Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:28:01 (3170946): wrapper (7.7.26015): starting
08:28:01 (3170946): wrapper: running run_atlas (--nthreads 3)
[2025-12-21 08:28:01] Arguments: --nthreads 3
[2025-12-21 08:28:01] Threads: 3
[2025-12-21 08:28:01] Checking for CVMFS
[2025-12-21 08:28:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-21 08:28:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-21 08:28:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-21 08:28:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-21 08:28:01] 2.9.2.0 415797 11110 94464 154254 0 81 21475303 36864001 0 130560 0 7086686 99.990 396960 7504 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-21 08:28:01] CVMFS is ok
[2025-12-21 08:28:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-21 08:28:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-21 08:28:01] Further information can be found at the LHC@home message board.
[2025-12-21 08:28:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-21 08:28:01] Checking for apptainer binary...
[2025-12-21 08:28:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-21 08:28:01] Running /usr/bin/apptainer --version
[2025-12-21 08:28:02] apptainer version 1.4.1-1.1
[2025-12-21 08:28:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-21 08:28:02] magicA246a
[2025-12-21 08:28:02] apptainer works
[2025-12-21 08:28:02] Set ATHENA_PROC_NUMBER=3
[2025-12-21 08:28:02] Set ATHENA_CORE_NUMBER=3
[2025-12-21 08:28:02] Starting ATLAS job with PandaID=6936037392
[2025-12-21 08:28:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-21 18:49:04]  *** The last 200 lines of the pilot log: ***
[2025-12-21 18:49:04] 2025-12-21 17:48:31,727 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,727 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,727 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | job 6936037392 has completed (purged errors)
[2025-12-21 18:49:04] 2025-12-21 17:48:31,728 | INFO     | overall cleanup function is called
[2025-12-21 18:49:04] 2025-12-21 17:48:32,736 | INFO     | --- collectZombieJob: --- 10, [3181114]
[2025-12-21 18:49:04] 2025-12-21 17:48:32,736 | INFO     | zombie collector waiting for pid 3181114
[2025-12-21 18:49:04] 2025-12-21 17:48:32,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-21 18:49:04] 2025-12-21 17:48:32,736 | INFO     | collected zombie processes
[2025-12-21 18:49:04] 2025-12-21 17:48:32,737 | INFO     | will attempt to kill all subprocesses of pid=3181114
[2025-12-21 18:49:04] 2025-12-21 17:48:32,794 | INFO     | process IDs to be killed: [3181114] (in reverse order)
[2025-12-21 18:49:04] 2025-12-21 17:48:32,823 | WARNING  | found no corresponding commands to process id(s)
[2025-12-21 18:49:04] 2025-12-21 17:48:32,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-21 18:49:04] 2025-12-21 17:48:32,825 | INFO     | did not find any defunct processes belonging to 3181114
[2025-12-21 18:49:04] 2025-12-21 17:48:32,826 | INFO     | did not find any defunct processes belonging to 3181114
[2025-12-21 18:49:04] 2025-12-21 17:48:32,826 | INFO     | ready for new job
[2025-12-21 18:49:04] 2025-12-21 17:48:32,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-21 18:49:04] 2025-12-21 17:48:32,828 | INFO     | ***************************************
[2025-12-21 18:49:04] 2025-12-21 17:48:32,828 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-21 18:49:04] 2025-12-21 17:48:32,828 | INFO     | ***************************************
[2025-12-21 18:49:04] 2025-12-21 17:48:32,828 | INFO     | 
[2025-12-21 18:49:04] 2025-12-21 17:48:32,828 | INFO     | architecture information:
[2025-12-21 18:49:04] 2025-12-21 17:48:32,828 | INFO     | executing command: cat /etc/os-release
[2025-12-21 18:49:04] 2025-12-21 17:48:32,837 | INFO     | cat /etc/os-release:
[2025-12-21 18:49:04] NAME="CentOS Linux"
[2025-12-21 18:49:04] VERSION="7 (Core)"
[2025-12-21 18:49:04] ID="centos"
[2025-12-21 18:49:04] ID_LIKE="rhel fedora"
[2025-12-21 18:49:04] VERSION_ID="7"
[2025-12-21 18:49:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-21 18:49:04] ANSI_COLOR="0;31"
[2025-12-21 18:49:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-21 18:49:04] HOME_URL="https://www.centos.org/"
[2025-12-21 18:49:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-21 18:49:04] 
[2025-12-21 18:49:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-21 18:49:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-21 18:49:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-21 18:49:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-21 18:49:04] 
[2025-12-21 18:49:04] 2025-12-21 17:48:32,837 | INFO     | ***************************************
[2025-12-21 18:49:04] 2025-12-21 17:48:33,339 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-21 18:49:04] 2025-12-21 17:48:33,361 | INFO     | sufficient remaining disk space (281961037824 B)
[2025-12-21 18:49:04] 2025-12-21 17:48:33,361 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-21 18:49:04] 2025-12-21 17:48:33,361 | INFO     | current server update state: UPDATING_FINAL
[2025-12-21 18:49:04] 2025-12-21 17:48:33,361 | INFO     | update_server=False
[2025-12-21 18:49:04] 2025-12-21 17:48:33,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-21 18:49:04] 2025-12-21 17:48:33,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-21 18:49:04] 2025-12-21 17:48:33,409 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-21 18:49:04] 2025-12-21 17:48:33,410 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-21 18:49:04] 2025-12-21 17:48:33,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-21 18:49:04] 2025-12-21 17:48:33,410 | INFO     | will abort loop
[2025-12-21 18:49:04] 2025-12-21 17:48:33,597 | INFO     | all job control threads have been joined
[2025-12-21 18:49:04] 2025-12-21 17:48:33,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-21 18:49:04] 2025-12-21 17:48:33,905 | INFO     | all data control threads have been joined
[2025-12-21 18:49:04] 2025-12-21 17:48:34,276 | INFO     | all payload control threads have been joined
[2025-12-21 18:49:04] 2025-12-21 17:48:34,366 | INFO     | [job] retrieve thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:34,367 | INFO     | [job] queue monitor thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:34,415 | INFO     | [job] job monitor thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:34,602 | INFO     | [job] control thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:34,655 | INFO     | [payload] execute_payloads thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:34,911 | INFO     | [data] control thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:35,148 | INFO     | [data] copytool_in thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:35,211 | INFO     | [job] create_data_payload thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:35,211 | INFO     | [job] validate thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:35,281 | INFO     | [payload] control thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:35,286 | INFO     | [payload] validate_post thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:35,350 | INFO     | [payload] validate_pre thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:35,726 | INFO     | [payload] failed_post thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:35,742 | INFO     | [data] copytool_out thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:36,262 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-21 18:49:04] 2025-12-21 17:48:40,269 | INFO     | [data] queue_monitor thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:43,948 | INFO     | job.realtimelogging is not enabled
[2025-12-21 18:49:04] 2025-12-21 17:48:44,953 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-21 18:49:04] 2025-12-21 17:48:44,954 | INFO     | [monitor] cgroup control has ended
[2025-12-21 18:49:04] 2025-12-21 17:48:45,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140595939379008)>', '<ExcThread(monitor, started 140595444033280)>']
[2025-12-21 18:49:04] 2025-12-21 17:48:50,252 | INFO     | all workflow threads have been joined
[2025-12-21 18:49:04] 2025-12-21 17:48:50,252 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-21 18:49:04] 2025-12-21 17:48:50,253 | INFO     | traces error code: 0
[2025-12-21 18:49:04] 2025-12-21 17:48:50,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-21 18:49:04] 2025-12-21 17:49:04,187 | INFO     | PID=3174675 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-21 18:49:04] 2025-12-21 17:49:04,187 | INFO     | found 0 job(s) in 20 queues
[2025-12-21 18:49:04] 2025-12-21 17:49:04,187 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-21 18:49:04] 2025-12-21 17:49:04,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-21 18:49:04] 2025-12-21 17:49:04,187 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-21 18:49:04] 2025-12-21 17:49:04,188 | INFO     | [monitor] control thread has ended
[2025-12-21 18:49:04] 2025-12-21 17:49:04,238 [wrapper] ==== pilot stdout END ====
[2025-12-21 18:49:04] 2025-12-21 17:49:04,241 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-21 18:49:04] 2025-12-21 17:49:04,243 [wrapper] pilotpid: 3174675
[2025-12-21 18:49:04] 2025-12-21 17:49:04,245 [wrapper] Pilot exit status: 0
[2025-12-21 18:49:04] 2025-12-21 17:49:04,253 [wrapper] pandaids: 6936037392
[2025-12-21 18:49:04] 2025-12-21 17:49:04,272 [wrapper] cleanup supervisor_pilot 3252981 3174676
[2025-12-21 18:49:04] 2025-12-21 17:49:04,274 [wrapper] Test setup, not cleaning
[2025-12-21 18:49:04] 2025-12-21 17:49:04,277 [wrapper] apfmon messages muted
[2025-12-21 18:49:04] 2025-12-21 17:49:04,279 [wrapper] ==== wrapper stdout END ====
[2025-12-21 18:49:04] 2025-12-21 17:49:04,281 [wrapper] ==== wrapper stderr END ====
[2025-12-21 18:49:04]  *** Error codes and diagnostics ***
[2025-12-21 18:49:04]     "exeErrorCode": 0,
[2025-12-21 18:49:04]     "exeErrorDiag": "",
[2025-12-21 18:49:04]     "pilotErrorCode": 0,
[2025-12-21 18:49:04]     "pilotErrorDiag": "",
[2025-12-21 18:49:04]  *** Listing of results directory ***
[2025-12-21 18:49:04] total 1386124
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc    579449 Dec 20 01:14 pilot3.tar.gz
[2025-12-21 18:49:04] -rwx------ 1 boinc boinc     36322 Dec 20 01:15 runpilot2-wrapper.sh
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc      5112 Dec 20 01:18 queuedata.json
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc       100 Dec 21 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-21 18:49:04] -rwxr-xr-x 1 boinc boinc      7986 Dec 21 08:28 run_atlas
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc       105 Dec 21 08:28 job.xml
[2025-12-21 18:49:04] -rw-r--r-- 2 boinc boinc 417267020 Dec 21 08:28 EVNT.47947080._000080.pool.root.1
[2025-12-21 18:49:04] -rw-r--r-- 2 boinc boinc    592603 Dec 21 08:28 input.tar.gz
[2025-12-21 18:49:04] -rw-r--r-- 2 boinc boinc     15847 Dec 21 08:28 start_atlas.sh
[2025-12-21 18:49:04] drwxrwx--x 2 boinc boinc      4096 Dec 21 08:28 shared
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc         0 Dec 21 08:28 boinc_setup_complete
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc      6447 Dec 21 08:28 init_data.xml
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc         0 Dec 21 08:28 boinc_lockfile
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc      2877 Dec 21 08:28 pandaJob.out
[2025-12-21 18:49:04] -rw------- 1 boinc boinc    988146 Dec 21 08:28 agis_schedconf.cvmfs.json
[2025-12-21 18:49:04] drwx------ 5 boinc boinc      4096 Dec 21 08:28 pilot3
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc       532 Dec 21 18:44 boinc_task_state.xml
[2025-12-21 18:49:04] -rw------- 1 boinc boinc 985214744 Dec 21 18:48 HITS.47947082._000798.pool.root.1
[2025-12-21 18:49:04] -rw------- 1 boinc boinc      1020 Dec 21 18:48 memory_monitor_summary.json
[2025-12-21 18:49:04] -rw------- 1 boinc boinc   1516240 Dec 21 18:48 agis_ddmendpoints.agis.ALL.json
[2025-12-21 18:49:04] -rw------- 1 boinc boinc   1275021 Dec 21 18:48 log.47947082._000798.job.log.tgz.1
[2025-12-21 18:49:04] -rw------- 1 boinc boinc      8582 Dec 21 18:48 heartbeat.json
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc      8192 Dec 21 18:48 boinc_mmap_file
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc        29 Dec 21 18:48 wrapper_checkpoint.txt
[2025-12-21 18:49:04] -rw------- 1 boinc boinc       747 Dec 21 18:49 pilotlog.txt
[2025-12-21 18:49:04] -rw------- 1 boinc boinc        95 Dec 21 18:49 pilot_heartbeat.json
[2025-12-21 18:49:04] -rw------- 1 boinc boinc   5225199 Dec 21 18:49 log.47947082._000798.job.log.1
[2025-12-21 18:49:04] -rw------- 1 boinc boinc       353 Dec 21 18:49 output.list
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc       620 Dec 21 18:49 runtime_log
[2025-12-21 18:49:04] -rw------- 1 boinc boinc   6522880 Dec 21 18:49 result.tar.gz
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc      8918 Dec 21 18:49 runtime_log.err
[2025-12-21 18:49:04] -rw------- 1 boinc boinc       670 Dec 21 18:49 3SsNDmaozq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYOcKDmQzLptm.diag
[2025-12-21 18:49:04] -rw-r--r-- 1 boinc boinc     12363 Dec 21 18:49 stderr.txt
[2025-12-21 18:49:04] HITS file was successfully produced:
[2025-12-21 18:49:04] -rw------- 1 boinc boinc 985214744 Dec 21 18:48 shared/HITS.pool.root.1
[2025-12-21 18:49:04]  *** Contents of shared directory: ***
[2025-12-21 18:49:04] total 1376588
[2025-12-21 18:49:04] -rw-r--r-- 2 boinc boinc 417267020 Dec 21 08:28 ATLAS.root_0
[2025-12-21 18:49:04] -rw-r--r-- 2 boinc boinc    592603 Dec 21 08:28 input.tar.gz
[2025-12-21 18:49:04] -rw-r--r-- 2 boinc boinc     15847 Dec 21 08:28 start_atlas.sh
[2025-12-21 18:49:04] -rw------- 1 boinc boinc 985214744 Dec 21 18:48 HITS.pool.root.1
[2025-12-21 18:49:04] -rw------- 1 boinc boinc   6522880 Dec 21 18:49 result.tar.gz
18:49:05 (3170946): run_atlas exited; CPU time 110361.703228
18:49:05 (3170946): called boinc_finish(0)

</stderr_txt>
]]>

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