Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:33:03 (534152): wrapper (7.7.26015): starting
16:33:03 (534152): wrapper: running run_atlas (--nthreads 12)
[2025-12-21 16:33:03] Arguments: --nthreads 12
[2025-12-21 16:33:03] Threads: 12
[2025-12-21 16:33:03] Checking for CVMFS
[2025-12-21 16:33:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-21 16:33:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-21 16:33:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-21 16:33:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-21 16:33:05] 2.13.3.0 525390 12138 262464 154266 1 524 40412391 46080000 32894 130560 0 97453246 99.814 47229742 24984 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-12-21 16:33:05] CVMFS is ok
[2025-12-21 16:33:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-21 16:33:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-21 16:33:05] Further information can be found at the LHC@home message board.
[2025-12-21 16:33:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-21 16:33:05] Checking for apptainer binary...
[2025-12-21 16:33:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-21 16:33:05] Running /usr/bin/apptainer --version
[2025-12-21 16:33:05] apptainer version 1.4.4-1.el9
[2025-12-21 16:33:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-21 16:33:06] mff2102.farm.particle.cz
[2025-12-21 16:33:06] apptainer works
[2025-12-21 16:33:06] Set ATHENA_PROC_NUMBER=12
[2025-12-21 16:33:06] Set ATHENA_CORE_NUMBER=12
[2025-12-21 16:33:06] Starting ATLAS job with PandaID=6935897008
[2025-12-21 16:33:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-21 18:06:53]  *** The last 200 lines of the pilot log: ***
[2025-12-21 18:06:53] 2025-12-21 17:02:27,228 | INFO     | time since job start (5280s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:29,238 | INFO     | time since job start (5282s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:29,592 | INFO     | monitor loop #368: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:29,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:31,249 | INFO     | time since job start (5284s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:32,101 | INFO     | monitor loop #369: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:32,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:33,256 | INFO     | time since job start (5286s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:34,609 | INFO     | monitor loop #370: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:34,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:35,263 | INFO     | time since job start (5288s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:37,124 | INFO     | monitor loop #371: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:37,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:37,766 | INFO     | PID=539874 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-21 18:06:53] 2025-12-21 17:02:37,766 | INFO     | .. there are 64 such processes running
[2025-12-21 18:06:53] 2025-12-21 17:02:38,767 | INFO     | time since job start (5291s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:39,632 | INFO     | monitor loop #372: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:39,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:40,774 | INFO     | time since job start (5293s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:42,138 | INFO     | monitor loop #373: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:42,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:42,787 | INFO     | time since job start (5295s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:44,642 | INFO     | monitor loop #374: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:44,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:44,794 | INFO     | time since job start (5297s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:46,801 | INFO     | time since job start (5299s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:47,150 | INFO     | monitor loop #375: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:47,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:48,811 | INFO     | time since job start (5301s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:49,655 | INFO     | monitor loop #376: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:49,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:50,818 | INFO     | time since job start (5303s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:52,160 | INFO     | monitor loop #377: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:52,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:52,827 | INFO     | time since job start (5305s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:54,670 | INFO     | monitor loop #378: job 0:6935897008 is in state 'finished'
[2025-12-21 18:06:53] 2025-12-21 17:02:54,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 18:06:53] 2025-12-21 17:02:54,835 | INFO     | time since job start (5307s) is within the limit (174528.0s)
[2025-12-21 18:06:53] 2025-12-21 17:02:55,478 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-21 18:06:53] 2025-12-21 17:02:55,507 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2741.7520000000004
[2025-12-21 18:06:53] 2025-12-21 17:02:55,528 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6935897008/memory_monitor_summary.json (trf name=prmon)
[2025-12-21 18:06:53] 2025-12-21 17:02:55,529 | INFO     | extracted standard info from prmon json
[2025-12-21 18:06:53] 2025-12-21 17:02:55,529 | INFO     | extracted standard memory fields from prmon json
[2025-12-21 18:06:53] 2025-12-21 17:02:55,529 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-21 18:06:53] 2025-12-21 17:02:55,529 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-21 18:06:53] 2025-12-21 17:02:55,529 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-21 18:06:53] 2025-12-21 17:02:55,532 | INFO     | fitting pss+swap vs Time
[2025-12-21 18:06:53] 2025-12-21 17:02:55,532 | INFO     | sum of square deviations: 141544163.1688308
[2025-12-21 18:06:53] 2025-12-21 17:02:55,532 | INFO     | sum of deviations: -6349356271.181818
[2025-12-21 18:06:53] 2025-12-21 17:02:55,532 | INFO     | mean x: 1766334034.1038961
[2025-12-21 18:06:53] 2025-12-21 17:02:55,533 | INFO     | mean y: 2800163.272727273
[2025-12-21 18:06:53] 2025-12-21 17:02:55,533 | INFO     | intersect: 79236615428.84706
[2025-12-21 18:06:53] 2025-12-21 17:02:55,533 | INFO     | chi2: 0.07002695798062973
[2025-12-21 18:06:53] 2025-12-21 17:02:55,533 | INFO     | current memory leak: -44.86 B/s (using 77 data points, chi2=0.07)
[2025-12-21 18:06:53] 2025-12-21 17:02:55,533 | INFO     | could have reported an average CPU frequency of 2756 MHz (6 samples)
[2025-12-21 18:06:53] 2025-12-21 17:02:55,533 | INFO     | ..............................
[2025-12-21 18:06:53] 2025-12-21 17:02:55,534 | INFO     | . Timing measurements:
[2025-12-21 18:06:53] 2025-12-21 17:02:55,534 | INFO     | . get job = 0 s
[2025-12-21 18:06:53] 2025-12-21 17:02:55,534 | INFO     | . initial setup = 4 s
[2025-12-21 18:06:53] 2025-12-21 17:02:55,535 | INFO     | . payload setup = 44 s
[2025-12-21 18:06:53] 2025-12-21 17:02:55,535 | INFO     | . stage-in = 0 s
[2025-12-21 18:06:53] 2025-12-21 17:02:55,535 | INFO     | . payload execution = 5141 s
[2025-12-21 18:06:53] 2025-12-21 17:02:55,535 | INFO     | . stage-out = 1 s
[2025-12-21 18:06:53] 2025-12-21 17:02:55,535 | INFO     | . log creation = 0 s
[2025-12-21 18:06:53] 2025-12-21 17:02:55,535 | INFO     | ..............................
[2025-12-21 18:06:53] 2025-12-21 17:02:55,685 | INFO     | 
[2025-12-21 18:06:53] 2025-12-21 17:02:55,685 | INFO     | job summary report
[2025-12-21 18:06:53] 2025-12-21 17:02:55,685 | INFO     | --------------------------------------------------
[2025-12-21 18:06:53] 2025-12-21 17:02:55,685 | INFO     | PanDA job id: 6935897008
[2025-12-21 18:06:53] 2025-12-21 17:02:55,685 | INFO     | task id: 47929392
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | errors: (none)
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | pilot state: finished 
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | transexitcode: 0
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | exeerrorcode: 0
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | exeerrordiag: 
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | exitcode: 0
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | exitmsg: OK
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | cpuconsumptiontime: 38431 s
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | nevents: 400
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | neventsw: 0
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | pid: 554603
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | pgrp: 554603
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | corecount: 12
[2025-12-21 18:06:53] 2025-12-21 17:02:55,686 | INFO     | event service: False
[2025-12-21 18:06:53] 2025-12-21 17:02:55,687 | INFO     | sizes: {0: 2283191, 1: 2283877, 2: 2284076, 12: 2284076, 23: 2284104, 34: 2284550, 45: 2284550, 5190: 2311038, 5193: 2320038, 5196: 2320122, 5239: 2320316}
[2025-12-21 18:06:53] 2025-12-21 17:02:55,687 | INFO     | --------------------------------------------------
[2025-12-21 18:06:53] 2025-12-21 17:02:55,687 | INFO     | 
[2025-12-21 18:06:53] 2025-12-21 17:02:55,687 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-12-21 18:06:53] 2025-12-21 17:02:55,867 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,868 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,869 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,869 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,869 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,869 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-21 18:06:53] 2025-12-21 17:02:55,869 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,869 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-21 18:06:53] 2025-12-21 17:02:55,869 | INFO     | job 6935897008 has completed (purged errors)
[2025-12-21 18:06:53] 2025-12-21 17:02:55,869 | INFO     | overall cleanup function is called
[2025-12-21 18:06:53] 2025-12-21 17:02:56,879 | INFO     | --- collectZombieJob: --- 10, [554603]
[2025-12-21 18:06:53] 2025-12-21 17:02:56,879 | INFO     | zombie collector waiting for pid 554603
[2025-12-21 18:06:53] 2025-12-21 17:02:56,879 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-21 18:06:53] 2025-12-21 17:02:56,879 | INFO     | collected zombie processes
[2025-12-21 18:06:53] 2025-12-21 17:02:56,879 | INFO     | will attempt to kill all subprocesses of pid=554603
[2025-12-21 18:06:53] 2025-12-21 17:02:57,962 | INFO     | process IDs to be killed: [554603] (in reverse order)
[2025-12-21 18:06:53] 2025-12-21 17:02:58,447 | WARNING  | found no corresponding commands to process id(s)
[2025-12-21 18:06:53] 2025-12-21 17:02:58,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-21 18:06:53] 2025-12-21 17:02:58,470 | INFO     | did not find any defunct processes belonging to 554603
[2025-12-21 18:06:53] 2025-12-21 17:02:58,491 | INFO     | did not find any defunct processes belonging to 554603
[2025-12-21 18:06:53] 2025-12-21 17:02:58,491 | INFO     | ready for new job
[2025-12-21 18:06:53] 2025-12-21 17:02:58,491 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-21 18:06:53] 2025-12-21 17:02:58,493 | INFO     | ***************************************
[2025-12-21 18:06:53] 2025-12-21 17:02:58,493 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-21 18:06:53] 2025-12-21 17:02:58,493 | INFO     | ***************************************
[2025-12-21 18:06:53] 2025-12-21 17:02:58,493 | INFO     | 
[2025-12-21 18:06:53] 2025-12-21 17:02:58,498 | INFO     | architecture information:
[2025-12-21 18:06:53] 2025-12-21 17:02:58,499 | INFO     | executing command: cat /etc/os-release
[2025-12-21 18:06:53] 2025-12-21 17:02:58,535 | INFO     | cat /etc/os-release:
[2025-12-21 18:06:53] NAME="CentOS Linux"
[2025-12-21 18:06:53] VERSION="7 (Core)"
[2025-12-21 18:06:53] ID="centos"
[2025-12-21 18:06:53] ID_LIKE="rhel fedora"
[2025-12-21 18:06:53] VERSION_ID="7"
[2025-12-21 18:06:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-21 18:06:53] ANSI_COLOR="0;31"
[2025-12-21 18:06:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-21 18:06:53] HOME_URL="https://www.centos.org/"
[2025-12-21 18:06:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-21 18:06:53] 
[2025-12-21 18:06:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-21 18:06:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-21 18:06:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-21 18:06:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-21 18:06:53] 
[2025-12-21 18:06:53] 2025-12-21 17:02:58,536 | INFO     | ***************************************
[2025-12-21 18:06:53] 2025-12-21 17:02:59,038 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-12-21 18:06:53] 2025-12-21 17:02:59,124 | INFO     | sufficient remaining disk space (1613272973312 B)
[2025-12-21 18:06:53] 2025-12-21 17:02:59,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-21 18:06:53] 2025-12-21 17:02:59,125 | INFO     | current server update state: UPDATING_FINAL
[2025-12-21 18:06:53] 2025-12-21 17:02:59,125 | INFO     | update_server=False
[2025-12-21 18:06:53] 2025-12-21 17:02:59,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-21 18:06:53] 2025-12-21 17:02:59,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-21 18:06:53] 2025-12-21 17:02:59,126 | INFO     | aborting loop
[2025-12-21 18:06:53] 2025-12-21 17:03:00,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-21 18:06:53] 2025-12-21 17:03:00,132 | INFO     | [job] job monitor thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:00,133 | INFO     | [job] retrieve thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:00,196 | INFO     | all data control threads have been joined
[2025-12-21 18:06:53] 2025-12-21 17:03:00,307 | INFO     | [payload] failed_post thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:00,449 | INFO     | [job] validate thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:00,581 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-21 18:06:53] 2025-12-21 17:03:00,591 | INFO     | [job] create_data_payload thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:00,617 | INFO     | [payload] execute_payloads thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:00,641 | INFO     | all payload control threads have been joined
[2025-12-21 18:06:53] 2025-12-21 17:03:00,681 | INFO     | all job control threads have been joined
[2025-12-21 18:06:53] 2025-12-21 17:03:00,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-21 18:06:53] 2025-12-21 17:03:01,024 | INFO     | [data] copytool_in thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:01,204 | INFO     | [data] control thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:01,208 | INFO     | [payload] validate_pre thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:01,259 | INFO     | [payload] validate_post thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:01,304 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:01,646 | INFO     | [payload] control thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:01,686 | INFO     | [job] control thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:01,711 | INFO     | [job] queue monitor thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:02,589 | INFO     | [data] copytool_out thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:04,087 | INFO     | [data] queue_monitor thread has finished
[2025-12-21 18:06:53] 2025-12-21 17:03:28,763 | INFO     | PID=539874 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-21 18:06:53] 2025-12-21 17:03:28,763 | INFO     | .. there are 64 such processes running
[2025-12-21 18:06:53] 2025-12-21 17:03:28,763 | INFO     | found 0 job(s) in 20 queues
[2025-12-21 18:06:53] 2025-12-21 17:03:28,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-21 18:06:53] 2025-12-21 17:03:28,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-21 18:06:53] 2025-12-21 17:03:35,418 | INFO     | [monitor] cgroup control has ended
[2025-12-21 18:06:53] 2025-12-21 17:03:37,143 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819593557824)>', '<ExcThread(monitor, started 139819204196096)>']
[2025-12-21 18:06:53] 2025-12-21 17:03:37,834 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-21 18:06:53] 2025-12-21 17:03:37,834 | INFO     | [monitor] control thread has ended
[2025-12-21 18:06:53] 2025-12-21 17:03:42,169 | INFO     | all workflow threads have been joined
[2025-12-21 18:06:53] 2025-12-21 17:03:42,169 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-21 18:06:53] 2025-12-21 17:03:42,169 | INFO     | traces error code: 0
[2025-12-21 18:06:53] 2025-12-21 17:03:42,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-21 18:06:53] 2025-12-21 17:03:42,482 [wrapper] ==== pilot stdout END ====
[2025-12-21 18:06:53] 2025-12-21 17:03:42,528 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-21 18:06:53] 2025-12-21 17:03:42,568 [wrapper] pilotpid: 539874
[2025-12-21 18:06:53] 2025-12-21 17:03:42,609 [wrapper] Pilot exit status: 0
[2025-12-21 18:06:53] 2025-12-21 17:03:42,772 [wrapper] pandaids: 6935897008
[2025-12-21 18:06:53] 2025-12-21 17:03:43,082 [wrapper] cleanup supervisor_pilot  983281 539875
[2025-12-21 18:06:53] 2025-12-21 17:03:43,090 [wrapper] Test setup, not cleaning
[2025-12-21 18:06:53] 2025-12-21 17:03:43,100 [wrapper] apfmon messages muted
[2025-12-21 18:06:53] 2025-12-21 17:03:43,115 [wrapper] ==== wrapper stdout END ====
[2025-12-21 18:06:53] 2025-12-21 17:03:43,121 [wrapper] ==== wrapper stderr END ====
[2025-12-21 18:06:53]  *** Error codes and diagnostics ***
[2025-12-21 18:06:53]     "exeErrorCode": 0,
[2025-12-21 18:06:53]     "exeErrorDiag": "",
[2025-12-21 18:06:53]     "pilotErrorCode": 0,
[2025-12-21 18:06:53]     "pilotErrorDiag": "",
[2025-12-21 18:06:53]  *** Listing of results directory ***
[2025-12-21 18:06:53] total 437904
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc    579449 Dec 19 20:58 pilot3.tar.gz
[2025-12-21 18:06:53] -rwx------ 1 boinc boinc     36322 Dec 19 21:03 runpilot2-wrapper.sh
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc      5112 Dec 19 21:08 queuedata.json
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc       100 Dec 21 16:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-21 18:06:53] -rwxr-xr-x 1 boinc boinc      7986 Dec 21 16:33 run_atlas
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc       105 Dec 21 16:33 job.xml
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc      6675 Dec 21 16:33 init_data.xml
[2025-12-21 18:06:53] -rw-r--r-- 2 boinc boinc 253232680 Dec 21 16:33 EVNT.47929390._000172.pool.root.1
[2025-12-21 18:06:53] -rw-r--r-- 2 boinc boinc    592401 Dec 21 16:33 input.tar.gz
[2025-12-21 18:06:53] -rw-r--r-- 2 boinc boinc     15847 Dec 21 16:33 start_atlas.sh
[2025-12-21 18:06:53] drwxrwx--x 2 boinc boinc      4096 Dec 21 16:33 shared
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc         0 Dec 21 16:33 boinc_lockfile
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc      2551 Dec 21 16:33 pandaJob.out
[2025-12-21 18:06:53] -rw------- 1 boinc boinc    988146 Dec 21 16:34 agis_schedconf.cvmfs.json
[2025-12-21 18:06:53] -rw------- 1 boinc boinc   1516240 Dec 21 16:34 agis_ddmendpoints.agis.ALL.json
[2025-12-21 18:06:53] drwx------ 5 boinc boinc      4096 Dec 21 16:34 pilot3
[2025-12-21 18:06:53] -rw------- 1 boinc boinc 189028495 Dec 21 18:01 HITS.47929392._004034.pool.root.1
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc       529 Dec 21 18:01 boinc_task_state.xml
[2025-12-21 18:06:53] -rw------- 1 boinc boinc      1022 Dec 21 18:02 memory_monitor_summary.json
[2025-12-21 18:06:53] -rw------- 1 boinc boinc    385428 Dec 21 18:02 log.47929392._004034.job.log.tgz.1
[2025-12-21 18:06:53] -rw------- 1 boinc boinc      7779 Dec 21 18:02 heartbeat.json
[2025-12-21 18:06:53] -rw------- 1 boinc boinc        95 Dec 21 18:03 pilot_heartbeat.json
[2025-12-21 18:06:53] -rw------- 1 boinc boinc      4826 Dec 21 18:03 pilotlog.txt
[2025-12-21 18:06:53] -rw------- 1 boinc boinc    732151 Dec 21 18:03 log.47929392._004034.job.log.1
[2025-12-21 18:06:53] -rw------- 1 boinc boinc       357 Dec 21 18:03 output.list
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc       620 Dec 21 18:03 runtime_log
[2025-12-21 18:06:53] -rw------- 1 boinc boinc   1136640 Dec 21 18:03 result.tar.gz
[2025-12-21 18:06:53] -rw------- 1 boinc boinc       663 Dec 21 18:03 ykPNDmCsvq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWAcKDmphSGAo.diag
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc      8880 Dec 21 18:03 runtime_log.err
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc      8192 Dec 21 18:06 boinc_mmap_file
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc     22441 Dec 21 18:06 stderr.txt
[2025-12-21 18:06:53] -rw-r--r-- 1 boinc boinc        26 Dec 21 18:06 wrapper_checkpoint.txt
[2025-12-21 18:06:53] HITS file was successfully produced:
[2025-12-21 18:06:53] -rw------- 1 boinc boinc 189028495 Dec 21 18:01 shared/HITS.pool.root.1
[2025-12-21 18:06:53]  *** Contents of shared directory: ***
[2025-12-21 18:06:53] total 433616
[2025-12-21 18:06:53] -rw-r--r-- 2 boinc boinc 253232680 Dec 21 16:33 ATLAS.root_0
[2025-12-21 18:06:53] -rw-r--r-- 2 boinc boinc    592401 Dec 21 16:33 input.tar.gz
[2025-12-21 18:06:53] -rw-r--r-- 2 boinc boinc     15847 Dec 21 16:33 start_atlas.sh
[2025-12-21 18:06:53] -rw------- 1 boinc boinc 189028495 Dec 21 18:01 HITS.pool.root.1
[2025-12-21 18:06:53] -rw------- 1 boinc boinc   1136640 Dec 21 18:03 result.tar.gz
18:06:55 (534152): run_atlas exited; CPU time 38628.748370
18:06:55 (534152): called boinc_finish(0)

</stderr_txt>
]]>

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