Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:24:36 (4145840): wrapper (7.7.26015): starting
01:24:36 (4145840): wrapper: running run_atlas (--nthreads 8)
[2025-12-20 01:24:36] Arguments: --nthreads 8
[2025-12-20 01:24:36] Threads: 8
[2025-12-20 01:24:36] Checking for CVMFS
[2025-12-20 01:24:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-20 01:24:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-20 01:24:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-20 01:24:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-20 01:24:37] 2.11.3.0 3736257 27673 236536 154220 2 304 25354129 45568000 16378 130560 0 131559454 99.786 81097896 21048 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-20 01:24:37] CVMFS is ok
[2025-12-20 01:24:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-20 01:24:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-20 01:24:37] Further information can be found at the LHC@home message board.
[2025-12-20 01:24:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-20 01:24:37] Checking for apptainer binary...
[2025-12-20 01:24:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-20 01:24:37] Running /usr/bin/apptainer --version
[2025-12-20 01:24:37] apptainer version 1.4.1-1.el9
[2025-12-20 01:24:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-20 01:24:38] wns0013.triumf.lcg
[2025-12-20 01:24:38] apptainer works
[2025-12-20 01:24:38] Set ATHENA_PROC_NUMBER=8
[2025-12-20 01:24:38] Set ATHENA_CORE_NUMBER=8
[2025-12-20 01:24:38] Starting ATLAS job with PandaID=6936036855
[2025-12-20 01:24:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-20 01:29:26]  *** The last 200 lines of the pilot log: ***
[2025-12-20 01:29:26] 2025-12-20 09:28:51,690 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-20 01:29:26] 2025-12-20 09:28:51,690 | WARNING  | wrong length of table data, x=[1766222771.0], y=[1465.0] (must be same and length>=4)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | ..............................
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . Timing measurements:
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . get job = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . initial setup = 3 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . payload setup = 13 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . stage-in = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . payload execution = 54 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . stage-out = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . log creation = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | ..............................
[2025-12-20 01:29:26] 2025-12-20 09:28:51,692 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-20 01:29:26] 2025-12-20 09:28:51,692 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6936036855/pilotlog.txt
[2025-12-20 01:29:26] 2025-12-20 09:28:51,710 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-20 01:29:26] - Log from pilotlog.txt -
[2025-12-20 01:29:26] 2025-12-20 09:28:51,687 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6936036855/memory_monitor_summary.json (trf name=prmon)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,689 | INFO     | extracted standard info from prmon json
[2025-12-20 01:29:26] 2025-12-20 09:28:51,689 | INFO     | extracted standard memory fields from prmon json
[2025-12-20 01:29:26] 2025-12-20 09:28:51,689 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-20 01:29:26] 2025-12-20 09:28:51,689 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-20 01:29:26] 2025-12-20 09:28:51,690 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-20 01:29:26] 2025-12-20 09:28:51,690 | WARNING  | wrong length of table data, x=[1766222771.0], y=[1465.0] (must be same and length>=4)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | ..............................
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . Timing measurements:
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . get job = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . initial setup = 3 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . payload setup = 13 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . stage-in = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . payload execution = 54 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . stage-out = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . log creation = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | ..............................
[2025-12-20 01:29:26] 2025-12-20 09:28:51,692 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-20 01:29:26] 2025-12-20 09:28:51,692 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6936036855/pilotlog.txt
[2025-12-20 01:29:26] 2025-12-20 09:28:51,710 | WARNING  | 
[2025-12-20 01:29:26] [begin log extracts]
[2025-12-20 01:29:26] - Log from pilotlog.txt -
[2025-12-20 01:29:26] 2025-12-20 09:28:51,687 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6936036855/memory_monitor_summary.json (trf name=prmon)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,689 | INFO     | extracted standard info from prmon json
[2025-12-20 01:29:26] 2025-12-20 09:28:51,689 | INFO     | extracted standard memory fields from prmon json
[2025-12-20 01:29:26] 2025-12-20 09:28:51,689 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-20 01:29:26] 2025-12-20 09:28:51,689 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-20 01:29:26] 2025-12-20 09:28:51,690 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-20 01:29:26] 2025-12-20 09:28:51,690 | WARNING  | wrong length of table data, x=[1766222771.0], y=[1465.0] (must be same and length>=4)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | ..............................
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . Timing measurements:
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . get job = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . initial setup = 3 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . payload setup = 13 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . stage-in = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . payload execution = 54 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . stage-out = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | . log creation = 0 s
[2025-12-20 01:29:26] 2025-12-20 09:28:51,691 | INFO     | ..............................
[2025-12-20 01:29:26] 2025-12-20 09:28:51,692 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-20 01:29:26] 2025-12-20 09:28:51,692 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6936036855/pilotlog.txt
[2025-12-20 01:29:26] [end log extracts]
[2025-12-20 01:29:26] 2025-12-20 09:28:51,711 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-20 01:29:26] 2025-12-20 09:28:51,712 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-20 01:29:26] 2025-12-20 09:28:52,263 | INFO     | 
[2025-12-20 01:29:26] 2025-12-20 09:28:52,263 | INFO     | job summary report
[2025-12-20 01:29:26] 2025-12-20 09:28:52,263 | INFO     | --------------------------------------------------
[2025-12-20 01:29:26] 2025-12-20 09:28:52,263 | INFO     | PanDA job id: 6936036855
[2025-12-20 01:29:26] 2025-12-20 09:28:52,263 | INFO     | task id: 47929280
[2025-12-20 01:29:26] 2025-12-20 09:28:52,263 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-20 01:26:37,516 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | pilot state: failed 
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | transexitcode: 65
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | exeerrorcode: 65
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | exitcode: 65
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | cpuconsumptiontime: 19 s
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | nevents: 0
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | neventsw: 0
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | pid: 4159418
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | pgrp: 4159418
[2025-12-20 01:29:26] 2025-12-20 09:28:52,264 | INFO     | corecount: 8
[2025-12-20 01:29:26] 2025-12-20 09:28:52,265 | INFO     | event service: False
[2025-12-20 01:29:26] 2025-12-20 09:28:52,265 | INFO     | sizes: {0: 2283754, 1: 2284009, 2: 2284009, 13: 2284037, 15: 2284355, 23: 2284383, 71: 2307931, 72: 2312227, 73: 2312227, 197: 2312393}
[2025-12-20 01:29:26] 2025-12-20 09:28:52,265 | INFO     | --------------------------------------------------
[2025-12-20 01:29:26] 2025-12-20 09:28:52,265 | INFO     | 
[2025-12-20 01:29:26] 2025-12-20 09:28:52,265 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-20 01:29:26] 2025-12-20 09:28:52,380 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,381 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | job 6936036855 has completed (purged errors)
[2025-12-20 01:29:26] 2025-12-20 09:28:52,382 | INFO     | overall cleanup function is called
[2025-12-20 01:29:26] 2025-12-20 09:28:52,878 | INFO     | PID=4150132 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-20 01:29:26] 2025-12-20 09:28:52,878 | INFO     | .. there are 19 such processes running
[2025-12-20 01:29:26] 2025-12-20 09:28:53,439 | INFO     | --- collectZombieJob: --- 10, [4159418]
[2025-12-20 01:29:26] 2025-12-20 09:28:53,439 | INFO     | zombie collector waiting for pid 4159418
[2025-12-20 01:29:26] 2025-12-20 09:28:53,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-20 01:29:26] 2025-12-20 09:28:53,439 | INFO     | collected zombie processes
[2025-12-20 01:29:26] 2025-12-20 09:28:53,439 | INFO     | will attempt to kill all subprocesses of pid=4159418
[2025-12-20 01:29:26] 2025-12-20 09:28:54,269 | INFO     | process IDs to be killed: [4159418] (in reverse order)
[2025-12-20 01:29:26] 2025-12-20 09:28:54,480 | WARNING  | found no corresponding commands to process id(s)
[2025-12-20 01:29:26] 2025-12-20 09:28:54,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-20 01:29:26] 2025-12-20 09:28:54,533 | INFO     | did not find any defunct processes belonging to 4159418
[2025-12-20 01:29:26] 2025-12-20 09:28:54,564 | INFO     | did not find any defunct processes belonging to 4159418
[2025-12-20 01:29:26] 2025-12-20 09:28:54,565 | INFO     | ready for new job
[2025-12-20 01:29:26] 2025-12-20 09:28:54,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-20 01:29:26] 2025-12-20 09:28:54,570 | INFO     | ***************************************
[2025-12-20 01:29:26] 2025-12-20 09:28:54,570 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-20 01:29:26] 2025-12-20 09:28:54,570 | INFO     | ***************************************
[2025-12-20 01:29:26] 2025-12-20 09:28:54,570 | INFO     | 
[2025-12-20 01:29:26] 2025-12-20 09:28:54,571 | INFO     | architecture information:
[2025-12-20 01:29:26] 2025-12-20 09:28:54,593 | INFO     | executing command: cat /etc/os-release
[2025-12-20 01:29:26] 2025-12-20 09:28:54,622 | INFO     | cat /etc/os-release:
[2025-12-20 01:29:26] NAME="CentOS Linux"
[2025-12-20 01:29:26] VERSION="7 (Core)"
[2025-12-20 01:29:26] ID="centos"
[2025-12-20 01:29:26] ID_LIKE="rhel fedora"
[2025-12-20 01:29:26] VERSION_ID="7"
[2025-12-20 01:29:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-20 01:29:26] ANSI_COLOR="0;31"
[2025-12-20 01:29:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-20 01:29:26] HOME_URL="https://www.centos.org/"
[2025-12-20 01:29:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-20 01:29:26] 
[2025-12-20 01:29:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-20 01:29:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-20 01:29:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-20 01:29:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-20 01:29:26] 
[2025-12-20 01:29:26] 2025-12-20 09:28:54,623 | INFO     | ***************************************
[2025-12-20 01:29:26] 2025-12-20 09:28:55,126 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-20 01:29:26] 2025-12-20 09:28:55,258 | INFO     | sufficient remaining disk space (1287091388416 B)
[2025-12-20 01:29:26] 2025-12-20 09:28:55,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-20 01:29:26] 2025-12-20 09:28:55,259 | INFO     | current server update state: UPDATING_FINAL
[2025-12-20 01:29:26] 2025-12-20 09:28:55,259 | INFO     | update_server=False
[2025-12-20 01:29:26] 2025-12-20 09:28:55,259 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-20 01:29:26] 2025-12-20 09:28:55,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-20 01:29:26] 2025-12-20 09:28:55,280 | INFO     | aborting loop
[2025-12-20 01:29:26] 2025-12-20 09:28:55,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-20 01:29:26] 2025-12-20 09:28:56,000 | INFO     | all payload control threads have been joined
[2025-12-20 01:29:26] 2025-12-20 09:28:56,131 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-20 01:29:26] 2025-12-20 09:28:56,266 | INFO     | [job] retrieve thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:56,286 | INFO     | [job] job monitor thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:56,301 | INFO     | all data control threads have been joined
[2025-12-20 01:29:26] 2025-12-20 09:28:56,593 | INFO     | all job control threads have been joined
[2025-12-20 01:29:26] 2025-12-20 09:28:56,802 | INFO     | [payload] failed_post thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:56,826 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:56,864 | INFO     | [payload] execute_payloads thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:57,006 | INFO     | [payload] control thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:57,115 | INFO     | [data] copytool_in thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:57,217 | INFO     | [job] validate thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:57,307 | INFO     | [data] control thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:57,338 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-20 01:29:26] 2025-12-20 09:28:57,410 | INFO     | [payload] validate_post thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:57,586 | INFO     | [job] create_data_payload thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:57,599 | INFO     | [job] control thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:57,701 | INFO     | [payload] validate_pre thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:58,138 | INFO     | [data] copytool_out thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:58,344 | INFO     | [job] queue monitor thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:28:59,971 | INFO     | [data] queue_monitor thread has finished
[2025-12-20 01:29:26] 2025-12-20 09:29:01,851 | INFO     | [monitor] cgroup control has ended
[2025-12-20 01:29:26] 2025-12-20 09:29:02,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140202413770560)>', '<ExcThread(monitor, started 140201884116736)>']
[2025-12-20 01:29:26] 2025-12-20 09:29:07,699 | INFO     | all workflow threads have been joined
[2025-12-20 01:29:26] 2025-12-20 09:29:07,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-20 01:29:26] 2025-12-20 09:29:07,699 | INFO     | traces error code: 0
[2025-12-20 01:29:26] 2025-12-20 09:29:07,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-20 01:29:26] 2025-12-20 09:29:25,450 | INFO     | PID=4150132 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-20 01:29:26] 2025-12-20 09:29:25,450 | INFO     | .. there are 19 such processes running
[2025-12-20 01:29:26] 2025-12-20 09:29:25,451 | INFO     | found 0 job(s) in 20 queues
[2025-12-20 01:29:26] 2025-12-20 09:29:25,451 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-20 01:29:26] 2025-12-20 09:29:25,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-20 01:29:26] 2025-12-20 09:29:25,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-20 01:29:26] 2025-12-20 09:29:25,451 | INFO     | [monitor] control thread has ended
[2025-12-20 01:29:26] 2025-12-20 09:29:25,592 [wrapper] ==== pilot stdout END ====
[2025-12-20 01:29:26] 2025-12-20 09:29:25,618 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-20 01:29:26] 2025-12-20 09:29:25,635 [wrapper] pilotpid: 4150132
[2025-12-20 01:29:26] 2025-12-20 09:29:25,664 [wrapper] Pilot exit status: 0
[2025-12-20 01:29:26] 2025-12-20 09:29:25,802 [wrapper] pandaids: 6936036855
[2025-12-20 01:29:26] 2025-12-20 09:29:25,957 [wrapper] cleanup supervisor_pilot 4150139 4150133
[2025-12-20 01:29:26] 2025-12-20 09:29:25,959 [wrapper] Test setup, not cleaning
[2025-12-20 01:29:26] 2025-12-20 09:29:25,961 [wrapper] apfmon messages muted
[2025-12-20 01:29:26] 2025-12-20 09:29:25,963 [wrapper] ==== wrapper stdout END ====
[2025-12-20 01:29:26] 2025-12-20 09:29:25,965 [wrapper] ==== wrapper stderr END ====
[2025-12-20 01:29:26]  *** Error codes and diagnostics ***
[2025-12-20 01:29:26]     "exeErrorCode": 65,
[2025-12-20 01:29:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-20 01:29:26]     "pilotErrorCode": 1305,
[2025-12-20 01:29:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-20 01:29:26]  *** Listing of results directory ***
[2025-12-20 01:29:26] total 251336
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc    579449 Dec 19 16:14 pilot3.tar.gz
[2025-12-20 01:29:26] -rwx------. 1 boinc boinc     36322 Dec 19 16:15 runpilot2-wrapper.sh
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc      5112 Dec 19 16:18 queuedata.json
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc       100 Dec 20 01:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-20 01:29:26] -rwxr-xr-x. 1 boinc boinc      7986 Dec 20 01:24 run_atlas
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc       105 Dec 20 01:24 job.xml
[2025-12-20 01:29:26] -rw-r--r--. 2 boinc boinc 253228211 Dec 20 01:24 EVNT.47929278._000188.pool.root.1
[2025-12-20 01:29:26] -rw-r--r--. 2 boinc boinc     15847 Dec 20 01:24 start_atlas.sh
[2025-12-20 01:29:26] drwxrwx--x. 2 boinc boinc      4096 Dec 20 01:24 shared
[2025-12-20 01:29:26] -rw-r--r--. 2 boinc boinc    592418 Dec 20 01:24 input.tar.gz
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc      6446 Dec 20 01:24 init_data.xml
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc         0 Dec 20 01:24 boinc_lockfile
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc      2566 Dec 20 01:24 pandaJob.out
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc    988138 Dec 20 01:24 agis_schedconf.cvmfs.json
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc   1516240 Dec 20 01:25 agis_ddmendpoints.agis.ALL.json
[2025-12-20 01:29:26] drwx------. 5 boinc boinc      4096 Dec 20 01:25 pilot3
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc       525 Dec 20 01:26 boinc_task_state.xml
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc       970 Dec 20 01:26 memory_monitor_summary.json
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc     22057 Dec 20 01:26 log.47929280._004715.job.log.tgz.1
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc      8394 Dec 20 01:28 heartbeat.json
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc      8192 Dec 20 01:29 boinc_mmap_file
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc        23 Dec 20 01:29 wrapper_checkpoint.txt
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc       823 Dec 20 01:29 pilotlog.txt
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc        95 Dec 20 01:29 pilot_heartbeat.json
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc     91124 Dec 20 01:29 log.47929280._004715.job.log.1
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc       188 Dec 20 01:29 output.list
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc       620 Dec 20 01:29 runtime_log
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc    133120 Dec 20 01:29 result.tar.gz
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc       644 Dec 20 01:29 T4aKDmaozq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1McKDmqzIvDm.diag
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc      8634 Dec 20 01:29 runtime_log.err
[2025-12-20 01:29:26] -rw-r--r--. 1 boinc boinc     21933 Dec 20 01:29 stderr.txt
[2025-12-20 01:29:26] No HITS result produced
[2025-12-20 01:29:26]  *** Contents of shared directory: ***
[2025-12-20 01:29:26] total 248028
[2025-12-20 01:29:26] -rw-r--r--. 2 boinc boinc 253228211 Dec 20 01:24 ATLAS.root_0
[2025-12-20 01:29:26] -rw-r--r--. 2 boinc boinc     15847 Dec 20 01:24 start_atlas.sh
[2025-12-20 01:29:26] -rw-r--r--. 2 boinc boinc    592418 Dec 20 01:24 input.tar.gz
[2025-12-20 01:29:26] -rw-------. 1 boinc boinc    133120 Dec 20 01:29 result.tar.gz
01:29:27 (4145840): run_atlas exited; CPU time 28.922581
01:29:27 (4145840): called boinc_finish(0)

</stderr_txt>
]]>

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