Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
17:38:31 (702969): wrapper (7.7.26015): starting
17:38:31 (702969): wrapper: running run_atlas (--nthreads 12)
[2025-12-25 17:38:31] Arguments: --nthreads 12
[2025-12-25 17:38:31] Threads: 12
[2025-12-25 17:38:31] Checking for CVMFS
[2025-12-25 17:38:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-25 17:38:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-25 17:38:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-25 17:38:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-25 17:38:31] 2.13.3.0 3561 189 66528 154424 3 228 3114568 4096001 8616 130560 0 27400414 100.000 8194 331 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-25 17:38:31] CVMFS is ok
[2025-12-25 17:38:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-25 17:38:31] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-25 17:38:31] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-25 17:38:31] Further information can be found at the LHC@home message board.
[2025-12-25 17:38:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-25 17:38:31] Checking for apptainer binary...
[2025-12-25 17:38:31] apptainer is not installed, using version from CVMFS
[2025-12-25 17:38:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-25 17:38:31] 7950x-linux
[2025-12-25 17:38:31] apptainer works
[2025-12-25 17:38:31] Set ATHENA_PROC_NUMBER=12
[2025-12-25 17:38:31] Set ATHENA_CORE_NUMBER=12
[2025-12-25 17:38:32] Starting ATLAS job with PandaID=6935961632
[2025-12-25 17:38:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc149/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-25 20:46:30]  *** The last 200 lines of the pilot log: ***
[2025-12-25 20:46:30] 2025-12-26 04:45:54,341 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-25 20:46:30] 2025-12-26 04:45:54,696 | INFO     | time since job start (11230s) is within the limit (174528.0s)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,701 | INFO     | time since job start (11232s) is within the limit (174528.0s)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,843 | INFO     | monitor loop #822: job 0:6935961632 is in state 'finished'
[2025-12-25 20:46:30] 2025-12-26 04:45:56,843 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,960 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-25 20:46:30] 2025-12-26 04:45:56,963 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.0414375000005
[2025-12-25 20:46:30] 2025-12-26 04:45:56,966 | INFO     | using path: /var/lib/multiboinc/boinc149/slots/0/PanDA_Pilot-6935961632/memory_monitor_summary.json (trf name=prmon)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,967 | INFO     | extracted standard info from prmon json
[2025-12-25 20:46:30] 2025-12-26 04:45:56,967 | INFO     | extracted standard memory fields from prmon json
[2025-12-25 20:46:30] 2025-12-26 04:45:56,967 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-25 20:46:30] 2025-12-26 04:45:56,967 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-25 20:46:30] 2025-12-26 04:45:56,967 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-25 20:46:30] 2025-12-26 04:45:56,969 | INFO     | fitting pss+swap vs Time
[2025-12-25 20:46:30] 2025-12-26 04:45:56,969 | INFO     | sum of square deviations: 1931608310.0
[2025-12-25 20:46:30] 2025-12-26 04:45:56,970 | INFO     | sum of deviations: 25343744694.499996
[2025-12-25 20:46:30] 2025-12-26 04:45:56,970 | INFO     | mean x: 1766718731.5
[2025-12-25 20:46:30] 2025-12-26 04:45:56,970 | INFO     | mean y: 2673469.2445652173
[2025-12-25 20:46:30] 2025-12-26 04:45:56,970 | INFO     | intersect: -23177630863.846077
[2025-12-25 20:46:30] 2025-12-26 04:45:56,970 | INFO     | chi2: 1.2205208126934801
[2025-12-25 20:46:30] 2025-12-26 04:45:56,970 | INFO     | sum of square deviations: 1778377530.0
[2025-12-25 20:46:30] 2025-12-26 04:45:56,971 | INFO     | sum of deviations: 24619094981.000004
[2025-12-25 20:46:30] 2025-12-26 04:45:56,971 | INFO     | mean x: 1766718579.0
[2025-12-25 20:46:30] 2025-12-26 04:45:56,971 | INFO     | mean y: 2672747.8882681564
[2025-12-25 20:46:30] 2025-12-26 04:45:56,971 | INFO     | intersect: -24455020721.224762
[2025-12-25 20:46:30] 2025-12-26 04:45:56,971 | INFO     | chi2: 1.2211707635770996
[2025-12-25 20:46:30] 2025-12-26 04:45:56,971 | INFO     | current chi2=1.2211707635770996 (change=-0.05325192957465354 %)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,971 | INFO     | right removable region: 178
[2025-12-25 20:46:30] 2025-12-26 04:45:56,971 | INFO     | sum of square deviations: 1778377530.0
[2025-12-25 20:46:30] 2025-12-26 04:45:56,972 | INFO     | sum of deviations: -895699599.9999999
[2025-12-25 20:46:30] 2025-12-26 04:45:56,972 | INFO     | mean x: 1766718884.0
[2025-12-25 20:46:30] 2025-12-26 04:45:56,972 | INFO     | mean y: 2699245.910614525
[2025-12-25 20:46:30] 2025-12-26 04:45:56,972 | INFO     | intersect: 892526839.3301322
[2025-12-25 20:46:30] 2025-12-26 04:45:56,972 | INFO     | chi2: 0.0035582639752688478
[2025-12-25 20:46:30] 2025-12-26 04:45:56,972 | INFO     | current chi2=0.0035582639752688478 (change=99.70846347409542 %)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,972 | INFO     | sum of square deviations: 1633472487.5
[2025-12-25 20:46:30] 2025-12-26 04:45:56,973 | INFO     | sum of deviations: -1437502789.4999998
[2025-12-25 20:46:30] 2025-12-26 04:45:56,973 | INFO     | mean x: 1766719036.5
[2025-12-25 20:46:30] 2025-12-26 04:45:56,973 | INFO     | mean y: 2699808.7413793104
[2025-12-25 20:46:30] 2025-12-26 04:45:56,973 | INFO     | intersect: 1557463395.3129601
[2025-12-25 20:46:30] 2025-12-26 04:45:56,973 | INFO     | chi2: 0.0029528934697044444
[2025-12-25 20:46:30] 2025-12-26 04:45:56,973 | INFO     | current chi2=0.0029528934697044444 (change=17.01308586917484 %)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,973 | INFO     | left removable region: 20
[2025-12-25 20:46:30] 2025-12-26 04:45:56,973 | INFO     | sum of square deviations: 1223016419.5
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | sum of deviations: -977631871.9999995
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | mean x: 1766719158.5
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | mean y: 2699269.8860759493
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | intersect: 1414946015.4602213
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | chi2: 0.0028632060923738387
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | current memory leak: -0.80 B/s (using 158 data points, chi2=0.00)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | could have reported an average CPU frequency of 4000 MHz (10 samples)
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | ..............................
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | . Timing measurements:
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | . get job = 0 s
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | . initial setup = 3 s
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | . payload setup = 5 s
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | . stage-in = 0 s
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | . payload execution = 11193 s
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | . stage-out = 2 s
[2025-12-25 20:46:30] 2025-12-26 04:45:56,974 | INFO     | . log creation = 0 s
[2025-12-25 20:46:30] 2025-12-26 04:45:56,975 | INFO     | ..............................
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | 
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | job summary report
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | --------------------------------------------------
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | PanDA job id: 6935961632
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | task id: 47929280
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | errors: (none)
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | pilot state: finished 
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | transexitcode: 0
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | exeerrorcode: 0
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | exeerrordiag: 
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | exitcode: 0
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | exitmsg: OK
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | cpuconsumptiontime: 23196 s
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | nevents: 400
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | neventsw: 0
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | pid: 713470
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | pgrp: 713470
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | corecount: 12
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | event service: False
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | sizes: {0: 2283827, 1: 2284026, 5: 2284288, 11: 2284344, 11202: 2313665, 11205: 2322691, 11206: 2322875, 11217: 2323069}
[2025-12-25 20:46:30] 2025-12-26 04:45:57,095 | INFO     | --------------------------------------------------
[2025-12-25 20:46:30] 2025-12-26 04:45:57,096 | INFO     | 
[2025-12-25 20:46:30] 2025-12-26 04:45:57,096 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc149/slots/0
[2025-12-25 20:46:30] 2025-12-26 04:45:57,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | job 6935961632 has completed (purged errors)
[2025-12-25 20:46:30] 2025-12-26 04:45:57,128 | INFO     | overall cleanup function is called
[2025-12-25 20:46:30] 2025-12-26 04:45:58,047 | INFO     | PID=706810 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-25 20:46:30] 2025-12-26 04:45:58,047 | INFO     | .. there are 16 such processes running
[2025-12-25 20:46:30] 2025-12-26 04:45:58,135 | INFO     | --- collectZombieJob: --- 10, [713470]
[2025-12-25 20:46:30] 2025-12-26 04:45:58,135 | INFO     | zombie collector waiting for pid 713470
[2025-12-25 20:46:30] 2025-12-26 04:45:58,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-25 20:46:30] 2025-12-26 04:45:58,135 | INFO     | collected zombie processes
[2025-12-25 20:46:30] 2025-12-26 04:45:58,135 | INFO     | will attempt to kill all subprocesses of pid=713470
[2025-12-25 20:46:30] 2025-12-26 04:45:58,483 | INFO     | process IDs to be killed: [713470] (in reverse order)
[2025-12-25 20:46:30] 2025-12-26 04:45:58,609 | WARNING  | found no corresponding commands to process id(s)
[2025-12-25 20:46:30] 2025-12-26 04:45:58,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-25 20:46:30] 2025-12-26 04:45:58,614 | INFO     | did not find any defunct processes belonging to 713470
[2025-12-25 20:46:30] 2025-12-26 04:45:58,619 | INFO     | did not find any defunct processes belonging to 713470
[2025-12-25 20:46:30] 2025-12-26 04:45:58,619 | INFO     | ready for new job
[2025-12-25 20:46:30] 2025-12-26 04:45:58,619 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-25 20:46:30] 2025-12-26 04:45:58,620 | INFO     | ***************************************
[2025-12-25 20:46:30] 2025-12-26 04:45:58,620 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-25 20:46:30] 2025-12-26 04:45:58,620 | INFO     | ***************************************
[2025-12-25 20:46:30] 2025-12-26 04:45:58,620 | INFO     | 
[2025-12-25 20:46:30] 2025-12-26 04:45:58,621 | INFO     | architecture information:
[2025-12-25 20:46:30] 2025-12-26 04:45:58,622 | INFO     | executing command: cat /etc/os-release
[2025-12-25 20:46:30] 2025-12-26 04:45:58,635 | INFO     | cat /etc/os-release:
[2025-12-25 20:46:30] NAME="CentOS Linux"
[2025-12-25 20:46:30] VERSION="7 (Core)"
[2025-12-25 20:46:30] ID="centos"
[2025-12-25 20:46:30] ID_LIKE="rhel fedora"
[2025-12-25 20:46:30] VERSION_ID="7"
[2025-12-25 20:46:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-25 20:46:30] ANSI_COLOR="0;31"
[2025-12-25 20:46:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-25 20:46:30] HOME_URL="https://www.centos.org/"
[2025-12-25 20:46:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-25 20:46:30] 
[2025-12-25 20:46:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-25 20:46:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-25 20:46:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-25 20:46:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-25 20:46:30] 
[2025-12-25 20:46:30] 2025-12-26 04:45:58,636 | INFO     | ***************************************
[2025-12-25 20:46:30] 2025-12-26 04:45:59,138 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc149/slots/0
[2025-12-25 20:46:30] 2025-12-26 04:45:59,176 | INFO     | sufficient remaining disk space (128614137856 B)
[2025-12-25 20:46:30] 2025-12-26 04:45:59,177 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-25 20:46:30] 2025-12-26 04:45:59,177 | INFO     | current server update state: UPDATING_FINAL
[2025-12-25 20:46:30] 2025-12-26 04:45:59,177 | INFO     | update_server=False
[2025-12-25 20:46:30] 2025-12-26 04:45:59,177 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-25 20:46:30] 2025-12-26 04:45:59,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-25 20:46:30] 2025-12-26 04:45:59,245 | INFO     | all payload control threads have been joined
[2025-12-25 20:46:30] 2025-12-26 04:45:59,246 | INFO     | all data control threads have been joined
[2025-12-25 20:46:30] 2025-12-26 04:45:59,349 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-25 20:46:30] 2025-12-26 04:45:59,349 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-25 20:46:30] 2025-12-26 04:45:59,349 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-25 20:46:30] 2025-12-26 04:45:59,349 | INFO     | will abort loop
[2025-12-25 20:46:30] 2025-12-26 04:46:00,182 | INFO     | [job] retrieve thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:00,250 | INFO     | [payload] control thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:00,251 | INFO     | [data] control thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:00,265 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:00,354 | INFO     | [job] job monitor thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:00,419 | INFO     | all job control threads have been joined
[2025-12-25 20:46:30] 2025-12-26 04:46:01,189 | INFO     | [data] copytool_out thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:01,216 | INFO     | [job] create_data_payload thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:01,254 | INFO     | [payload] validate_post thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:01,264 | INFO     | [job] validate thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:01,362 | INFO     | [payload] validate_pre thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:01,382 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-25 20:46:30] 2025-12-26 04:46:01,424 | INFO     | [job] control thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:01,445 | INFO     | [data] copytool_in thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:01,445 | INFO     | [payload] execute_payloads thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:01,651 | INFO     | [payload] failed_post thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:02,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-25 20:46:30] 2025-12-26 04:46:02,446 | INFO     | [monitor] cgroup control has ended
[2025-12-25 20:46:30] 2025-12-26 04:46:03,055 | INFO     | [job] queue monitor thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:05,388 | INFO     | [data] queue_monitor thread has finished
[2025-12-25 20:46:30] 2025-12-26 04:46:05,939 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133272187885376)>', '<ExcThread(monitor, started 133271400728320)>']
[2025-12-25 20:46:30] 2025-12-26 04:46:10,964 | INFO     | all workflow threads have been joined
[2025-12-25 20:46:30] 2025-12-26 04:46:10,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-25 20:46:30] 2025-12-26 04:46:10,964 | INFO     | traces error code: 0
[2025-12-25 20:46:30] 2025-12-26 04:46:10,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-25 20:46:30] 2025-12-26 04:46:30,573 | INFO     | PID=706810 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-25 20:46:30] 2025-12-26 04:46:30,574 | INFO     | .. there are 16 such processes running
[2025-12-25 20:46:30] 2025-12-26 04:46:30,574 | INFO     | found 0 job(s) in 20 queues
[2025-12-25 20:46:30] 2025-12-26 04:46:30,574 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-25 20:46:30] 2025-12-26 04:46:30,574 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-25 20:46:30] 2025-12-26 04:46:30,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-25 20:46:30] 2025-12-26 04:46:30,574 | INFO     | [monitor] control thread has ended
[2025-12-25 20:46:30] 2025-12-26 04:46:30,704 [wrapper] ==== pilot stdout END ====
[2025-12-25 20:46:30] 2025-12-26 04:46:30,705 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-25 20:46:30] 2025-12-26 04:46:30,707 [wrapper] pilotpid: 706810
[2025-12-25 20:46:30] 2025-12-26 04:46:30,708 [wrapper] Pilot exit status: 0
[2025-12-25 20:46:30] 2025-12-26 04:46:30,732 [wrapper] pandaids: 6935961632
[2025-12-25 20:46:30] 2025-12-26 04:46:30,781 [wrapper] cleanup supervisor_pilot 1114151 706811
[2025-12-25 20:46:30] 2025-12-26 04:46:30,783 [wrapper] Test setup, not cleaning
[2025-12-25 20:46:30] 2025-12-26 04:46:30,784 [wrapper] apfmon messages muted
[2025-12-25 20:46:30] 2025-12-26 04:46:30,786 [wrapper] ==== wrapper stdout END ====
[2025-12-25 20:46:30] 2025-12-26 04:46:30,787 [wrapper] ==== wrapper stderr END ====
[2025-12-25 20:46:30]  *** Error codes and diagnostics ***
[2025-12-25 20:46:30]     "exeErrorCode": 0,
[2025-12-25 20:46:30]     "exeErrorDiag": "",
[2025-12-25 20:46:30]     "pilotErrorCode": 0,
[2025-12-25 20:46:30]     "pilotErrorDiag": "",
[2025-12-25 20:46:30]  *** Listing of results directory ***
[2025-12-25 20:46:30] total 437396
[2025-12-25 20:46:30] -rw-r--r-- 1 root root    579449 Dec 19 11:58 pilot3.tar.gz
[2025-12-25 20:46:30] -rwx------ 1 4871 1028     36322 Dec 19 12:00 runpilot2-wrapper.sh
[2025-12-25 20:46:30] -rw-r--r-- 1 root root      5112 Dec 19 12:01 queuedata.json
[2025-12-25 20:46:30] -rw-r--r-- 1 root root       100 Dec 25 17:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-25 20:46:30] -rwxr-xr-x 1 root root      7986 Dec 25 17:38 run_atlas
[2025-12-25 20:46:30] -rw-r--r-- 1 root root       105 Dec 25 17:38 job.xml
[2025-12-25 20:46:30] -rw-r--r-- 1 root root      7049 Dec 25 17:38 init_data.xml
[2025-12-25 20:46:30] -rw-r--r-- 2 root root 254058959 Dec 25 17:38 EVNT.47929278._000190.pool.root.1
[2025-12-25 20:46:30] -rw-r--r-- 2 root root     15847 Dec 25 17:38 start_atlas.sh
[2025-12-25 20:46:30] drwxrwx--x 2 root root      4096 Dec 25 17:38 shared
[2025-12-25 20:46:30] -rw-r--r-- 2 root root    592418 Dec 25 17:38 input.tar.gz
[2025-12-25 20:46:30] -rw-r--r-- 1 root root         0 Dec 25 17:38 boinc_lockfile
[2025-12-25 20:46:30] -rw-r--r-- 1 root root      2566 Dec 25 17:38 pandaJob.out
[2025-12-25 20:46:30] -rw------- 1 root root    989280 Dec 25 17:38 agis_schedconf.cvmfs.json
[2025-12-25 20:46:30] drwxr-xr-x 5  320  320      4096 Dec 25 17:38 pilot3
[2025-12-25 20:46:30] -rw-r--r-- 1 root root       531 Dec 25 20:45 boinc_task_state.xml
[2025-12-25 20:46:30] -rw------- 1 root root 185721755 Dec 25 20:45 HITS.47929280._004470.pool.root.1
[2025-12-25 20:46:30] -rw------- 1 root root      1020 Dec 25 20:45 memory_monitor_summary.json
[2025-12-25 20:46:30] -rw------- 1 root root   1516240 Dec 25 20:45 agis_ddmendpoints.agis.ALL.json
[2025-12-25 20:46:30] -rw------- 1 root root    490540 Dec 25 20:45 log.47929280._004470.job.log.tgz.1
[2025-12-25 20:46:30] -rw------- 1 root root      7742 Dec 25 20:45 heartbeat.json
[2025-12-25 20:46:30] -rw-r--r-- 1 root root        28 Dec 25 20:46 wrapper_checkpoint.txt
[2025-12-25 20:46:30] -rw-r--r-- 1 root root      8192 Dec 25 20:46 boinc_mmap_file
[2025-12-25 20:46:30] -rw------- 1 root root       822 Dec 25 20:46 pilotlog.txt
[2025-12-25 20:46:30] -rw------- 1 root root        95 Dec 25 20:46 pilot_heartbeat.json
[2025-12-25 20:46:30] -rw------- 1 root root   1609430 Dec 25 20:46 log.47929280._004470.job.log.1
[2025-12-25 20:46:30] -rw------- 1 root root       357 Dec 25 20:46 output.list
[2025-12-25 20:46:30] -rw-r--r-- 1 root root       620 Dec 25 20:46 runtime_log
[2025-12-25 20:46:30] -rw------- 1 root root   2119680 Dec 25 20:46 result.tar.gz
[2025-12-25 20:46:30] -rw------- 1 root root       652 Dec 25 20:46 wPGNDmFpvq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmElgKDmaep6Ro.diag
[2025-12-25 20:46:30] -rw-r--r-- 1 root root      9021 Dec 25 20:46 runtime_log.err
[2025-12-25 20:46:30] -rw-r--r-- 1 root root     21555 Dec 25 20:46 stderr.txt
[2025-12-25 20:46:30] HITS file was successfully produced:
[2025-12-25 20:46:30] -rw------- 1 root root 185721755 Dec 25 20:45 shared/HITS.pool.root.1
[2025-12-25 20:46:30]  *** Contents of shared directory: ***
[2025-12-25 20:46:30] total 432156
[2025-12-25 20:46:30] -rw-r--r-- 2 root root 254058959 Dec 25 17:38 ATLAS.root_0
[2025-12-25 20:46:30] -rw-r--r-- 2 root root     15847 Dec 25 17:38 start_atlas.sh
[2025-12-25 20:46:30] -rw-r--r-- 2 root root    592418 Dec 25 17:38 input.tar.gz
[2025-12-25 20:46:30] -rw------- 1 root root 185721755 Dec 25 20:45 HITS.pool.root.1
[2025-12-25 20:46:30] -rw------- 1 root root   2119680 Dec 25 20:46 result.tar.gz
20:46:32 (702969): run_atlas exited; CPU time 23384.414723
20:46:32 (702969): called boinc_finish(0)

</stderr_txt>
]]>

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