecount: 12
[2025-12-22 06:25:57] 2025-12-22 05:23:36,405 | INFO     | event service: False
[2025-12-22 06:25:57] 2025-12-22 05:23:36,406 | INFO     | sizes: {0: 2283748, 1: 2283947, 12: 2283947, 22: 2283975, 33: 2284003, 39: 2284321, 44: 2284477, 7015: 2311706, 7018: 2320706, 7019: 2320762, 7065: 2320956}
[2025-12-22 06:25:57] 2025-12-22 05:23:36,406 | INFO     | --------------------------------------------------
[2025-12-22 06:25:57] 2025-12-22 05:23:36,406 | INFO     | 
[2025-12-22 06:25:57] 2025-12-22 05:23:36,406 | INFO     | executing command: ls -lF /scratch/.boinc/slots/6
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,591 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,592 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,593 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-22 06:25:57] 2025-12-22 05:23:36,593 | INFO     | job 6939196636 has completed (purged errors)
[2025-12-22 06:25:57] 2025-12-22 05:23:36,593 | INFO     | overall cleanup function is called
[2025-12-22 06:25:57] 2025-12-22 05:23:37,614 | INFO     | --- collectZombieJob: --- 10, [3828933]
[2025-12-22 06:25:57] 2025-12-22 05:23:37,614 | INFO     | zombie collector waiting for pid 3828933
[2025-12-22 06:25:57] 2025-12-22 05:23:37,614 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-22 06:25:57] 2025-12-22 05:23:37,614 | INFO     | collected zombie processes
[2025-12-22 06:25:57] 2025-12-22 05:23:37,614 | INFO     | will attempt to kill all subprocesses of pid=3828933
[2025-12-22 06:25:57] 2025-12-22 05:23:37,942 | INFO     | PID=3809653 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-22 06:25:57] 2025-12-22 05:23:37,942 | INFO     | .. there are 79 such processes running
[2025-12-22 06:25:57] 2025-12-22 05:23:38,851 | INFO     | process IDs to be killed: [3828933] (in reverse order)
[2025-12-22 06:25:57] 2025-12-22 05:23:39,372 | WARNING  | found no corresponding commands to process id(s)
[2025-12-22 06:25:57] 2025-12-22 05:23:39,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-22 06:25:57] 2025-12-22 05:23:39,406 | INFO     | did not find any defunct processes belonging to 3828933
[2025-12-22 06:25:57] 2025-12-22 05:23:39,467 | INFO     | did not find any defunct processes belonging to 3828933
[2025-12-22 06:25:57] 2025-12-22 05:23:39,468 | INFO     | ready for new job
[2025-12-22 06:25:57] 2025-12-22 05:23:39,468 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-22 06:25:57] 2025-12-22 05:23:39,474 | INFO     | ***************************************
[2025-12-22 06:25:57] 2025-12-22 05:23:39,474 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-22 06:25:57] 2025-12-22 05:23:39,474 | INFO     | ***************************************
[2025-12-22 06:25:57] 2025-12-22 05:23:39,474 | INFO     | 
[2025-12-22 06:25:57] 2025-12-22 05:23:39,484 | INFO     | architecture information:
[2025-12-22 06:25:57] 2025-12-22 05:23:39,493 | INFO     | executing command: cat /etc/os-release
[2025-12-22 06:25:57] 2025-12-22 05:23:39,606 | INFO     | cat /etc/os-release:
[2025-12-22 06:25:57] NAME="CentOS Linux"
[2025-12-22 06:25:57] VERSION="7 (Core)"
[2025-12-22 06:25:57] ID="centos"
[2025-12-22 06:25:57] ID_LIKE="rhel fedora"
[2025-12-22 06:25:57] VERSION_ID="7"
[2025-12-22 06:25:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-22 06:25:57] ANSI_COLOR="0;31"
[2025-12-22 06:25:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-22 06:25:57] HOME_URL="https://www.centos.org/"
[2025-12-22 06:25:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-22 06:25:57] 
[2025-12-22 06:25:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-22 06:25:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-22 06:25:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-22 06:25:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-22 06:25:57] 
[2025-12-22 06:25:57] 2025-12-22 05:23:39,607 | INFO     | ***************************************
[2025-12-22 06:25:57] 2025-12-22 05:23:40,110 | INFO     | executing command: df -mP /scratch/.boinc/slots/6
[2025-12-22 06:25:57] 2025-12-22 05:23:40,253 | INFO     | sufficient remaining disk space (1650527830016 B)
[2025-12-22 06:25:57] 2025-12-22 05:23:40,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-22 06:25:57] 2025-12-22 05:23:40,254 | INFO     | current server update state: UPDATING_FINAL
[2025-12-22 06:25:57] 2025-12-22 05:23:40,254 | INFO     | update_server=False
[2025-12-22 06:25:57] 2025-12-22 05:23:40,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-22 06:25:57] 2025-12-22 05:23:40,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-22 06:25:57] 2025-12-22 05:23:40,493 | INFO     | all job control threads have been joined
[2025-12-22 06:25:57] 2025-12-22 05:23:40,552 | INFO     | all data control threads have been joined
[2025-12-22 06:25:57] 2025-12-22 05:23:40,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-22 06:25:57] 2025-12-22 05:23:40,973 | INFO     | aborting loop
[2025-12-22 06:25:57] 2025-12-22 05:23:41,113 | INFO     | all payload control threads have been joined
[2025-12-22 06:25:57] 2025-12-22 05:23:41,260 | INFO     | [job] retrieve thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:41,263 | INFO     | [payload] validate_post thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:41,347 | INFO     | [payload] validate_pre thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:41,418 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-22 06:25:57] 2025-12-22 05:23:41,460 | INFO     | [payload] failed_post thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:41,499 | INFO     | [job] control thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:41,558 | INFO     | [data] control thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:41,783 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:41,979 | INFO     | [job] job monitor thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:42,079 | INFO     | [payload] execute_payloads thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:42,119 | INFO     | [payload] control thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:42,142 | INFO     | [job] validate thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:42,303 | INFO     | [job] create_data_payload thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:42,349 | INFO     | [data] copytool_out thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:42,424 | INFO     | [job] queue monitor thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:42,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-22 06:25:57] 2025-12-22 05:23:42,518 | INFO     | [data] copytool_in thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:23:46,437 | INFO     | [data] queue_monitor thread has finished
[2025-12-22 06:25:57] 2025-12-22 05:24:11,047 | INFO     | PID=3809653 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-22 06:25:57] 2025-12-22 05:24:11,047 | INFO     | .. there are 79 such processes running
[2025-12-22 06:25:57] 2025-12-22 05:24:11,047 | INFO     | found 0 job(s) in 20 queues
[2025-12-22 06:25:57] 2025-12-22 05:24:11,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-22 06:25:57] 2025-12-22 05:24:11,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-22 06:25:57] 2025-12-22 05:24:14,636 [wrapper] supervise_pilot (15 min periods counter: 9)
[2025-12-22 06:25:57] 2025-12-22 05:24:34,721 | INFO     | [monitor] cgroup control has ended
[2025-12-22 06:25:57] 2025-12-22 05:24:35,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140376117081920)>', '<ExcThread(monitor, started 140375746397952)>']
[2025-12-22 06:25:57] 2025-12-22 05:24:36,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-22 06:25:57] 2025-12-22 05:24:36,211 | INFO     | [monitor] control thread has ended
[2025-12-22 06:25:57] 2025-12-22 05:24:40,473 | INFO     | all workflow threads have been joined
[2025-12-22 06:25:57] 2025-12-22 05:24:40,473 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-22 06:25:57] 2025-12-22 05:24:40,473 | INFO     | traces error code: 0
[2025-12-22 06:25:57] 2025-12-22 05:24:40,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-22 06:25:57] 2025-12-22 05:24:40,658 [wrapper] ==== pilot stdout END ====
[2025-12-22 06:25:57] 2025-12-22 05:24:40,703 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-22 06:25:57] 2025-12-22 05:24:40,723 [wrapper] pilotpid: 3809653
[2025-12-22 06:25:57] 2025-12-22 05:24:40,740 [wrapper] Pilot exit status: 0
[2025-12-22 06:25:57] 2025-12-22 05:24:40,827 [wrapper] pandaids: 6939196636
[2025-12-22 06:25:57] 2025-12-22 05:24:41,208 [wrapper] cleanup supervisor_pilot   73804 3809654
[2025-12-22 06:25:57] 2025-12-22 05:24:41,231 [wrapper] Test setup, not cleaning
[2025-12-22 06:25:57] 2025-12-22 05:24:41,243 [wrapper] apfmon messages muted
[2025-12-22 06:25:57] 2025-12-22 05:24:41,251 [wrapper] ==== wrapper stdout END ====
[2025-12-22 06:25:57] 2025-12-22 05:24:41,284 [wrapper] ==== wrapper stderr END ====
[2025-12-22 06:25:57]  *** Error codes and diagnostics ***
[2025-12-22 06:25:57]     "exeErrorCode": 0,
[2025-12-22 06:25:57]     "exeErrorDiag": "",
[2025-12-22 06:25:57]     "pilotErrorCode": 0,
[2025-12-22 06:25:57]     "pilotErrorDiag": "",
[2025-12-22 06:25:57]  *** Listing of results directory ***
[2025-12-22 06:25:57] total 433404
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc    579449 Dec 20 19:02 pilot3.tar.gz
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc      5112 Dec 20 19:12 queuedata.json
[2025-12-22 06:25:57] -rwx------ 1 boinc boinc     36322 Dec 20 19:15 runpilot2-wrapper.sh
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc       100 Dec 22 04:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-22 06:25:57] -rwxr-xr-x 1 boinc boinc      7986 Dec 22 04:22 run_atlas
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc       105 Dec 22 04:22 job.xml
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc      6675 Dec 22 04:22 init_data.xml
[2025-12-22 06:25:57] -rw-r--r-- 2 boinc boinc 251342715 Dec 22 04:22 EVNT.47929390._000149.pool.root.1
[2025-12-22 06:25:57] -rw-r--r-- 2 boinc boinc     15847 Dec 22 04:22 start_atlas.sh
[2025-12-22 06:25:57] drwxrwx--x 2 boinc boinc      4096 Dec 22 04:22 shared
[2025-12-22 06:25:57] -rw-r--r-- 2 boinc boinc    592399 Dec 22 04:22 input.tar.gz
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc         0 Dec 22 04:22 boinc_lockfile
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc      2550 Dec 22 04:22 pandaJob.out
[2025-12-22 06:25:57] -rw------- 1 boinc boinc    988254 Dec 22 04:24 agis_schedconf.cvmfs.json
[2025-12-22 06:25:57] -rw------- 1 boinc boinc   1516240 Dec 22 04:24 agis_ddmendpoints.agis.ALL.json
[2025-12-22 06:25:57] drwx------ 5 boinc boinc      4096 Dec 22 04:24 pilot3
[2025-12-22 06:25:57] -rw------- 1 boinc boinc 185841602 Dec 22 06:21 HITS.47929392._004881.pool.root.1
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc       529 Dec 22 06:21 boinc_task_state.xml
[2025-12-22 06:25:57] -rw------- 1 boinc boinc      1022 Dec 22 06:22 memory_monitor_summary.json
[2025-12-22 06:25:57] -rw------- 1 boinc boinc    411642 Dec 22 06:22 log.47929392._004881.job.log.tgz.1
[2025-12-22 06:25:57] -rw------- 1 boinc boinc        95 Dec 22 06:23 pilot_heartbeat.json
[2025-12-22 06:25:57] -rw------- 1 boinc boinc      7775 Dec 22 06:23 heartbeat.json
[2025-12-22 06:25:57] -rw------- 1 boinc boinc      4827 Dec 22 06:24 pilotlog.txt
[2025-12-22 06:25:57] -rw------- 1 boinc boinc    943235 Dec 22 06:24 log.47929392._004881.job.log.1
[2025-12-22 06:25:57] -rw------- 1 boinc boinc       357 Dec 22 06:24 output.list
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc       620 Dec 22 06:24 runtime_log
[2025-12-22 06:25:57] -rw------- 1 boinc boinc   1372160 Dec 22 06:24 result.tar.gz
[2025-12-22 06:25:57] -rw------- 1 boinc boinc       664 Dec 22 06:24 WOWLDm4eGr8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8ehKDmA4D2Zn.diag
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc      8880 Dec 22 06:24 runtime_log.err
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc        26 Dec 22 06:25 wrapper_checkpoint.txt
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc      8192 Dec 22 06:25 boinc_mmap_file
[2025-12-22 06:25:57] -rw-r--r-- 1 boinc boinc     21511 Dec 22 06:25 stderr.txt
[2025-12-22 06:25:57] HITS file was successfully produced:
[2025-12-22 06:25:57] -rw------- 1 boinc boinc 185841602 Dec 22 06:21 shared/HITS.pool.root.1
[2025-12-22 06:25:57]  *** Contents of shared directory: ***
[2025-12-22 06:25:57] total 428884
[2025-12-22 06:25:57] -rw-r--r-- 2 boinc boinc 251342715 Dec 22 04:22 ATLAS.root_0
[2025-12-22 06:25:57] -rw-r--r-- 2 boinc boinc     15847 Dec 22 04:22 start_atlas.sh
[2025-12-22 06:25:57] -rw-r--r-- 2 boinc boinc    592399 Dec 22 04:22 input.tar.gz
[2025-12-22 06:25:57] -rw------- 1 boinc boinc 185841602 Dec 22 06:21 HITS.pool.root.1
[2025-12-22 06:25:57] -rw------- 1 boinc boinc   1372160 Dec 22 06:24 result.tar.gz
06:25:59 (3800687): run_atlas exited; CPU time 39299.629717
06:25:59 (3800687): called boinc_finish(0)

</stderr_txt>
]]>

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