Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:12:53 (183787): wrapper (7.7.26015): starting
15:12:53 (183787): wrapper: running run_atlas (--nthreads 12)
[2025-12-21 15:12:53] Arguments: --nthreads 12
[2025-12-21 15:12:53] Threads: 12
[2025-12-21 15:12:53] Checking for CVMFS
[2025-12-21 15:12:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-21 15:12:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-21 15:12:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-21 15:12:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-21 15:12:54] 2.13.3.0 525390 12058 266616 154263 1 669 40220198 46080000 31650 130560 0 96829590 99.813 47163666 24973 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-12-21 15:12:54] CVMFS is ok
[2025-12-21 15:12:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-21 15:12:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-21 15:12:54] Further information can be found at the LHC@home message board.
[2025-12-21 15:12:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-21 15:12:54] Checking for apptainer binary...
[2025-12-21 15:12:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-21 15:12:54] Running /usr/bin/apptainer --version
[2025-12-21 15:12:54] apptainer version 1.4.4-1.el9
[2025-12-21 15:12:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-21 15:12:55] mff2102.farm.particle.cz
[2025-12-21 15:12:55] apptainer works
[2025-12-21 15:12:55] Set ATHENA_PROC_NUMBER=12
[2025-12-21 15:12:55] Set ATHENA_CORE_NUMBER=12
[2025-12-21 15:12:55] Starting ATLAS job with PandaID=6935439865
[2025-12-21 15:12:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-22 06:07:54]  *** The last 200 lines of the pilot log: ***
[2025-12-22 06:07:54] 2025-12-22 05:06:48,751 | INFO     | PID=188448 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-22 06:07:54] 2025-12-22 05:06:48,751 | INFO     | .. there are 74 such processes running
[2025-12-22 06:07:54] 2025-12-22 05:06:49,752 | INFO     | time since job start (53561s) is within the limit (174528.0s)
[2025-12-22 06:07:54] 2025-12-22 05:06:50,108 | INFO     | monitor loop #3383: job 0:6935439865 is in state 'finished'
[2025-12-22 06:07:54] 2025-12-22 05:06:50,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 06:07:54] 2025-12-22 05:06:51,759 | INFO     | time since job start (53563s) is within the limit (174528.0s)
[2025-12-22 06:07:54] 2025-12-22 05:06:52,616 | INFO     | monitor loop #3384: job 0:6935439865 is in state 'finished'
[2025-12-22 06:07:54] 2025-12-22 05:06:52,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 06:07:54] 2025-12-22 05:06:53,766 | INFO     | time since job start (53565s) is within the limit (174528.0s)
[2025-12-22 06:07:54] 2025-12-22 05:06:55,122 | INFO     | monitor loop #3385: job 0:6935439865 is in state 'finished'
[2025-12-22 06:07:54] 2025-12-22 05:06:55,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 06:07:54] 2025-12-22 05:06:55,772 | INFO     | time since job start (53567s) is within the limit (174528.0s)
[2025-12-22 06:07:54] 2025-12-22 05:06:57,627 | INFO     | monitor loop #3386: job 0:6935439865 is in state 'finished'
[2025-12-22 06:07:54] 2025-12-22 05:06:57,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 06:07:54] 2025-12-22 05:06:57,783 | INFO     | time since job start (53569s) is within the limit (174528.0s)
[2025-12-22 06:07:54] 2025-12-22 05:06:59,792 | INFO     | time since job start (53571s) is within the limit (174528.0s)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,116 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-22 06:07:54] 2025-12-22 05:07:00,132 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2784.5719062500007
[2025-12-22 06:07:54] 2025-12-22 05:07:00,140 | INFO     | monitor loop #3387: job 0:6935439865 is in state 'finished'
[2025-12-22 06:07:54] 2025-12-22 05:07:00,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,154 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6935439865/memory_monitor_summary.json (trf name=prmon)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,155 | INFO     | extracted standard info from prmon json
[2025-12-22 06:07:54] 2025-12-22 05:07:00,155 | INFO     | extracted standard memory fields from prmon json
[2025-12-22 06:07:54] 2025-12-22 05:07:00,155 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-22 06:07:54] 2025-12-22 05:07:00,175 | INFO     | fitting pss+swap vs Time
[2025-12-22 06:07:54] 2025-12-22 05:07:00,176 | INFO     | sum of square deviations: 207728342116.8308
[2025-12-22 06:07:54] 2025-12-22 05:07:00,201 | INFO     | sum of deviations: 2284742556965.133
[2025-12-22 06:07:54] 2025-12-22 05:07:00,201 | INFO     | mean x: 1766353272.9634285
[2025-12-22 06:07:54] 2025-12-22 05:07:00,201 | INFO     | mean y: 3380548.848
[2025-12-22 06:07:54] 2025-12-22 05:07:00,201 | INFO     | intersect: -19424216341.635307
[2025-12-22 06:07:54] 2025-12-22 05:07:00,202 | INFO     | chi2: 32.921480616477055
[2025-12-22 06:07:54] 2025-12-22 05:07:00,203 | INFO     | sum of square deviations: 204188064814.94363
[2025-12-22 06:07:54] 2025-12-22 05:07:00,233 | INFO     | sum of deviations: 2641512808448.936
[2025-12-22 06:07:54] 2025-12-22 05:07:00,233 | INFO     | mean x: 1766353120.4747126
[2025-12-22 06:07:54] 2025-12-22 05:07:00,233 | INFO     | mean y: 3395917.8379310346
[2025-12-22 06:07:54] 2025-12-22 05:07:00,233 | INFO     | intersect: -22847324550.110924
[2025-12-22 06:07:54] 2025-12-22 05:07:00,234 | INFO     | chi2: 29.36913460645659
[2025-12-22 06:07:54] 2025-12-22 05:07:00,234 | INFO     | current chi2=29.36913460645659 (change=10.79035919254048 %)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,235 | INFO     | right removable region: 869
[2025-12-22 06:07:54] 2025-12-22 05:07:00,236 | INFO     | sum of square deviations: 204187016834.9436
[2025-12-22 06:07:54] 2025-12-22 05:07:00,252 | INFO     | sum of deviations: 1851844707674.516
[2025-12-22 06:07:54] 2025-12-22 05:07:00,252 | INFO     | mean x: 1766353425.4747126
[2025-12-22 06:07:54] 2025-12-22 05:07:00,252 | INFO     | mean y: 3399190.364367816
[2025-12-22 06:07:54] 2025-12-22 05:07:00,252 | INFO     | intersect: -16016288513.34625
[2025-12-22 06:07:54] 2025-12-22 05:07:00,253 | INFO     | chi2: 28.096683336273575
[2025-12-22 06:07:54] 2025-12-22 05:07:00,253 | INFO     | current chi2=28.096683336273575 (change=14.655468678370104 %)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,253 | INFO     | left removable region: 10
[2025-12-22 06:07:54] 2025-12-22 05:07:00,254 | INFO     | sum of square deviations: 196539471222.0
[2025-12-22 06:07:54] 2025-12-22 05:07:00,270 | INFO     | sum of deviations: 1894440496593.0007
[2025-12-22 06:07:54] 2025-12-22 05:07:00,270 | INFO     | mean x: 1766353395.0
[2025-12-22 06:07:54] 2025-12-22 05:07:00,271 | INFO     | mean y: 3435847.7031431897
[2025-12-22 06:07:54] 2025-12-22 05:07:00,271 | INFO     | intersect: -17022413372.186096
[2025-12-22 06:07:54] 2025-12-22 05:07:00,271 | INFO     | chi2: 19.66381299154773
[2025-12-22 06:07:54] 2025-12-22 05:07:00,272 | INFO     | current memory leak: 9.64 B/s (using 859 data points, chi2=19.66)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,273 | INFO     | could have reported an average CPU frequency of 2758 MHz (32 samples)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,273 | INFO     | ..............................
[2025-12-22 06:07:54] 2025-12-22 05:07:00,273 | INFO     | . Timing measurements:
[2025-12-22 06:07:54] 2025-12-22 05:07:00,273 | INFO     | . get job = 0 s
[2025-12-22 06:07:54] 2025-12-22 05:07:00,274 | INFO     | . initial setup = 4 s
[2025-12-22 06:07:54] 2025-12-22 05:07:00,274 | INFO     | . payload setup = 52 s
[2025-12-22 06:07:54] 2025-12-22 05:07:00,274 | INFO     | . stage-in = 0 s
[2025-12-22 06:07:54] 2025-12-22 05:07:00,274 | INFO     | . payload execution = 53395 s
[2025-12-22 06:07:54] 2025-12-22 05:07:00,274 | INFO     | . stage-out = 3 s
[2025-12-22 06:07:54] 2025-12-22 05:07:00,274 | INFO     | . log creation = 1 s
[2025-12-22 06:07:54] 2025-12-22 05:07:00,274 | INFO     | ..............................
[2025-12-22 06:07:54] 2025-12-22 05:07:00,380 | INFO     | 
[2025-12-22 06:07:54] 2025-12-22 05:07:00,380 | INFO     | job summary report
[2025-12-22 06:07:54] 2025-12-22 05:07:00,380 | INFO     | --------------------------------------------------
[2025-12-22 06:07:54] 2025-12-22 05:07:00,380 | INFO     | PanDA job id: 6935439865
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | task id: 47960988
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | errors: (none)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | pilot state: finished 
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | transexitcode: 0
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | exeerrorcode: 0
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | exeerrordiag: 
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | exitcode: 0
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | exitmsg: OK
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | cpuconsumptiontime: 299236 s
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | nevents: 1000
[2025-12-22 06:07:54] 2025-12-22 05:07:00,381 | INFO     | neventsw: 0
[2025-12-22 06:07:54] 2025-12-22 05:07:00,382 | INFO     | pid: 207626
[2025-12-22 06:07:54] 2025-12-22 05:07:00,382 | INFO     | pgrp: 207626
[2025-12-22 06:07:54] 2025-12-22 05:07:00,382 | INFO     | corecount: 12
[2025-12-22 06:07:54] 2025-12-22 05:07:00,382 | INFO     | event service: False
[2025-12-22 06:07:54] 2025-12-22 05:07:00,382 | INFO     | sizes: {0: 2284425, 1: 2284624, 12: 2284624, 22: 2284652, 33: 2284680, 42: 2284998, 44: 2285182, 53452: 2334609, 53456: 2343605, 53457: 2343661, 53497: 2343907}
[2025-12-22 06:07:54] 2025-12-22 05:07:00,382 | INFO     | --------------------------------------------------
[2025-12-22 06:07:54] 2025-12-22 05:07:00,382 | INFO     | 
[2025-12-22 06:07:54] 2025-12-22 05:07:00,382 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-12-22 06:07:54] 2025-12-22 05:07:00,586 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,587 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | job 6935439865 has completed (purged errors)
[2025-12-22 06:07:54] 2025-12-22 05:07:00,588 | INFO     | overall cleanup function is called
[2025-12-22 06:07:54] 2025-12-22 05:07:01,616 | INFO     | --- collectZombieJob: --- 10, [207626]
[2025-12-22 06:07:54] 2025-12-22 05:07:01,616 | INFO     | zombie collector waiting for pid 207626
[2025-12-22 06:07:54] 2025-12-22 05:07:01,616 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-22 06:07:54] 2025-12-22 05:07:01,616 | INFO     | collected zombie processes
[2025-12-22 06:07:54] 2025-12-22 05:07:01,616 | INFO     | will attempt to kill all subprocesses of pid=207626
[2025-12-22 06:07:54] 2025-12-22 05:07:02,400 | INFO     | process IDs to be killed: [207626] (in reverse order)
[2025-12-22 06:07:54] 2025-12-22 05:07:02,924 | WARNING  | found no corresponding commands to process id(s)
[2025-12-22 06:07:54] 2025-12-22 05:07:02,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-22 06:07:54] 2025-12-22 05:07:02,956 | INFO     | did not find any defunct processes belonging to 207626
[2025-12-22 06:07:54] 2025-12-22 05:07:02,984 | INFO     | did not find any defunct processes belonging to 207626
[2025-12-22 06:07:54] 2025-12-22 05:07:02,984 | INFO     | ready for new job
[2025-12-22 06:07:54] 2025-12-22 05:07:02,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-22 06:07:54] 2025-12-22 05:07:02,989 | INFO     | ***************************************
[2025-12-22 06:07:54] 2025-12-22 05:07:02,989 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-22 06:07:54] 2025-12-22 05:07:02,989 | INFO     | ***************************************
[2025-12-22 06:07:54] 2025-12-22 05:07:02,989 | INFO     | 
[2025-12-22 06:07:54] 2025-12-22 05:07:02,995 | INFO     | architecture information:
[2025-12-22 06:07:54] 2025-12-22 05:07:02,995 | INFO     | executing command: cat /etc/os-release
[2025-12-22 06:07:54] 2025-12-22 05:07:03,072 | INFO     | cat /etc/os-release:
[2025-12-22 06:07:54] NAME="CentOS Linux"
[2025-12-22 06:07:54] VERSION="7 (Core)"
[2025-12-22 06:07:54] ID="centos"
[2025-12-22 06:07:54] ID_LIKE="rhel fedora"
[2025-12-22 06:07:54] VERSION_ID="7"
[2025-12-22 06:07:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-22 06:07:54] ANSI_COLOR="0;31"
[2025-12-22 06:07:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-22 06:07:54] HOME_URL="https://www.centos.org/"
[2025-12-22 06:07:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-22 06:07:54] 
[2025-12-22 06:07:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-22 06:07:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-22 06:07:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-22 06:07:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-22 06:07:54] 
[2025-12-22 06:07:54] 2025-12-22 05:07:03,073 | INFO     | ***************************************
[2025-12-22 06:07:54] 2025-12-22 05:07:03,579 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-12-22 06:07:54] 2025-12-22 05:07:03,707 | INFO     | sufficient remaining disk space (1659826601984 B)
[2025-12-22 06:07:54] 2025-12-22 05:07:03,708 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-22 06:07:54] 2025-12-22 05:07:03,708 | INFO     | current server update state: UPDATING_FINAL
[2025-12-22 06:07:54] 2025-12-22 05:07:03,708 | INFO     | update_server=False
[2025-12-22 06:07:54] 2025-12-22 05:07:03,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-22 06:07:54] 2025-12-22 05:07:03,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-22 06:07:54] 2025-12-22 05:07:03,709 | INFO     | aborting loop
[2025-12-22 06:07:54] 2025-12-22 05:07:03,881 | INFO     | all payload control threads have been joined
[2025-12-22 06:07:54] 2025-12-22 05:07:03,979 | INFO     | all job control threads have been joined
[2025-12-22 06:07:54] 2025-12-22 05:07:04,436 | INFO     | all data control threads have been joined
[2025-12-22 06:07:54] 2025-12-22 05:07:04,714 | INFO     | [job] retrieve thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:04,715 | INFO     | [job] job monitor thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:04,782 | INFO     | [data] copytool_in thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:04,887 | INFO     | [payload] control thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:04,956 | INFO     | [job] validate thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:04,960 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-22 06:07:54] 2025-12-22 05:07:04,986 | INFO     | [job] control thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:05,078 | INFO     | [payload] failed_post thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:05,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-22 06:07:54] 2025-12-22 05:07:05,442 | INFO     | [data] control thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:05,461 | INFO     | [payload] validate_pre thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:05,653 | INFO     | [payload] execute_payloads thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:06,107 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:06,120 | INFO     | [job] create_data_payload thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:06,242 | INFO     | [payload] validate_post thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:06,400 | INFO     | [job] queue monitor thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:06,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-22 06:07:54] 2025-12-22 05:07:06,967 | INFO     | [data] copytool_out thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:10,437 | INFO     | [data] queue_monitor thread has finished
[2025-12-22 06:07:54] 2025-12-22 05:07:33,890 | INFO     | PID=188448 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-22 06:07:54] 2025-12-22 05:07:33,890 | INFO     | .. there are 74 such processes running
[2025-12-22 06:07:54] 2025-12-22 05:07:33,891 | INFO     | found 0 job(s) in 20 queues
[2025-12-22 06:07:54] 2025-12-22 05:07:33,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-22 06:07:54] 2025-12-22 05:07:33,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-22 06:07:54] 2025-12-22 05:07:38,723 | INFO     | [monitor] cgroup control has ended
[2025-12-22 06:07:54] 2025-12-22 05:07:39,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752163649344)>', '<ExcThread(monitor, started 139751810111232)>']
[2025-12-22 06:07:54] 2025-12-22 05:07:39,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-22 06:07:54] 2025-12-22 05:07:39,927 | INFO     | [monitor] control thread has ended
[2025-12-22 06:07:54] 2025-12-22 05:07:44,758 | INFO     | all workflow threads have been joined
[2025-12-22 06:07:54] 2025-12-22 05:07:44,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-22 06:07:54] 2025-12-22 05:07:44,759 | INFO     | traces error code: 0
[2025-12-22 06:07:54] 2025-12-22 05:07:44,759 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-22 06:07:54] 2025-12-22 05:07:44,954 [wrapper] ==== pilot stdout END ====
[2025-12-22 06:07:54] 2025-12-22 05:07:44,999 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-22 06:07:54] 2025-12-22 05:07:45,028 [wrapper] pilotpid: 188448
[2025-12-22 06:07:54] 2025-12-22 05:07:45,070 [wrapper] Pilot exit status: 0
[2025-12-22 06:07:54] 2025-12-22 05:07:45,220 [wrapper] pandaids: 6935439865
[2025-12-22 06:07:54] 2025-12-22 05:07:45,758 [wrapper] cleanup supervisor_pilot 3370060 188449
[2025-12-22 06:07:54] 2025-12-22 05:07:45,790 [wrapper] Test setup, not cleaning
[2025-12-22 06:07:54] 2025-12-22 05:07:45,827 [wrapper] apfmon messages muted
[2025-12-22 06:07:54] 2025-12-22 05:07:45,857 [wrapper] ==== wrapper stdout END ====
[2025-12-22 06:07:54] 2025-12-22 05:07:45,891 [wrapper] ==== wrapper stderr END ====
[2025-12-22 06:07:54]  *** Error codes and diagnostics ***
[2025-12-22 06:07:54]     "exeErrorCode": 0,
[2025-12-22 06:07:54]     "exeErrorDiag": "",
[2025-12-22 06:07:54]     "pilotErrorCode": 0,
[2025-12-22 06:07:54]     "pilotErrorDiag": "",
[2025-12-22 06:07:54]  *** Listing of results directory ***
[2025-12-22 06:07:54] total 1396284
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc    579449 Dec 19 14:33 pilot3.tar.gz
[2025-12-22 06:07:54] -rwx------ 1 boinc boinc     36322 Dec 19 14:34 runpilot2-wrapper.sh
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc      5112 Dec 19 14:34 queuedata.json
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc       100 Dec 21 15:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-22 06:07:54] -rwxr-xr-x 1 boinc boinc      7986 Dec 21 15:12 run_atlas
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc       105 Dec 21 15:12 job.xml
[2025-12-22 06:07:54] -rw-r--r-- 2 boinc boinc 414258356 Dec 21 15:12 EVNT.47960986._000092.pool.root.1
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc      6675 Dec 21 15:12 init_data.xml
[2025-12-22 06:07:54] -rw-r--r-- 2 boinc boinc     15847 Dec 21 15:12 start_atlas.sh
[2025-12-22 06:07:54] drwxrwx--x 2 boinc boinc      4096 Dec 21 15:12 shared
[2025-12-22 06:07:54] -rw-r--r-- 2 boinc boinc    592606 Dec 21 15:12 input.tar.gz
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc         0 Dec 21 15:12 boinc_lockfile
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc      2874 Dec 21 15:12 pandaJob.out
[2025-12-22 06:07:54] -rw------- 1 boinc boinc    988146 Dec 21 15:14 agis_schedconf.cvmfs.json
[2025-12-22 06:07:54] drwx------ 5 boinc boinc      4096 Dec 21 15:14 pilot3
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc       532 Dec 22 05:41 boinc_task_state.xml
[2025-12-22 06:07:54] -rw------- 1 boinc boinc 992465370 Dec 22 06:05 HITS.47960988._000411.pool.root.1
[2025-12-22 06:07:54] -rw------- 1 boinc boinc      1039 Dec 22 06:06 memory_monitor_summary.json
[2025-12-22 06:07:54] -rw------- 1 boinc boinc   1516240 Dec 22 06:06 agis_ddmendpoints.agis.ALL.json
[2025-12-22 06:07:54] -rw------- 1 boinc boinc   2515832 Dec 22 06:06 log.47960988._000411.job.log.tgz.1
[2025-12-22 06:07:54] -rw------- 1 boinc boinc      7927 Dec 22 06:07 heartbeat.json
[2025-12-22 06:07:54] -rw------- 1 boinc boinc        95 Dec 22 06:07 pilot_heartbeat.json
[2025-12-22 06:07:54] -rw------- 1 boinc boinc      4826 Dec 22 06:07 pilotlog.txt
[2025-12-22 06:07:54] -rw------- 1 boinc boinc   7058070 Dec 22 06:07 log.47960988._000411.job.log.1
[2025-12-22 06:07:54] -rw------- 1 boinc boinc       353 Dec 22 06:07 output.list
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc       620 Dec 22 06:07 runtime_log
[2025-12-22 06:07:54] -rw------- 1 boinc boinc   9594880 Dec 22 06:07 result.tar.gz
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc      8881 Dec 22 06:07 runtime_log.err
[2025-12-22 06:07:54] -rw------- 1 boinc boinc       671 Dec 22 06:07 83cMDmWnpq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdIbKDmJ3zZbn.diag
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc        28 Dec 22 06:07 wrapper_checkpoint.txt
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc      8192 Dec 22 06:07 boinc_mmap_file
[2025-12-22 06:07:54] -rw-r--r-- 1 boinc boinc     21787 Dec 22 06:07 stderr.txt
[2025-12-22 06:07:54] HITS file was successfully produced:
[2025-12-22 06:07:54] -rw------- 1 boinc boinc 992465370 Dec 22 06:05 shared/HITS.pool.root.1
[2025-12-22 06:07:54]  *** Contents of shared directory: ***
[2025-12-22 06:07:54] total 1383736
[2025-12-22 06:07:54] -rw-r--r-- 2 boinc boinc 414258356 Dec 21 15:12 ATLAS.root_0
[2025-12-22 06:07:54] -rw-r--r-- 2 boinc boinc     15847 Dec 21 15:12 start_atlas.sh
[2025-12-22 06:07:54] -rw-r--r-- 2 boinc boinc    592606 Dec 21 15:12 input.tar.gz
[2025-12-22 06:07:54] -rw------- 1 boinc boinc 992465370 Dec 22 06:05 HITS.pool.root.1
[2025-12-22 06:07:54] -rw------- 1 boinc boinc   9594880 Dec 22 06:07 result.tar.gz
06:07:56 (183787): run_atlas exited; CPU time 300672.518637
06:07:56 (183787): called boinc_finish(0)

</stderr_txt>
]]>

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