Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
17:49:31 (759778): wrapper (7.7.26015): starting
17:49:31 (759778): wrapper: running run_atlas (--nthreads 12)
[2025-12-25 17:49:31] Arguments: --nthreads 12
[2025-12-25 17:49:31] Threads: 12
[2025-12-25 17:49:31] Checking for CVMFS
[2025-12-25 17:49:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-25 17:49:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-25 17:49:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-25 17:49:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-25 17:49:32] 2.13.3.0 3561 200 66608 154424 0 228 3114568 4096001 10441 130560 0 28584982 100.000 8195 327 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-25 17:49:32] CVMFS is ok
[2025-12-25 17:49:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-25 17:49:32] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-25 17:49:32] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-25 17:49:32] Further information can be found at the LHC@home message board.
[2025-12-25 17:49:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-25 17:49:32] Checking for apptainer binary...
[2025-12-25 17:49:32] apptainer is not installed, using version from CVMFS
[2025-12-25 17:49:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-25 17:49:32] 7950x-linux
[2025-12-25 17:49:32] apptainer works
[2025-12-25 17:49:32] Set ATHENA_PROC_NUMBER=12
[2025-12-25 17:49:32] Set ATHENA_CORE_NUMBER=12
[2025-12-25 17:49:32] Starting ATLAS job with PandaID=6937249551
[2025-12-25 17:49:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc149/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-26 19:01:31]  *** The last 200 lines of the pilot log: ***
[2025-12-26 19:01:31] 2025-12-27 03:00:51,577 | INFO     | monitor loop #6551: job 0:6937249551 is in state 'finished'
[2025-12-26 19:01:31] 2025-12-27 03:00:51,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-26 19:01:31] 2025-12-27 03:00:52,007 | INFO     | job 6937249551 has state=finished
[2025-12-26 19:01:31] 2025-12-27 03:00:52,007 | INFO     | preparing for final server update for job 6937249551 in state='finished'
[2025-12-26 19:01:31] 2025-12-27 03:00:52,007 | INFO     | this job has now completed (state=finished)
[2025-12-26 19:01:31] 2025-12-27 03:00:52,007 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-26 19:01:31] 2025-12-27 03:00:52,007 | INFO     | log transfer has been attempted: DONE
[2025-12-26 19:01:31] 2025-12-27 03:00:52,007 | INFO     | job 6937249551 has finished - writing final server update
[2025-12-26 19:01:31] 2025-12-27 03:00:52,007 | INFO     | total number of processed events: 1000 (read)
[2025-12-26 19:01:31] 2025-12-27 03:00:52,008 | INFO     | executing command: lscpu
[2025-12-26 19:01:31] 2025-12-27 03:00:52,065 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-26 19:01:31] 2025-12-27 03:00:53,224 | INFO     | time since job start (90667s) is within the limit (174528.0s)
[2025-12-26 19:01:31] 2025-12-27 03:00:54,080 | INFO     | monitor loop #6552: job 0:6937249551 is in state 'finished'
[2025-12-26 19:01:31] 2025-12-27 03:00:54,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-26 19:01:31] 2025-12-27 03:00:55,229 | INFO     | time since job start (90669s) is within the limit (174528.0s)
[2025-12-26 19:01:31] 2025-12-27 03:00:56,583 | INFO     | monitor loop #6553: job 0:6937249551 is in state 'finished'
[2025-12-26 19:01:31] 2025-12-27 03:00:56,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,234 | INFO     | time since job start (90671s) is within the limit (174528.0s)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,374 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-26 19:01:31] 2025-12-27 03:00:57,377 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.0403749999996
[2025-12-26 19:01:31] 2025-12-27 03:00:57,381 | INFO     | using path: /var/lib/multiboinc/boinc149/slots/2/PanDA_Pilot-6937249551/memory_monitor_summary.json (trf name=prmon)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,382 | INFO     | extracted standard info from prmon json
[2025-12-26 19:01:31] 2025-12-27 03:00:57,382 | INFO     | extracted standard memory fields from prmon json
[2025-12-26 19:01:31] 2025-12-27 03:00:57,382 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-26 19:01:31] 2025-12-27 03:00:57,393 | INFO     | fitting pss+swap vs Time
[2025-12-26 19:01:31] 2025-12-27 03:00:57,394 | INFO     | sum of square deviations: 1017500556847.5
[2025-12-26 19:01:31] 2025-12-27 03:00:57,417 | INFO     | sum of deviations: 65192285936102.54
[2025-12-26 19:01:31] 2025-12-27 03:00:57,422 | INFO     | mean x: 1766759106.5
[2025-12-26 19:01:31] 2025-12-27 03:00:57,422 | INFO     | mean y: 4488452.634589502
[2025-12-26 19:01:31] 2025-12-27 03:00:57,422 | INFO     | intersect: -113193547731.26476
[2025-12-26 19:01:31] 2025-12-27 03:00:57,423 | INFO     | chi2: 275.1011356782514
[2025-12-26 19:01:31] 2025-12-27 03:00:57,423 | INFO     | sum of square deviations: 1007264206780.0
[2025-12-26 19:01:31] 2025-12-27 03:00:57,448 | INFO     | sum of deviations: 65756424775833.02
[2025-12-26 19:01:31] 2025-12-27 03:00:57,449 | INFO     | mean x: 1766758954.0
[2025-12-26 19:01:31] 2025-12-27 03:00:57,449 | INFO     | mean y: 4496848.49966239
[2025-12-26 19:01:31] 2025-12-27 03:00:57,449 | INFO     | intersect: -115333416951.81151
[2025-12-26 19:01:31] 2025-12-27 03:00:57,450 | INFO     | chi2: 277.03875619021045
[2025-12-26 19:01:31] 2025-12-27 03:00:57,450 | INFO     | current chi2=277.03875619021045 (change=-0.7043302482855659 %)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,450 | INFO     | right removable region: 1480
[2025-12-26 19:01:31] 2025-12-27 03:00:57,450 | INFO     | sum of square deviations: 1007264206780.0
[2025-12-26 19:01:31] 2025-12-27 03:00:57,474 | INFO     | sum of deviations: 64522953214484.99
[2025-12-26 19:01:31] 2025-12-27 03:00:57,474 | INFO     | mean x: 1766759259.0
[2025-12-26 19:01:31] 2025-12-27 03:00:57,474 | INFO     | mean y: 4498417.705604321
[2025-12-26 19:01:31] 2025-12-27 03:00:57,474 | INFO     | intersect: -113169904328.25987
[2025-12-26 19:01:31] 2025-12-27 03:00:57,475 | INFO     | chi2: 272.7576241090451
[2025-12-26 19:01:31] 2025-12-27 03:00:57,475 | INFO     | current chi2=272.7576241090451 (change=0.8518727352500705 %)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,475 | INFO     | left removable region: 10
[2025-12-26 19:01:31] 2025-12-27 03:00:57,476 | INFO     | sum of square deviations: 984986384427.5
[2025-12-26 19:01:31] 2025-12-27 03:00:57,502 | INFO     | sum of deviations: 64626996038267.03
[2025-12-26 19:01:31] 2025-12-27 03:00:57,502 | INFO     | mean x: 1766759228.5
[2025-12-26 19:01:31] 2025-12-27 03:00:57,503 | INFO     | mean y: 4511477.104761905
[2025-12-26 19:01:31] 2025-12-27 03:00:57,503 | INFO     | intersect: -115916219475.1366
[2025-12-26 19:01:31] 2025-12-27 03:00:57,503 | INFO     | chi2: 275.2915725366403
[2025-12-26 19:01:31] 2025-12-27 03:00:57,503 | INFO     | current memory leak: 65.61 B/s (using 1470 data points, chi2=275.29)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,504 | INFO     | could have reported an average CPU frequency of 4000 MHz (53 samples)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,504 | INFO     | ..............................
[2025-12-26 19:01:31] 2025-12-27 03:00:57,504 | INFO     | . Timing measurements:
[2025-12-26 19:01:31] 2025-12-27 03:00:57,504 | INFO     | . get job = 0 s
[2025-12-26 19:01:31] 2025-12-27 03:00:57,504 | INFO     | . initial setup = 3 s
[2025-12-26 19:01:31] 2025-12-27 03:00:57,504 | INFO     | . payload setup = 6 s
[2025-12-26 19:01:31] 2025-12-27 03:00:57,505 | INFO     | . stage-in = 0 s
[2025-12-26 19:01:31] 2025-12-27 03:00:57,505 | INFO     | . payload execution = 90630 s
[2025-12-26 19:01:31] 2025-12-27 03:00:57,505 | INFO     | . stage-out = 3 s
[2025-12-26 19:01:31] 2025-12-27 03:00:57,505 | INFO     | . log creation = 0 s
[2025-12-26 19:01:31] 2025-12-27 03:00:57,505 | INFO     | ..............................
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | 
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | job summary report
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | --------------------------------------------------
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | PanDA job id: 6937249551
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | task id: 47960988
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | errors: (none)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | pilot state: finished 
[2025-12-26 19:01:31] 2025-12-27 03:00:57,723 | INFO     | transexitcode: 0
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | exeerrorcode: 0
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | exeerrordiag: 
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | exitcode: 0
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | exitmsg: OK
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | cpuconsumptiontime: 177748 s
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | nevents: 1000
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | neventsw: 0
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | pid: 770294
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | pgrp: 770294
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | corecount: 12
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | event service: False
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | sizes: {0: 2284614, 5: 2284876, 11: 2284932, 90640: 2351039, 90646: 2360061, 90647: 2360117, 90655: 2360587}
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | --------------------------------------------------
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | 
[2025-12-26 19:01:31] 2025-12-27 03:00:57,724 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc149/slots/2
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | job 6937249551 has completed (purged errors)
[2025-12-26 19:01:31] 2025-12-27 03:00:57,772 | INFO     | overall cleanup function is called
[2025-12-26 19:01:31] 2025-12-27 03:00:58,800 | INFO     | --- collectZombieJob: --- 10, [770294]
[2025-12-26 19:01:31] 2025-12-27 03:00:58,800 | INFO     | zombie collector waiting for pid 770294
[2025-12-26 19:01:31] 2025-12-27 03:00:58,800 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-26 19:01:31] 2025-12-27 03:00:58,800 | INFO     | collected zombie processes
[2025-12-26 19:01:31] 2025-12-27 03:00:58,800 | INFO     | will attempt to kill all subprocesses of pid=770294
[2025-12-26 19:01:31] 2025-12-27 03:00:59,121 | INFO     | process IDs to be killed: [770294] (in reverse order)
[2025-12-26 19:01:31] 2025-12-27 03:00:59,253 | WARNING  | found no corresponding commands to process id(s)
[2025-12-26 19:01:31] 2025-12-27 03:00:59,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-26 19:01:31] 2025-12-27 03:00:59,261 | INFO     | did not find any defunct processes belonging to 770294
[2025-12-26 19:01:31] 2025-12-27 03:00:59,266 | INFO     | did not find any defunct processes belonging to 770294
[2025-12-26 19:01:31] 2025-12-27 03:00:59,266 | INFO     | ready for new job
[2025-12-26 19:01:31] 2025-12-27 03:00:59,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-26 19:01:31] 2025-12-27 03:00:59,270 | INFO     | ***************************************
[2025-12-26 19:01:31] 2025-12-27 03:00:59,270 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-26 19:01:31] 2025-12-27 03:00:59,270 | INFO     | ***************************************
[2025-12-26 19:01:31] 2025-12-27 03:00:59,270 | INFO     | 
[2025-12-26 19:01:31] 2025-12-27 03:00:59,274 | INFO     | architecture information:
[2025-12-26 19:01:31] 2025-12-27 03:00:59,274 | INFO     | executing command: cat /etc/os-release
[2025-12-26 19:01:31] 2025-12-27 03:00:59,291 | INFO     | cat /etc/os-release:
[2025-12-26 19:01:31] NAME="CentOS Linux"
[2025-12-26 19:01:31] VERSION="7 (Core)"
[2025-12-26 19:01:31] ID="centos"
[2025-12-26 19:01:31] ID_LIKE="rhel fedora"
[2025-12-26 19:01:31] VERSION_ID="7"
[2025-12-26 19:01:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-26 19:01:31] ANSI_COLOR="0;31"
[2025-12-26 19:01:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-26 19:01:31] HOME_URL="https://www.centos.org/"
[2025-12-26 19:01:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-26 19:01:31] 
[2025-12-26 19:01:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-26 19:01:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-26 19:01:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-26 19:01:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-26 19:01:31] 
[2025-12-26 19:01:31] 2025-12-27 03:00:59,291 | INFO     | ***************************************
[2025-12-26 19:01:31] 2025-12-27 03:00:59,794 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc149/slots/2
[2025-12-26 19:01:31] 2025-12-27 03:00:59,824 | INFO     | sufficient remaining disk space (134556418048 B)
[2025-12-26 19:01:31] 2025-12-27 03:00:59,825 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-26 19:01:31] 2025-12-27 03:00:59,825 | INFO     | current server update state: UPDATING_FINAL
[2025-12-26 19:01:31] 2025-12-27 03:00:59,825 | INFO     | update_server=False
[2025-12-26 19:01:31] 2025-12-27 03:00:59,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-26 19:01:31] 2025-12-27 03:00:59,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-26 19:01:31] 2025-12-27 03:01:00,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-26 19:01:31] 2025-12-27 03:01:00,091 | INFO     | aborting loop
[2025-12-26 19:01:31] 2025-12-27 03:01:00,163 | INFO     | all data control threads have been joined
[2025-12-26 19:01:31] 2025-12-27 03:01:00,830 | INFO     | [job] retrieve thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:00,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-26 19:01:31] 2025-12-27 03:01:00,980 | INFO     | all job control threads have been joined
[2025-12-26 19:01:31] 2025-12-27 03:01:00,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,069 | INFO     | all payload control threads have been joined
[2025-12-26 19:01:31] 2025-12-27 03:01:01,096 | INFO     | [job] job monitor thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,168 | INFO     | [data] control thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,192 | INFO     | [job] create_data_payload thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,218 | INFO     | [data] copytool_in thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,300 | INFO     | [payload] validate_post thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,635 | INFO     | [payload] execute_payloads thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,679 | INFO     | [payload] validate_pre thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,936 | INFO     | [job] validate thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,985 | INFO     | [job] control thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:01,990 | INFO     | [payload] failed_post thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:02,074 | INFO     | [payload] control thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:02,573 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-26 19:01:31] 2025-12-27 03:01:02,950 | INFO     | [data] copytool_out thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:03,578 | INFO     | [job] queue monitor thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:03,939 | INFO     | [data] queue_monitor thread has finished
[2025-12-26 19:01:31] 2025-12-27 03:01:16,769 | INFO     | [monitor] cgroup control has ended
[2025-12-26 19:01:31] 2025-12-27 03:01:17,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126280872994624)>', '<ExcThread(monitor, started 126280510969600)>']
[2025-12-26 19:01:31] 2025-12-27 03:01:22,805 | INFO     | all workflow threads have been joined
[2025-12-26 19:01:31] 2025-12-27 03:01:22,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-26 19:01:31] 2025-12-27 03:01:22,809 | INFO     | traces error code: 0
[2025-12-26 19:01:31] 2025-12-27 03:01:22,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-26 19:01:31] 2025-12-27 03:01:30,663 | INFO     | PID=763614 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-26 19:01:31] 2025-12-27 03:01:30,663 | INFO     | .. there are 15 such processes running
[2025-12-26 19:01:31] 2025-12-27 03:01:30,664 | INFO     | found 0 job(s) in 20 queues
[2025-12-26 19:01:31] 2025-12-27 03:01:30,664 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-26 19:01:31] 2025-12-27 03:01:30,664 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-26 19:01:31] 2025-12-27 03:01:30,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-26 19:01:31] 2025-12-27 03:01:30,664 | INFO     | [monitor] control thread has ended
[2025-12-26 19:01:31] 2025-12-27 03:01:30,788 [wrapper] ==== pilot stdout END ====
[2025-12-26 19:01:31] 2025-12-27 03:01:30,793 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-26 19:01:31] 2025-12-27 03:01:30,799 [wrapper] pilotpid: 763614
[2025-12-26 19:01:31] 2025-12-27 03:01:30,801 [wrapper] Pilot exit status: 0
[2025-12-26 19:01:31] 2025-12-27 03:01:30,810 [wrapper] pandaids: 6937249551
[2025-12-26 19:01:31] 2025-12-27 03:01:30,857 [wrapper] cleanup supervisor_pilot 3378682 763615
[2025-12-26 19:01:31] 2025-12-27 03:01:30,860 [wrapper] Test setup, not cleaning
[2025-12-26 19:01:31] 2025-12-27 03:01:30,862 [wrapper] apfmon messages muted
[2025-12-26 19:01:31] 2025-12-27 03:01:30,863 [wrapper] ==== wrapper stdout END ====
[2025-12-26 19:01:31] 2025-12-27 03:01:30,865 [wrapper] ==== wrapper stderr END ====
[2025-12-26 19:01:31]  *** Error codes and diagnostics ***
[2025-12-26 19:01:31]     "exeErrorCode": 0,
[2025-12-26 19:01:31]     "exeErrorDiag": "",
[2025-12-26 19:01:31]     "pilotErrorCode": 0,
[2025-12-26 19:01:31]     "pilotErrorDiag": "",
[2025-12-26 19:01:31]  *** Listing of results directory ***
[2025-12-26 19:01:31] total 1415408
[2025-12-26 19:01:31] -rw-r--r-- 1 root root    579449 Dec 19 16:14 pilot3.tar.gz
[2025-12-26 19:01:31] -rwx------ 1 4871 1028     36322 Dec 19 16:16 runpilot2-wrapper.sh
[2025-12-26 19:01:31] -rw-r--r-- 1 root root      5112 Dec 19 16:18 queuedata.json
[2025-12-26 19:01:31] -rw-r--r-- 1 root root       100 Dec 25 17:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-26 19:01:31] -rwxr-xr-x 1 root root      7986 Dec 25 17:49 run_atlas
[2025-12-26 19:01:31] -rw-r--r-- 1 root root       105 Dec 25 17:49 job.xml
[2025-12-26 19:01:31] -rw-r--r-- 1 root root      7049 Dec 25 17:49 init_data.xml
[2025-12-26 19:01:31] -rw-r--r-- 2 root root 415285937 Dec 25 17:49 EVNT.47960986._000094.pool.root.1
[2025-12-26 19:01:31] -rw-r--r-- 2 root root     15847 Dec 25 17:49 start_atlas.sh
[2025-12-26 19:01:31] drwxrwx--x 2 root root      4096 Dec 25 17:49 shared
[2025-12-26 19:01:31] -rw-r--r-- 2 root root    592605 Dec 25 17:49 input.tar.gz
[2025-12-26 19:01:31] -rw-r--r-- 1 root root         0 Dec 25 17:49 boinc_lockfile
[2025-12-26 19:01:31] -rw-r--r-- 1 root root      2876 Dec 25 17:49 pandaJob.out
[2025-12-26 19:01:31] -rw------- 1 root root    989280 Dec 25 17:49 agis_schedconf.cvmfs.json
[2025-12-26 19:01:31] drwxr-xr-x 5  320  320      4096 Dec 25 17:49 pilot3
[2025-12-26 19:01:31] -rw-r--r-- 1 root root       533 Dec 26 18:47 boinc_task_state.xml
[2025-12-26 19:01:31] -rw------- 1 root root 998651747 Dec 26 19:00 HITS.47960988._000438.pool.root.1
[2025-12-26 19:01:31] -rw------- 1 root root        95 Dec 26 19:00 pilot_heartbeat.json
[2025-12-26 19:01:31] -rw------- 1 root root      1076 Dec 26 19:00 memory_monitor_summary.json
[2025-12-26 19:01:31] -rw------- 1 root root   1516240 Dec 26 19:00 agis_ddmendpoints.agis.ALL.json
[2025-12-26 19:01:31] -rw------- 1 root root   2948926 Dec 26 19:00 log.47960988._000438.job.log.tgz.1
[2025-12-26 19:01:31] -rw------- 1 root root      8633 Dec 26 19:00 heartbeat.json
[2025-12-26 19:01:31] -rw-r--r-- 1 root root      8192 Dec 26 19:01 boinc_mmap_file
[2025-12-26 19:01:31] -rw-r--r-- 1 root root        29 Dec 26 19:01 wrapper_checkpoint.txt
[2025-12-26 19:01:31] -rw------- 1 root root       822 Dec 26 19:01 pilotlog.txt
[2025-12-26 19:01:31] -rw------- 1 root root  12815084 Dec 26 19:01 log.47960988._000438.job.log.1
[2025-12-26 19:01:31] -rw------- 1 root root       353 Dec 26 19:01 output.list
[2025-12-26 19:01:31] -rw-r--r-- 1 root root       620 Dec 26 19:01 runtime_log
[2025-12-26 19:01:31] -rw------- 1 root root  15779840 Dec 26 19:01 result.tar.gz
[2025-12-26 19:01:31] -rw------- 1 root root       665 Dec 26 19:01 WMRNDmNpzq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMEhKDmCmC0jm.diag
[2025-12-26 19:01:31] -rw-r--r-- 1 root root      9021 Dec 26 19:01 runtime_log.err
[2025-12-26 19:01:31] -rw-r--r-- 1 root root     21717 Dec 26 19:01 stderr.txt
[2025-12-26 19:01:31] HITS file was successfully produced:
[2025-12-26 19:01:31] -rw------- 1 root root 998651747 Dec 26 19:00 shared/HITS.pool.root.1
[2025-12-26 19:01:31]  *** Contents of shared directory: ***
[2025-12-26 19:01:31] total 1396820
[2025-12-26 19:01:31] -rw-r--r-- 2 root root 415285937 Dec 25 17:49 ATLAS.root_0
[2025-12-26 19:01:31] -rw-r--r-- 2 root root     15847 Dec 25 17:49 start_atlas.sh
[2025-12-26 19:01:31] -rw-r--r-- 2 root root    592605 Dec 25 17:49 input.tar.gz
[2025-12-26 19:01:31] -rw------- 1 root root 998651747 Dec 26 19:00 HITS.pool.root.1
[2025-12-26 19:01:31] -rw------- 1 root root  15779840 Dec 26 19:01 result.tar.gz
19:01:33 (759778): run_atlas exited; CPU time 178568.756776
19:01:33 (759778): called boinc_finish(0)

</stderr_txt>
]]>

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