Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:24:20 (1497470): wrapper (7.7.26015): starting
06:24:20 (1497470): wrapper: running run_atlas (--nthreads 4)
[2025-12-21 06:24:20] Arguments: --nthreads 4
[2025-12-21 06:24:20] Threads: 4
[2025-12-21 06:24:20] Checking for CVMFS
[2025-12-21 06:24:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-21 06:24:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-21 06:24:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-21 06:24:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-21 06:24:20] 2.9.2.0 3067 5301 100840 154251 1 57 19490926 36864000 0 130560 0 3899457 99.991 187818 4155 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-21 06:24:20] CVMFS is ok
[2025-12-21 06:24:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-21 06:24:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-21 06:24:20] Further information can be found at the LHC@home message board.
[2025-12-21 06:24:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-21 06:24:20] Checking for apptainer binary...
[2025-12-21 06:24:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-21 06:24:20] Running /usr/bin/apptainer --version
[2025-12-21 06:24:20] apptainer version 1.4.1-1.1
[2025-12-21 06:24:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-21 06:24:20] thA314
[2025-12-21 06:24:20] apptainer works
[2025-12-21 06:24:20] Set ATHENA_PROC_NUMBER=4
[2025-12-21 06:24:20] Set ATHENA_CORE_NUMBER=4
[2025-12-21 06:24:20] Starting ATLAS job with PandaID=6935457066
[2025-12-21 06:24:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-21 07:36:49]  *** The last 200 lines of the pilot log: ***
[2025-12-21 07:36:49]  mtime=0
[2025-12-21 07:36:49]  protocol_id=None
[2025-12-21 07:36:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-21 07:36:49]  replicas=None
[2025-12-21 07:36:49]  scope=mc23_13p6TeV
[2025-12-21 07:36:49]  status=None
[2025-12-21 07:36:49]  status_code=0
[2025-12-21 07:36:49]  storage_token=
[2025-12-21 07:36:49]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6935457066/log.47929392._001618.job.log.tgz.1
[2025-12-21 07:36:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/0d/log.47929392._001618.job.log.tgz.1
[2025-12-21 07:36:49]  workdir=None
[2025-12-21 07:36:49] ]
[2025-12-21 07:36:49] 2025-12-21 06:36:10,109 | INFO     | transferring file log.47929392._001618.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6935457066/log.47929392._001618.job.log.tgz.1 to /local/data/boinc/
[2025-12-21 07:36:49] 2025-12-21 06:36:10,109 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6935457066/log.47929392._001618.job.log.tgz.1 /local/data/boinc/slots/0/log.47929392._0016
[2025-12-21 07:36:49] 2025-12-21 06:36:10,128 | INFO     | adding to output.list: log.47929392._001618.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/0d/log.47929392._001618.job.log.tg
[2025-12-21 07:36:49] 2025-12-21 06:36:10,128 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-21 07:36:49] 2025-12-21 06:36:10,128 | INFO     | summary of transferred files:
[2025-12-21 07:36:49] 2025-12-21 06:36:10,128 | INFO     |  -- lfn=log.47929392._001618.job.log.tgz.1, status_code=0, status=transferred
[2025-12-21 07:36:49] 2025-12-21 06:36:10,128 | INFO     | stage-out finished correctly
[2025-12-21 07:36:49] 2025-12-21 06:36:10,515 | INFO     | time since job start (4302s) is within the limit (174528.0s)
[2025-12-21 07:36:49] 2025-12-21 06:36:11,403 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-21 07:36:49] 2025-12-21 06:36:11,555 | INFO     | monitor loop #332: job 0:6935457066 is in state 'finished'
[2025-12-21 07:36:49] 2025-12-21 06:36:11,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 07:36:49] 2025-12-21 06:36:12,521 | INFO     | time since job start (4304s) is within the limit (174528.0s)
[2025-12-21 07:36:49] 2025-12-21 06:36:13,145 | INFO     | job 6935457066 has state=finished
[2025-12-21 07:36:49] 2025-12-21 06:36:13,146 | INFO     | preparing for final server update for job 6935457066 in state='finished'
[2025-12-21 07:36:49] 2025-12-21 06:36:13,146 | INFO     | this job has now completed (state=finished)
[2025-12-21 07:36:49] 2025-12-21 06:36:13,146 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-21 07:36:49] 2025-12-21 06:36:13,146 | INFO     | log transfer has been attempted: DONE
[2025-12-21 07:36:49] 2025-12-21 06:36:13,146 | INFO     | job 6935457066 has finished - writing final server update
[2025-12-21 07:36:49] 2025-12-21 06:36:13,147 | INFO     | total number of processed events: 400 (read)
[2025-12-21 07:36:49] 2025-12-21 06:36:13,147 | INFO     | executing command: lscpu
[2025-12-21 07:36:49] 2025-12-21 06:36:13,169 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-21 07:36:49] 2025-12-21 06:36:14,058 | INFO     | monitor loop #333: job 0:6935457066 is in state 'finished'
[2025-12-21 07:36:49] 2025-12-21 06:36:14,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 07:36:49] 2025-12-21 06:36:14,527 | INFO     | time since job start (4306s) is within the limit (174528.0s)
[2025-12-21 07:36:49] 2025-12-21 06:36:16,532 | INFO     | time since job start (4308s) is within the limit (174528.0s)
[2025-12-21 07:36:49] 2025-12-21 06:36:16,561 | INFO     | monitor loop #334: job 0:6935457066 is in state 'finished'
[2025-12-21 07:36:49] 2025-12-21 06:36:16,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-21 07:36:49] 2025-12-21 06:36:17,869 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-21 07:36:49] 2025-12-21 06:36:17,871 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3570.193375
[2025-12-21 07:36:49] 2025-12-21 06:36:17,872 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6935457066/memory_monitor_summary.json (trf name=prmon)
[2025-12-21 07:36:49] 2025-12-21 06:36:17,873 | INFO     | extracted standard info from prmon json
[2025-12-21 07:36:49] 2025-12-21 06:36:17,873 | INFO     | extracted standard memory fields from prmon json
[2025-12-21 07:36:49] 2025-12-21 06:36:17,873 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-21 07:36:49] 2025-12-21 06:36:17,873 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-21 07:36:49] 2025-12-21 06:36:17,873 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | fitting pss+swap vs Time
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | sum of square deviations: 81266640.0
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | sum of deviations: -8627103181.0
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | mean x: 1766296918.5
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | mean y: 2595461.6875
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | intersect: 187509126606.3472
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | chi2: 0.0369446884011568
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | current memory leak: -106.16 B/s (using 64 data points, chi2=0.04)
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | could have reported an average CPU frequency of 3608 MHz (6 samples)
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | ..............................
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | . Timing measurements:
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | . get job = 0 s
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | . initial setup = 1 s
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | . payload setup = 4 s
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | . stage-in = 0 s
[2025-12-21 07:36:49] 2025-12-21 06:36:17,874 | INFO     | . payload execution = 4277 s
[2025-12-21 07:36:49] 2025-12-21 06:36:17,875 | INFO     | . stage-out = 0 s
[2025-12-21 07:36:49] 2025-12-21 06:36:17,875 | INFO     | . log creation = 0 s
[2025-12-21 07:36:49] 2025-12-21 06:36:17,875 | INFO     | ..............................
[2025-12-21 07:36:49] 2025-12-21 06:36:17,914 | INFO     | 
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | job summary report
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | --------------------------------------------------
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | PanDA job id: 6935457066
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | task id: 47929392
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | errors: (none)
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | pilot state: finished 
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | transexitcode: 0
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | exeerrorcode: 0
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | exeerrordiag: 
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | exitcode: 0
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | exitmsg: OK
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | cpuconsumptiontime: 16259 s
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | nevents: 400
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | neventsw: 0
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | pid: 1507858
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | pgrp: 1507858
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | corecount: 4
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | event service: False
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | sizes: {0: 2283848, 1: 2284047, 4: 2284309, 11: 2284337, 4285: 2310522, 4287: 2319526, 4288: 2319710, 4294: 2319904}
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | --------------------------------------------------
[2025-12-21 07:36:49] 2025-12-21 06:36:17,915 | INFO     | 
[2025-12-21 07:36:49] 2025-12-21 06:36:17,916 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,934 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,935 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,935 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,935 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,935 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-21 07:36:49] 2025-12-21 06:36:17,935 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,935 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-21 07:36:49] 2025-12-21 06:36:17,935 | INFO     | job 6935457066 has completed (purged errors)
[2025-12-21 07:36:49] 2025-12-21 06:36:17,935 | INFO     | overall cleanup function is called
[2025-12-21 07:36:49] 2025-12-21 06:36:18,941 | INFO     | --- collectZombieJob: --- 10, [1507858]
[2025-12-21 07:36:49] 2025-12-21 06:36:18,941 | INFO     | zombie collector waiting for pid 1507858
[2025-12-21 07:36:49] 2025-12-21 06:36:18,941 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-21 07:36:49] 2025-12-21 06:36:18,942 | INFO     | collected zombie processes
[2025-12-21 07:36:49] 2025-12-21 06:36:18,942 | INFO     | will attempt to kill all subprocesses of pid=1507858
[2025-12-21 07:36:49] 2025-12-21 06:36:18,987 | INFO     | process IDs to be killed: [1507858] (in reverse order)
[2025-12-21 07:36:49] 2025-12-21 06:36:19,020 | WARNING  | found no corresponding commands to process id(s)
[2025-12-21 07:36:49] 2025-12-21 06:36:19,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-21 07:36:49] 2025-12-21 06:36:19,023 | INFO     | did not find any defunct processes belonging to 1507858
[2025-12-21 07:36:49] 2025-12-21 06:36:19,024 | INFO     | did not find any defunct processes belonging to 1507858
[2025-12-21 07:36:49] 2025-12-21 06:36:19,024 | INFO     | ready for new job
[2025-12-21 07:36:49] 2025-12-21 06:36:19,024 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-21 07:36:49] 2025-12-21 06:36:19,025 | INFO     | ***************************************
[2025-12-21 07:36:49] 2025-12-21 06:36:19,025 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-21 07:36:49] 2025-12-21 06:36:19,025 | INFO     | ***************************************
[2025-12-21 07:36:49] 2025-12-21 06:36:19,025 | INFO     | 
[2025-12-21 07:36:49] 2025-12-21 06:36:19,025 | INFO     | architecture information:
[2025-12-21 07:36:49] 2025-12-21 06:36:19,026 | INFO     | executing command: cat /etc/os-release
[2025-12-21 07:36:49] 2025-12-21 06:36:19,040 | INFO     | cat /etc/os-release:
[2025-12-21 07:36:49] NAME="CentOS Linux"
[2025-12-21 07:36:49] VERSION="7 (Core)"
[2025-12-21 07:36:49] ID="centos"
[2025-12-21 07:36:49] ID_LIKE="rhel fedora"
[2025-12-21 07:36:49] VERSION_ID="7"
[2025-12-21 07:36:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-21 07:36:49] ANSI_COLOR="0;31"
[2025-12-21 07:36:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-21 07:36:49] HOME_URL="https://www.centos.org/"
[2025-12-21 07:36:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-21 07:36:49] 
[2025-12-21 07:36:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-21 07:36:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-21 07:36:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-21 07:36:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-21 07:36:49] 
[2025-12-21 07:36:49] 2025-12-21 06:36:19,040 | INFO     | ***************************************
[2025-12-21 07:36:49] 2025-12-21 06:36:19,543 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-21 07:36:49] 2025-12-21 06:36:19,561 | INFO     | sufficient remaining disk space (240026386432 B)
[2025-12-21 07:36:49] 2025-12-21 06:36:19,561 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-21 07:36:49] 2025-12-21 06:36:19,561 | INFO     | current server update state: UPDATING_FINAL
[2025-12-21 07:36:49] 2025-12-21 06:36:19,561 | INFO     | update_server=False
[2025-12-21 07:36:49] 2025-12-21 06:36:19,561 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-21 07:36:49] 2025-12-21 06:36:19,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-21 07:36:49] 2025-12-21 06:36:19,573 | INFO     | all job control threads have been joined
[2025-12-21 07:36:49] 2025-12-21 06:36:20,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-21 07:36:49] 2025-12-21 06:36:20,070 | INFO     | aborting loop
[2025-12-21 07:36:49] 2025-12-21 06:36:20,158 | INFO     | all data control threads have been joined
[2025-12-21 07:36:49] 2025-12-21 06:36:20,567 | INFO     | [job] retrieve thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:20,567 | INFO     | [job] queue monitor thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:20,572 | INFO     | [data] copytool_in thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:20,578 | INFO     | [job] control thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:20,613 | INFO     | [payload] failed_post thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:20,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-21 07:36:49] 2025-12-21 06:36:20,728 | INFO     | all payload control threads have been joined
[2025-12-21 07:36:49] 2025-12-21 06:36:21,056 | INFO     | [payload] validate_post thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,075 | INFO     | [job] job monitor thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,164 | INFO     | [data] control thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,279 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,318 | INFO     | [payload] execute_payloads thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,332 | INFO     | [job] validate thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,469 | INFO     | [job] create_data_payload thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,538 | INFO     | [payload] validate_pre thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,734 | INFO     | [payload] control thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:21,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-21 07:36:49] 2025-12-21 06:36:22,691 | INFO     | [data] copytool_out thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:25,963 | INFO     | [data] queue_monitor thread has finished
[2025-12-21 07:36:49] 2025-12-21 06:36:34,318 | INFO     | [monitor] cgroup control has ended
[2025-12-21 07:36:49] 2025-12-21 06:36:36,399 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139922279999296)>', '<ExcThread(monitor, started 139921486497536)>']
[2025-12-21 07:36:49] 2025-12-21 06:36:41,424 | INFO     | all workflow threads have been joined
[2025-12-21 07:36:49] 2025-12-21 06:36:41,425 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-21 07:36:49] 2025-12-21 06:36:41,425 | INFO     | traces error code: 0
[2025-12-21 07:36:49] 2025-12-21 06:36:41,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-21 07:36:49] 2025-12-21 06:36:49,665 | INFO     | PID=1501268 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-21 07:36:49] 2025-12-21 06:36:49,665 | INFO     | found 0 job(s) in 20 queues
[2025-12-21 07:36:49] 2025-12-21 06:36:49,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-21 07:36:49] 2025-12-21 06:36:49,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-21 07:36:49] 2025-12-21 06:36:49,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-21 07:36:49] 2025-12-21 06:36:49,665 | INFO     | [monitor] control thread has ended
[2025-12-21 07:36:49] 2025-12-21 06:36:49,743 [wrapper] ==== pilot stdout END ====
[2025-12-21 07:36:49] 2025-12-21 06:36:49,747 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-21 07:36:49] 2025-12-21 06:36:49,751 [wrapper] pilotpid: 1501268
[2025-12-21 07:36:49] 2025-12-21 06:36:49,755 [wrapper] Pilot exit status: 0
[2025-12-21 07:36:49] 2025-12-21 06:36:49,767 [wrapper] pandaids: 6935457066
[2025-12-21 07:36:49] 2025-12-21 06:36:49,789 [wrapper] cleanup supervisor_pilot 1517495 1501269
[2025-12-21 07:36:49] 2025-12-21 06:36:49,793 [wrapper] Test setup, not cleaning
[2025-12-21 07:36:49] 2025-12-21 06:36:49,797 [wrapper] apfmon messages muted
[2025-12-21 07:36:49] 2025-12-21 06:36:49,800 [wrapper] ==== wrapper stdout END ====
[2025-12-21 07:36:49] 2025-12-21 06:36:49,804 [wrapper] ==== wrapper stderr END ====
[2025-12-21 07:36:49]  *** Error codes and diagnostics ***
[2025-12-21 07:36:49]     "exeErrorCode": 0,
[2025-12-21 07:36:49]     "exeErrorDiag": "",
[2025-12-21 07:36:49]     "pilotErrorCode": 0,
[2025-12-21 07:36:49]     "pilotErrorDiag": "",
[2025-12-21 07:36:49]  *** Listing of results directory ***
[2025-12-21 07:36:49] total 433880
[2025-12-21 07:36:49] -rwx------ 1 boinc boinc     36322 Dec 19 17:43 runpilot2-wrapper.sh
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc    579449 Dec 19 17:45 pilot3.tar.gz
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc      5112 Dec 19 17:45 queuedata.json
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc       100 Dec 21 06:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-21 07:36:49] -rwxr-xr-x 1 boinc boinc      7986 Dec 21 06:24 run_atlas
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc       105 Dec 21 06:24 job.xml
[2025-12-21 07:36:49] -rw-r--r-- 2 boinc boinc 254259029 Dec 21 06:24 EVNT.47929390._000065.pool.root.1
[2025-12-21 07:36:49] -rw-r--r-- 2 boinc boinc    592394 Dec 21 06:24 input.tar.gz
[2025-12-21 07:36:49] -rw-r--r-- 2 boinc boinc     15847 Dec 21 06:24 start_atlas.sh
[2025-12-21 07:36:49] drwxrwx--x 2 boinc boinc      4096 Dec 21 06:24 shared
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc         0 Dec 21 06:24 boinc_setup_complete
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc      6377 Dec 21 06:24 init_data.xml
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc         0 Dec 21 06:24 boinc_lockfile
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc      2549 Dec 21 06:24 pandaJob.out
[2025-12-21 07:36:49] -rw------- 1 boinc boinc    988200 Dec 21 06:24 agis_schedconf.cvmfs.json
[2025-12-21 07:36:49] -rw------- 1 boinc boinc   1516240 Dec 21 06:24 agis_ddmendpoints.agis.ALL.json
[2025-12-21 07:36:49] drwx------ 5 boinc boinc      4096 Dec 21 06:24 pilot3
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc       529 Dec 21 07:35 boinc_task_state.xml
[2025-12-21 07:36:49] -rw------- 1 boinc boinc 184312332 Dec 21 07:35 HITS.47929392._001618.pool.root.1
[2025-12-21 07:36:49] -rw------- 1 boinc boinc        95 Dec 21 07:35 pilot_heartbeat.json
[2025-12-21 07:36:49] -rw------- 1 boinc boinc      1017 Dec 21 07:36 memory_monitor_summary.json
[2025-12-21 07:36:49] -rw------- 1 boinc boinc    267036 Dec 21 07:36 log.47929392._001618.job.log.tgz.1
[2025-12-21 07:36:49] -rw------- 1 boinc boinc      7750 Dec 21 07:36 heartbeat.json
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc        27 Dec 21 07:36 wrapper_checkpoint.txt
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc      8192 Dec 21 07:36 boinc_mmap_file
[2025-12-21 07:36:49] -rw------- 1 boinc boinc       747 Dec 21 07:36 pilotlog.txt
[2025-12-21 07:36:49] -rw------- 1 boinc boinc    639733 Dec 21 07:36 log.47929392._001618.job.log.1
[2025-12-21 07:36:49] -rw------- 1 boinc boinc       357 Dec 21 07:36 output.list
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc       620 Dec 21 07:36 runtime_log
[2025-12-21 07:36:49] -rw------- 1 boinc boinc    921600 Dec 21 07:36 result.tar.gz
[2025-12-21 07:36:49] -rw------- 1 boinc boinc       658 Dec 21 07:36 zcZMDmElsq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0SgKDmGvsOPn.diag
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc      8897 Dec 21 07:36 runtime_log.err
[2025-12-21 07:36:49] -rw-r--r-- 1 boinc boinc     21766 Dec 21 07:36 stderr.txt
[2025-12-21 07:36:49] HITS file was successfully produced:
[2025-12-21 07:36:49] -rw------- 1 boinc boinc 184312332 Dec 21 07:35 shared/HITS.pool.root.1
[2025-12-21 07:36:49]  *** Contents of shared directory: ***
[2025-12-21 07:36:49] total 429800
[2025-12-21 07:36:49] -rw-r--r-- 2 boinc boinc 254259029 Dec 21 06:24 ATLAS.root_0
[2025-12-21 07:36:49] -rw-r--r-- 2 boinc boinc    592394 Dec 21 06:24 input.tar.gz
[2025-12-21 07:36:49] -rw-r--r-- 2 boinc boinc     15847 Dec 21 06:24 start_atlas.sh
[2025-12-21 07:36:49] -rw------- 1 boinc boinc 184312332 Dec 21 07:35 HITS.pool.root.1
[2025-12-21 07:36:49] -rw------- 1 boinc boinc    921600 Dec 21 07:36 result.tar.gz
07:36:50 (1497470): run_atlas exited; CPU time 16270.236922
07:36:50 (1497470): called boinc_finish(0)

</stderr_txt>
]]>

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