Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:32:45 (660124): wrapper (7.7.26015): starting
07:32:45 (660124): wrapper: running run_atlas (--nthreads 4)
[2025-12-21 07:32:45] Arguments: --nthreads 4
[2025-12-21 07:32:45] Threads: 4
[2025-12-21 07:32:45] Checking for CVMFS
[2025-12-21 07:32:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-21 07:32:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-21 07:32:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-21 07:32:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-21 07:32:45] 2.9.2.0 4066 2937 91896 154252 0 57 26407116 36864001 0 130560 0 1761299 99.989 102547 3273 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-21 07:32:45] CVMFS is ok
[2025-12-21 07:32:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-21 07:32:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-21 07:32:45] Further information can be found at the LHC@home message board.
[2025-12-21 07:32:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-21 07:32:45] Checking for apptainer binary...
[2025-12-21 07:32:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-21 07:32:45] Running /usr/bin/apptainer --version
[2025-12-21 07:32:45] apptainer version 1.4.1-1.1
[2025-12-21 07:32:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-21 07:32:45] atlasA237
[2025-12-21 07:32:45] apptainer works
[2025-12-21 07:32:45] Set ATHENA_PROC_NUMBER=4
[2025-12-21 07:32:45] Set ATHENA_CORE_NUMBER=4
[2025-12-21 07:32:45] Starting ATLAS job with PandaID=6935002921
[2025-12-21 07:32:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-21 16:27:41]  *** The last 200 lines of the pilot log: ***
[2025-12-21 16:27:41] 2025-12-21 15:26:47,516 | INFO     | will attempt to kill all subprocesses of pid=670476
[2025-12-21 16:27:41] 2025-12-21 15:26:47,561 | INFO     | process IDs to be killed: [670476] (in reverse order)
[2025-12-21 16:27:41] 2025-12-21 15:26:47,591 | WARNING  | found no corresponding commands to process id(s)
[2025-12-21 16:27:41] 2025-12-21 15:26:47,591 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-21 16:27:41] 2025-12-21 15:26:47,593 | INFO     | did not find any defunct processes belonging to 670476
[2025-12-21 16:27:41] 2025-12-21 15:26:47,594 | INFO     | did not find any defunct processes belonging to 670476
[2025-12-21 16:27:41] 2025-12-21 15:26:47,594 | INFO     | ready for new job
[2025-12-21 16:27:41] 2025-12-21 15:26:47,594 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-21 16:27:41] 2025-12-21 15:26:47,595 | INFO     | ***************************************
[2025-12-21 16:27:41] 2025-12-21 15:26:47,595 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-21 16:27:41] 2025-12-21 15:26:47,595 | INFO     | ***************************************
[2025-12-21 16:27:41] 2025-12-21 15:26:47,595 | INFO     | 
[2025-12-21 16:27:41] 2025-12-21 15:26:47,596 | INFO     | architecture information:
[2025-12-21 16:27:41] 2025-12-21 15:26:47,596 | INFO     | executing command: cat /etc/os-release
[2025-12-21 16:27:41] 2025-12-21 15:26:47,609 | INFO     | cat /etc/os-release:
[2025-12-21 16:27:41] NAME="CentOS Linux"
[2025-12-21 16:27:41] VERSION="7 (Core)"
[2025-12-21 16:27:41] ID="centos"
[2025-12-21 16:27:41] ID_LIKE="rhel fedora"
[2025-12-21 16:27:41] VERSION_ID="7"
[2025-12-21 16:27:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-21 16:27:41] ANSI_COLOR="0;31"
[2025-12-21 16:27:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-21 16:27:41] HOME_URL="https://www.centos.org/"
[2025-12-21 16:27:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-21 16:27:41] 
[2025-12-21 16:27:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-21 16:27:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-21 16:27:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-21 16:27:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-21 16:27:41] 
[2025-12-21 16:27:41] 2025-12-21 15:26:47,609 | INFO     | ***************************************
[2025-12-21 16:27:41] 2025-12-21 15:26:48,112 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-21 16:27:41] 2025-12-21 15:26:48,129 | INFO     | sufficient remaining disk space (331890032640 B)
[2025-12-21 16:27:41] 2025-12-21 15:26:48,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-21 16:27:41] 2025-12-21 15:26:48,129 | INFO     | current server update state: UPDATING_FINAL
[2025-12-21 16:27:41] 2025-12-21 15:26:48,130 | INFO     | update_server=False
[2025-12-21 16:27:41] 2025-12-21 15:26:48,130 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-21 16:27:41] 2025-12-21 15:26:48,130 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-21 16:27:41] 2025-12-21 15:26:48,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-21 16:27:41] 2025-12-21 15:26:48,571 | INFO     | all payload control threads have been joined
[2025-12-21 16:27:41] 2025-12-21 15:26:49,066 | INFO     | all data control threads have been joined
[2025-12-21 16:27:41] 2025-12-21 15:26:49,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-21 16:27:41] 2025-12-21 15:26:49,088 | INFO     | aborting loop
[2025-12-21 16:27:41] 2025-12-21 15:26:49,135 | INFO     | [job] retrieve thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:49,136 | INFO     | [job] queue monitor thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:49,305 | INFO     | [payload] execute_payloads thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:49,400 | INFO     | all job control threads have been joined
[2025-12-21 16:27:41] 2025-12-21 15:26:49,551 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-21 16:27:41] 2025-12-21 15:26:49,577 | INFO     | [payload] control thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:49,577 | INFO     | [payload] failed_post thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:49,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:49,845 | INFO     | [job] validate thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:49,921 | INFO     | [payload] validate_pre thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:50,044 | INFO     | [payload] validate_post thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:50,065 | INFO     | [job] create_data_payload thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:50,072 | INFO     | [data] control thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:50,093 | INFO     | [job] job monitor thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:50,400 | INFO     | [data] copytool_in thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:50,405 | INFO     | [job] control thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:51,557 | INFO     | [data] copytool_out thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:26:52,137 | INFO     | [data] queue_monitor thread has finished
[2025-12-21 16:27:41] 2025-12-21 15:27:18,964 | INFO     | PID=663913 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-21 16:27:41] 2025-12-21 15:27:18,964 | INFO     | found 0 job(s) in 20 queues
[2025-12-21 16:27:41] 2025-12-21 15:27:18,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-21 16:27:41] 2025-12-21 15:27:18,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-21 16:27:41] 2025-12-21 15:27:35,220 | INFO     | [monitor] cgroup control has ended
[2025-12-21 16:27:41] 2025-12-21 15:27:36,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140713476970304)>', '<ExcThread(monitor, started 140712255420160)>']
[2025-12-21 16:27:41] 2025-12-21 15:27:37,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-21 16:27:41] 2025-12-21 15:27:37,061 | INFO     | [monitor] control thread has ended
[2025-12-21 16:27:41] 2025-12-21 15:27:41,294 | INFO     | all workflow threads have been joined
[2025-12-21 16:27:41] 2025-12-21 15:27:41,295 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-21 16:27:41] 2025-12-21 15:27:41,295 | INFO     | traces error code: 0
[2025-12-21 16:27:41] 2025-12-21 15:27:41,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-21 16:27:41] 2025-12-21 15:27:41,364 [wrapper] ==== pilot stdout END ====
[2025-12-21 16:27:41] 2025-12-21 15:27:41,368 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-21 16:27:41] 2025-12-21 15:27:41,372 [wrapper] pilotpid: 663913
[2025-12-21 16:27:41] 2025-12-21 15:27:41,376 [wrapper] Pilot exit status: 0
[2025-12-21 16:27:41] 2025-12-21 15:27:41,386 [wrapper] pandaids: 6935002921
[2025-12-21 16:27:41] 2025-12-21 15:27:41,407 [wrapper] cleanup supervisor_pilot  725033 663914
[2025-12-21 16:27:41] 2025-12-21 15:27:41,411 [wrapper] Test setup, not cleaning
[2025-12-21 16:27:41] 2025-12-21 15:27:41,414 [wrapper] apfmon messages muted
[2025-12-21 16:27:41] 2025-12-21 15:27:41,417 [wrapper] ==== wrapper stdout END ====
[2025-12-21 16:27:41] 2025-12-21 15:27:41,421 [wrapper] ==== wrapper stderr END ====
[2025-12-21 16:27:41]  *** Error codes and diagnostics ***
[2025-12-21 16:27:41]     "exeErrorCode": 0,
[2025-12-21 16:27:41]     "exeErrorDiag": "",
[2025-12-21 16:27:41]     "pilotErrorCode": 0,
[2025-12-21 16:27:41]     "pilotErrorDiag": "",
[2025-12-21 16:27:41]  *** Listing of results directory ***
[2025-12-21 16:27:41] total 1388456
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc    579449 Dec 19 06:06 pilot3.tar.gz
[2025-12-21 16:27:41] -rwx------ 1 boinc boinc     36322 Dec 19 06:07 runpilot2-wrapper.sh
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc      5112 Dec 19 06:08 queuedata.json
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc       100 Dec 21 07:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-21 16:27:41] -rwxr-xr-x 1 boinc boinc      7986 Dec 21 07:32 run_atlas
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc       105 Dec 21 07:32 job.xml
[2025-12-21 16:27:41] -rw-r--r-- 2 boinc boinc 413502297 Dec 21 07:32 EVNT.47961014._000006.pool.root.1
[2025-12-21 16:27:41] -rw-r--r-- 2 boinc boinc    592592 Dec 21 07:32 input.tar.gz
[2025-12-21 16:27:41] -rw-r--r-- 2 boinc boinc     15847 Dec 21 07:32 start_atlas.sh
[2025-12-21 16:27:41] drwxrwx--x 2 boinc boinc      4096 Dec 21 07:32 shared
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc         0 Dec 21 07:32 boinc_setup_complete
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc      6372 Dec 21 07:32 init_data.xml
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc         0 Dec 21 07:32 boinc_lockfile
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc      2875 Dec 21 07:32 pandaJob.out
[2025-12-21 16:27:41] -rw------- 1 boinc boinc    988176 Dec 21 07:32 agis_schedconf.cvmfs.json
[2025-12-21 16:27:41] drwx------ 5 boinc boinc      4096 Dec 21 07:32 pilot3
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc       532 Dec 21 16:22 boinc_task_state.xml
[2025-12-21 16:27:41] -rw------- 1 boinc boinc 992694340 Dec 21 16:26 HITS.47961022._000052.pool.root.1
[2025-12-21 16:27:41] -rw------- 1 boinc boinc      1026 Dec 21 16:26 memory_monitor_summary.json
[2025-12-21 16:27:41] -rw------- 1 boinc boinc   1516240 Dec 21 16:26 agis_ddmendpoints.agis.ALL.json
[2025-12-21 16:27:41] -rw------- 1 boinc boinc   1338138 Dec 21 16:26 log.47961022._000052.job.log.tgz.1
[2025-12-21 16:27:41] -rw------- 1 boinc boinc        95 Dec 21 16:26 pilot_heartbeat.json
[2025-12-21 16:27:41] -rw------- 1 boinc boinc      8576 Dec 21 16:26 heartbeat.json
[2025-12-21 16:27:41] -rw------- 1 boinc boinc      4751 Dec 21 16:27 pilotlog.txt
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc      8192 Dec 21 16:27 boinc_mmap_file
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc        29 Dec 21 16:27 wrapper_checkpoint.txt
[2025-12-21 16:27:41] -rw------- 1 boinc boinc   4497700 Dec 21 16:27 log.47961022._000052.job.log.1
[2025-12-21 16:27:41] -rw------- 1 boinc boinc       353 Dec 21 16:27 output.list
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc       620 Dec 21 16:27 runtime_log
[2025-12-21 16:27:41] -rw------- 1 boinc boinc   5857280 Dec 21 16:27 result.tar.gz
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc      8913 Dec 21 16:27 runtime_log.err
[2025-12-21 16:27:41] -rw------- 1 boinc boinc       669 Dec 21 16:27 PPaLDm2shq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmReaKDmg1cYnm.diag
[2025-12-21 16:27:41] -rw-r--r-- 1 boinc boinc     10188 Dec 21 16:27 stderr.txt
[2025-12-21 16:27:41] HITS file was successfully produced:
[2025-12-21 16:27:41] -rw------- 1 boinc boinc 992694340 Dec 21 16:26 shared/HITS.pool.root.1
[2025-12-21 16:27:41]  *** Contents of shared directory: ***
[2025-12-21 16:27:41] total 1379568
[2025-12-21 16:27:41] -rw-r--r-- 2 boinc boinc 413502297 Dec 21 07:32 ATLAS.root_0
[2025-12-21 16:27:41] -rw-r--r-- 2 boinc boinc    592592 Dec 21 07:32 input.tar.gz
[2025-12-21 16:27:41] -rw-r--r-- 2 boinc boinc     15847 Dec 21 07:32 start_atlas.sh
[2025-12-21 16:27:41] -rw------- 1 boinc boinc 992694340 Dec 21 16:26 HITS.pool.root.1
[2025-12-21 16:27:41] -rw------- 1 boinc boinc   5857280 Dec 21 16:27 result.tar.gz
16:27:43 (660124): run_atlas exited; CPU time 126158.266493
16:27:43 (660124): called boinc_finish(0)

</stderr_txt>
]]>

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