Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:39:53 (343410): wrapper (7.7.26015): starting
12:39:53 (343410): wrapper: running run_atlas (--nthreads 12)
[2025-12-20 12:39:53] Arguments: --nthreads 12
[2025-12-20 12:39:53] Threads: 12
[2025-12-20 12:39:53] Checking for CVMFS
[2025-12-20 12:39:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-20 12:39:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-20 12:39:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-20 12:39:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-20 12:39:55] 2.11.5.0 2137812 28243 371476 154237 2 548 31234955 45568001 14929 130560 0 177576811 99.795 118809872 24276 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-20 12:39:55] CVMFS is ok
[2025-12-20 12:39:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-20 12:39:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-20 12:39:55] Further information can be found at the LHC@home message board.
[2025-12-20 12:39:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-20 12:39:55] Checking for apptainer binary...
[2025-12-20 12:39:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-20 12:39:55] Running /usr/bin/apptainer --version
[2025-12-20 12:39:55] apptainer version 1.4.1-1.el9
[2025-12-20 12:39:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-20 12:39:55] wns0059.triumf.lcg
[2025-12-20 12:39:55] apptainer works
[2025-12-20 12:39:55] Set ATHENA_PROC_NUMBER=12
[2025-12-20 12:39:55] Set ATHENA_CORE_NUMBER=12
[2025-12-20 12:39:55] Starting ATLAS job with PandaID=6938192316
[2025-12-20 12:39:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-20 12:49:39]  *** The last 200 lines of the pilot log: ***
[2025-12-20 12:49:39] 2025-12-20 20:48:44,992 | WARNING  | wrong length of table data, x=[1766263315.0, 1766263376.0, 1766263437.0, 1766263498.0, 1766263559.0], y=[935.0, 223420.0, 438966.0, 607320.0, 545149.0] (must be sa
[2025-12-20 12:49:39] 2025-12-20 20:48:44,992 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | ..............................
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . Timing measurements:
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . get job = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . initial setup = 5 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . payload setup = 16 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . stage-in = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . payload execution = 289 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . stage-out = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . log creation = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | ..............................
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6938192316/pilotlog.txt
[2025-12-20 12:49:39] 2025-12-20 20:48:45,085 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-20 12:49:39] - Log from pilotlog.txt -
[2025-12-20 12:49:39] 2025-12-20 20:48:44,990 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6938192316/memory_monitor_summary.json (trf name=prmon)
[2025-12-20 12:49:39] 2025-12-20 20:48:44,990 | INFO     | extracted standard info from prmon json
[2025-12-20 12:49:39] 2025-12-20 20:48:44,990 | INFO     | extracted standard memory fields from prmon json
[2025-12-20 12:49:39] 2025-12-20 20:48:44,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-20 12:49:39] 2025-12-20 20:48:44,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-20 12:49:39] 2025-12-20 20:48:44,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-20 12:49:39] 2025-12-20 20:48:44,992 | WARNING  | wrong length of table data, x=[1766263315.0, 1766263376.0, 1766263437.0, 1766263498.0, 1766263559.0], y=[935.0, 223420.0, 438966.0, 607320.0, 545149.0] (must be sa
[2025-12-20 12:49:39] 2025-12-20 20:48:44,992 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | ..............................
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . Timing measurements:
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . get job = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . initial setup = 5 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . payload setup = 16 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . stage-in = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . payload execution = 289 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . stage-out = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . log creation = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | ..............................
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6938192316/pilotlog.txt
[2025-12-20 12:49:39] 2025-12-20 20:48:45,085 | WARNING  | 
[2025-12-20 12:49:39] [begin log extracts]
[2025-12-20 12:49:39] - Log from pilotlog.txt -
[2025-12-20 12:49:39] 2025-12-20 20:48:44,990 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6938192316/memory_monitor_summary.json (trf name=prmon)
[2025-12-20 12:49:39] 2025-12-20 20:48:44,990 | INFO     | extracted standard info from prmon json
[2025-12-20 12:49:39] 2025-12-20 20:48:44,990 | INFO     | extracted standard memory fields from prmon json
[2025-12-20 12:49:39] 2025-12-20 20:48:44,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-20 12:49:39] 2025-12-20 20:48:44,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-20 12:49:39] 2025-12-20 20:48:44,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-20 12:49:39] 2025-12-20 20:48:44,992 | WARNING  | wrong length of table data, x=[1766263315.0, 1766263376.0, 1766263437.0, 1766263498.0, 1766263559.0], y=[935.0, 223420.0, 438966.0, 607320.0, 545149.0] (must be sa
[2025-12-20 12:49:39] 2025-12-20 20:48:44,992 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | ..............................
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . Timing measurements:
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . get job = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . initial setup = 5 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . payload setup = 16 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . stage-in = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . payload execution = 289 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . stage-out = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | . log creation = 0 s
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | ..............................
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-20 12:49:39] 2025-12-20 20:48:44,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6938192316/pilotlog.txt
[2025-12-20 12:49:39] [end log extracts]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,085 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-12-20 12:49:39] 2025-12-20 20:48:45,086 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-20 12:49:39] 2025-12-20 20:48:45,274 | INFO     | 
[2025-12-20 12:49:39] 2025-12-20 20:48:45,275 | INFO     | job summary report
[2025-12-20 12:49:39] 2025-12-20 20:48:45,275 | INFO     | --------------------------------------------------
[2025-12-20 12:49:39] 2025-12-20 20:48:45,275 | INFO     | PanDA job id: 6938192316
[2025-12-20 12:49:39] 2025-12-20 20:48:45,275 | INFO     | task id: 47961959
[2025-12-20 12:49:39] 2025-12-20 20:48:45,275 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-20 12:46:12,708 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-20 12:49:39] 2025-12-20 20:48:45,275 | INFO     | error 2/2: 1165: Local output file is missing
[2025-12-20 12:49:39] 2025-12-20 20:48:45,275 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | pilot state: failed 
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | transexitcode: 65
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | exeerrorcode: 65
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | exitcode: 65
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | cpuconsumptiontime: 53 s
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | nevents: 0
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | neventsw: 0
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | pid: 354020
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | pgrp: 354020
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | corecount: 12
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | event service: False
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | sizes: {0: 2284591, 11: 2284591, 14: 2284881, 22: 2284909, 311: 2310421, 313: 2314711, 317: 2314895, 455: 2315089}
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | --------------------------------------------------
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | 
[2025-12-20 12:49:39] 2025-12-20 20:48:45,276 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | job 6938192316 has completed (purged errors)
[2025-12-20 12:49:39] 2025-12-20 20:48:45,562 | INFO     | overall cleanup function is called
[2025-12-20 12:49:39] 2025-12-20 20:48:46,570 | INFO     | --- collectZombieJob: --- 10, [354020]
[2025-12-20 12:49:39] 2025-12-20 20:48:46,570 | INFO     | zombie collector waiting for pid 354020
[2025-12-20 12:49:39] 2025-12-20 20:48:46,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-20 12:49:39] 2025-12-20 20:48:46,571 | INFO     | collected zombie processes
[2025-12-20 12:49:39] 2025-12-20 20:48:46,571 | INFO     | will attempt to kill all subprocesses of pid=354020
[2025-12-20 12:49:39] 2025-12-20 20:48:46,881 | INFO     | process IDs to be killed: [354020] (in reverse order)
[2025-12-20 12:49:39] 2025-12-20 20:48:46,953 | WARNING  | found no corresponding commands to process id(s)
[2025-12-20 12:49:39] 2025-12-20 20:48:46,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-20 12:49:39] 2025-12-20 20:48:46,961 | INFO     | did not find any defunct processes belonging to 354020
[2025-12-20 12:49:39] 2025-12-20 20:48:46,967 | INFO     | did not find any defunct processes belonging to 354020
[2025-12-20 12:49:39] 2025-12-20 20:48:46,967 | INFO     | ready for new job
[2025-12-20 12:49:39] 2025-12-20 20:48:46,967 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-20 12:49:39] 2025-12-20 20:48:46,969 | INFO     | ***************************************
[2025-12-20 12:49:39] 2025-12-20 20:48:46,969 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-20 12:49:39] 2025-12-20 20:48:46,969 | INFO     | ***************************************
[2025-12-20 12:49:39] 2025-12-20 20:48:46,969 | INFO     | 
[2025-12-20 12:49:39] 2025-12-20 20:48:46,971 | INFO     | architecture information:
[2025-12-20 12:49:39] 2025-12-20 20:48:46,972 | INFO     | executing command: cat /etc/os-release
[2025-12-20 12:49:39] 2025-12-20 20:48:46,992 | INFO     | cat /etc/os-release:
[2025-12-20 12:49:39] NAME="CentOS Linux"
[2025-12-20 12:49:39] VERSION="7 (Core)"
[2025-12-20 12:49:39] ID="centos"
[2025-12-20 12:49:39] ID_LIKE="rhel fedora"
[2025-12-20 12:49:39] VERSION_ID="7"
[2025-12-20 12:49:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-20 12:49:39] ANSI_COLOR="0;31"
[2025-12-20 12:49:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-20 12:49:39] HOME_URL="https://www.centos.org/"
[2025-12-20 12:49:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-20 12:49:39] 
[2025-12-20 12:49:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-20 12:49:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-20 12:49:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-20 12:49:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-20 12:49:39] 
[2025-12-20 12:49:39] 2025-12-20 20:48:46,992 | INFO     | ***************************************
[2025-12-20 12:49:39] 2025-12-20 20:48:47,496 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-20 12:49:39] 2025-12-20 20:48:47,516 | INFO     | sufficient remaining disk space (2098398756864 B)
[2025-12-20 12:49:39] 2025-12-20 20:48:47,516 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-20 12:49:39] 2025-12-20 20:48:47,516 | INFO     | current server update state: UPDATING_FINAL
[2025-12-20 12:49:39] 2025-12-20 20:48:47,516 | INFO     | update_server=False
[2025-12-20 12:49:39] 2025-12-20 20:48:47,516 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-20 12:49:39] 2025-12-20 20:48:47,517 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-20 12:49:39] 2025-12-20 20:48:47,594 | INFO     | all job control threads have been joined
[2025-12-20 12:49:39] 2025-12-20 20:48:47,796 | INFO     | all payload control threads have been joined
[2025-12-20 12:49:39] 2025-12-20 20:48:47,843 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-20 12:49:39] 2025-12-20 20:48:47,844 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-20 12:49:39] 2025-12-20 20:48:47,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-20 12:49:39] 2025-12-20 20:48:47,844 | INFO     | will abort loop
[2025-12-20 12:49:39] 2025-12-20 20:48:47,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-20 12:49:39] 2025-12-20 20:48:48,093 | INFO     | all data control threads have been joined
[2025-12-20 12:49:39] 2025-12-20 20:48:48,517 | INFO     | [job] retrieve thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:48,556 | INFO     | [job] validate thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:48,602 | INFO     | [job] control thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:48,802 | INFO     | [payload] control thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:48,849 | INFO     | [job] job monitor thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:48,936 | INFO     | [payload] validate_post thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:49,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:49,099 | INFO     | [data] control thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:49,527 | INFO     | [data] copytool_out thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:49,577 | INFO     | [data] copytool_in thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:49,634 | INFO     | [payload] execute_payloads thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:49,676 | INFO     | [payload] failed_post thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:49,918 | INFO     | [job] create_data_payload thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:49,966 | INFO     | [payload] validate_pre thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:50,276 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-20 12:49:39] 2025-12-20 20:48:51,282 | INFO     | [job] queue monitor thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:48:51,946 | INFO     | [data] queue_monitor thread has finished
[2025-12-20 12:49:39] 2025-12-20 20:49:17,720 | INFO     | PID=347251 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-20 12:49:39] 2025-12-20 20:49:17,721 | INFO     | .. there are 20 such processes running
[2025-12-20 12:49:39] 2025-12-20 20:49:17,721 | INFO     | found 0 job(s) in 20 queues
[2025-12-20 12:49:39] 2025-12-20 20:49:17,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-20 12:49:39] 2025-12-20 20:49:17,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-20 12:49:39] 2025-12-20 20:49:32,511 | INFO     | [monitor] cgroup control has ended
[2025-12-20 12:49:39] 2025-12-20 20:49:33,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361258690368)>', '<ExcThread(monitor, started 140360185534208)>']
[2025-12-20 12:49:39] 2025-12-20 20:49:33,828 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-20 12:49:39] 2025-12-20 20:49:33,828 | INFO     | [monitor] control thread has ended
[2025-12-20 12:49:39] 2025-12-20 20:49:38,714 | INFO     | all workflow threads have been joined
[2025-12-20 12:49:39] 2025-12-20 20:49:38,715 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-20 12:49:39] 2025-12-20 20:49:38,716 | INFO     | traces error code: 0
[2025-12-20 12:49:39] 2025-12-20 20:49:38,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-20 12:49:39] 2025-12-20 20:49:38,838 [wrapper] ==== pilot stdout END ====
[2025-12-20 12:49:39] 2025-12-20 20:49:38,857 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-20 12:49:39] 2025-12-20 20:49:38,886 [wrapper] pilotpid: 347251
[2025-12-20 12:49:39] 2025-12-20 20:49:38,939 [wrapper] Pilot exit status: 0
[2025-12-20 12:49:39] 2025-12-20 20:49:39,084 [wrapper] pandaids: 6938192316
[2025-12-20 12:49:39] 2025-12-20 20:49:39,394 [wrapper] cleanup supervisor_pilot  347257 347252
[2025-12-20 12:49:39] 2025-12-20 20:49:39,400 [wrapper] Test setup, not cleaning
[2025-12-20 12:49:39] 2025-12-20 20:49:39,403 [wrapper] apfmon messages muted
[2025-12-20 12:49:39] 2025-12-20 20:49:39,405 [wrapper] ==== wrapper stdout END ====
[2025-12-20 12:49:39] 2025-12-20 20:49:39,407 [wrapper] ==== wrapper stderr END ====
[2025-12-20 12:49:39]  *** Error codes and diagnostics ***
[2025-12-20 12:49:39]     "exeErrorCode": 65,
[2025-12-20 12:49:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-12-20 12:49:39]     "pilotErrorCode": 1305,
[2025-12-20 12:49:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-12-20 12:49:39]  *** Listing of results directory ***
[2025-12-20 12:49:39] total 411696
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc    579449 Dec 19 21:05 pilot3.tar.gz
[2025-12-20 12:49:39] -rwx------. 1 boinc boinc     36322 Dec 19 21:07 runpilot2-wrapper.sh
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc      5112 Dec 19 21:09 queuedata.json
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc       100 Dec 20 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-20 12:49:39] -rwxr-xr-x. 1 boinc boinc      7986 Dec 20 12:39 run_atlas
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc       105 Dec 20 12:39 job.xml
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc      6592 Dec 20 12:39 init_data.xml
[2025-12-20 12:49:39] -rw-r--r--. 2 boinc boinc 417310939 Dec 20 12:39 EVNT.47961955._000001.pool.root.1
[2025-12-20 12:49:39] -rw-r--r--. 2 boinc boinc     15847 Dec 20 12:39 start_atlas.sh
[2025-12-20 12:49:39] drwxrwx--x. 2 boinc boinc      4096 Dec 20 12:39 shared
[2025-12-20 12:49:39] -rw-r--r--. 2 boinc boinc    592589 Dec 20 12:39 input.tar.gz
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc         0 Dec 20 12:39 boinc_lockfile
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc      2874 Dec 20 12:39 pandaJob.out
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc    988154 Dec 20 12:40 agis_schedconf.cvmfs.json
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc   1516240 Dec 20 12:40 agis_ddmendpoints.agis.ALL.json
[2025-12-20 12:49:39] drwx------. 5 boinc boinc      4096 Dec 20 12:40 pilot3
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc       525 Dec 20 12:45 boinc_task_state.xml
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc       997 Dec 20 12:46 memory_monitor_summary.json
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc     52290 Dec 20 12:46 log.47961959._000002.job.log.tgz.1
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc        95 Dec 20 12:48 pilot_heartbeat.json
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc     10335 Dec 20 12:48 heartbeat.json
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc      8192 Dec 20 12:49 boinc_mmap_file
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc        23 Dec 20 12:49 wrapper_checkpoint.txt
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc      5008 Dec 20 12:49 pilotlog.txt
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc    125174 Dec 20 12:49 log.47961959._000002.job.log.1
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc       186 Dec 20 12:49 output.list
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc       620 Dec 20 12:49 runtime_log
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc    194560 Dec 20 12:49 result.tar.gz
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc      8636 Dec 20 12:49 runtime_log.err
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc       644 Dec 20 12:49 ePiNDmbM4q8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMgcKDmfdEgJo.diag
[2025-12-20 12:49:39] -rw-r--r--. 1 boinc boinc     22546 Dec 20 12:49 stderr.txt
[2025-12-20 12:49:39] No HITS result produced
[2025-12-20 12:49:39]  *** Contents of shared directory: ***
[2025-12-20 12:49:39] total 408324
[2025-12-20 12:49:39] -rw-r--r--. 2 boinc boinc 417310939 Dec 20 12:39 ATLAS.root_0
[2025-12-20 12:49:39] -rw-r--r--. 2 boinc boinc     15847 Dec 20 12:39 start_atlas.sh
[2025-12-20 12:49:39] -rw-r--r--. 2 boinc boinc    592589 Dec 20 12:39 input.tar.gz
[2025-12-20 12:49:39] -rw-------. 1 boinc boinc    194560 Dec 20 12:49 result.tar.gz
12:49:40 (343410): run_atlas exited; CPU time 61.585328
12:49:40 (343410): called boinc_finish(0)

</stderr_txt>
]]>

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