Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:30:26 (3654428): wrapper (7.7.26015): starting
21:30:26 (3654428): wrapper: running run_atlas (--nthreads 4)
[2025-12-20 21:30:26] Arguments: --nthreads 4
[2025-12-20 21:30:26] Threads: 4
[2025-12-20 21:30:26] Checking for CVMFS
[2025-12-20 21:30:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-20 21:30:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-20 21:30:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-20 21:30:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-20 21:30:26] 2.9.2.0 639704 10835 107104 154237 3 56 20461166 36864000 0 130560 0 7367010 99.990 391675 8317 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-20 21:30:26] CVMFS is ok
[2025-12-20 21:30:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-20 21:30:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-20 21:30:26] Further information can be found at the LHC@home message board.
[2025-12-20 21:30:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-20 21:30:26] Checking for apptainer binary...
[2025-12-20 21:30:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-20 21:30:26] Running /usr/bin/apptainer --version
[2025-12-20 21:30:26] apptainer version 1.4.1-1.1
[2025-12-20 21:30:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-20 21:30:26] thA309
[2025-12-20 21:30:26] apptainer works
[2025-12-20 21:30:26] Set ATHENA_PROC_NUMBER=4
[2025-12-20 21:30:26] Set ATHENA_CORE_NUMBER=4
[2025-12-20 21:30:26] Starting ATLAS job with PandaID=6935455019
[2025-12-20 21:30:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-20 22:42:59]  *** The last 200 lines of the pilot log: ***
[2025-12-20 22:42:59] 2025-12-20 21:42:29,254 | INFO     | cat /etc/os-release:
[2025-12-20 22:42:59] NAME="CentOS Linux"
[2025-12-20 22:42:59] VERSION="7 (Core)"
[2025-12-20 22:42:59] ID="centos"
[2025-12-20 22:42:59] ID_LIKE="rhel fedora"
[2025-12-20 22:42:59] VERSION_ID="7"
[2025-12-20 22:42:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-20 22:42:59] ANSI_COLOR="0;31"
[2025-12-20 22:42:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-20 22:42:59] HOME_URL="https://www.centos.org/"
[2025-12-20 22:42:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-20 22:42:59] 
[2025-12-20 22:42:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-20 22:42:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-20 22:42:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-20 22:42:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-20 22:42:59] 
[2025-12-20 22:42:59] 2025-12-20 21:42:29,254 | INFO     | ***************************************
[2025-12-20 22:42:59] 2025-12-20 21:42:29,757 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-20 22:42:59] 2025-12-20 21:42:29,776 | INFO     | sufficient remaining disk space (238469251072 B)
[2025-12-20 22:42:59] 2025-12-20 21:42:29,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-20 22:42:59] 2025-12-20 21:42:29,776 | INFO     | current server update state: UPDATING_FINAL
[2025-12-20 22:42:59] 2025-12-20 21:42:29,777 | INFO     | update_server=False
[2025-12-20 22:42:59] 2025-12-20 21:42:29,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-20 22:42:59] 2025-12-20 21:42:29,777 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-20 22:42:59] 2025-12-20 21:42:29,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-20 22:42:59] 2025-12-20 21:42:29,914 | INFO     | all payload control threads have been joined
[2025-12-20 22:42:59] 2025-12-20 21:42:29,982 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-20 22:42:59] 2025-12-20 21:42:29,982 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-20 22:42:59] 2025-12-20 21:42:29,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-20 22:42:59] 2025-12-20 21:42:29,982 | INFO     | will abort loop
[2025-12-20 22:42:59] 2025-12-20 21:42:30,744 | INFO     | all data control threads have been joined
[2025-12-20 22:42:59] 2025-12-20 21:42:30,780 | INFO     | [job] retrieve thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:30,782 | INFO     | [job] queue monitor thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:30,901 | INFO     | all job control threads have been joined
[2025-12-20 22:42:59] 2025-12-20 21:42:30,920 | INFO     | [payload] control thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:30,988 | INFO     | [job] job monitor thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:31,132 | INFO     | [data] copytool_in thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:31,281 | INFO     | [payload] execute_payloads thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:31,468 | INFO     | [payload] failed_post thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:31,750 | INFO     | [data] control thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:31,805 | INFO     | [data] copytool_out thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:31,883 | INFO     | [job] validate thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:31,907 | INFO     | [job] control thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:31,980 | INFO     | [job] create_data_payload thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:32,014 | INFO     | [payload] validate_post thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:32,095 | INFO     | [payload] validate_pre thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:32,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-20 22:42:59] 2025-12-20 21:42:36,543 | INFO     | [data] queue_monitor thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:39,864 | INFO     | [monitor] cgroup control has ended
[2025-12-20 22:42:59] 2025-12-20 21:42:40,000 | INFO     | job.realtimelogging is not enabled
[2025-12-20 22:42:59] 2025-12-20 21:42:41,006 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-20 22:42:59] 2025-12-20 21:42:43,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139771572475712)>', '<ExcThread(monitor, started 139770550269696)>']
[2025-12-20 22:42:59] 2025-12-20 21:42:48,068 | INFO     | all workflow threads have been joined
[2025-12-20 22:42:59] 2025-12-20 21:42:48,068 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-20 22:42:59] 2025-12-20 21:42:48,069 | INFO     | traces error code: 0
[2025-12-20 22:42:59] 2025-12-20 21:42:48,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-20 22:42:59] 2025-12-20 21:42:59,380 | INFO     | PID=3658229 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-20 22:42:59] 2025-12-20 21:42:59,380 | INFO     | found 0 job(s) in 20 queues
[2025-12-20 22:42:59] 2025-12-20 21:42:59,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-20 22:42:59] 2025-12-20 21:42:59,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-20 22:42:59] 2025-12-20 21:42:59,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-20 22:42:59] 2025-12-20 21:42:59,381 | INFO     | [monitor] control thread has ended
[2025-12-20 22:42:59] 2025-12-20 21:42:59,460 [wrapper] ==== pilot stdout END ====
[2025-12-20 22:42:59] 2025-12-20 21:42:59,464 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-20 22:42:59] 2025-12-20 21:42:59,469 [wrapper] pilotpid: 3658229
[2025-12-20 22:42:59] 2025-12-20 21:42:59,472 [wrapper] Pilot exit status: 0
[2025-12-20 22:42:59] 2025-12-20 21:42:59,484 [wrapper] pandaids: 6935455019
[2025-12-20 22:42:59] 2025-12-20 21:42:59,508 [wrapper] cleanup supervisor_pilot 3676627 3658230
[2025-12-20 22:42:59] 2025-12-20 21:42:59,512 [wrapper] Test setup, not cleaning
[2025-12-20 22:42:59] 2025-12-20 21:42:59,516 [wrapper] apfmon messages muted
[2025-12-20 22:42:59] 2025-12-20 21:42:59,520 [wrapper] ==== wrapper stdout END ====
[2025-12-20 22:42:59] 2025-12-20 21:42:59,524 [wrapper] ==== wrapper stderr END ====
[2025-12-20 22:42:59]  *** Error codes and diagnostics ***
[2025-12-20 22:42:59]     "exeErrorCode": 0,
[2025-12-20 22:42:59]     "exeErrorDiag": "",
[2025-12-20 22:42:59]     "pilotErrorCode": 0,
[2025-12-20 22:42:59]     "pilotErrorDiag": "",
[2025-12-20 22:42:59]  *** Listing of results directory ***
[2025-12-20 22:42:59] total 435120
[2025-12-20 22:42:59] -rwx------ 1 boinc boinc     36322 Dec 19 14:37 runpilot2-wrapper.sh
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc    579449 Dec 19 14:38 pilot3.tar.gz
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc      5112 Dec 19 14:41 queuedata.json
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc       100 Dec 20 21:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-20 22:42:59] -rwxr-xr-x 1 boinc boinc      7986 Dec 20 21:30 run_atlas
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc       105 Dec 20 21:30 job.xml
[2025-12-20 22:42:59] -rw-r--r-- 2 boinc boinc 255640472 Dec 20 21:30 EVNT.47929286._000063.pool.root.1
[2025-12-20 22:42:59] -rw-r--r-- 2 boinc boinc    592395 Dec 20 21:30 input.tar.gz
[2025-12-20 22:42:59] -rw-r--r-- 2 boinc boinc     15847 Dec 20 21:30 start_atlas.sh
[2025-12-20 22:42:59] drwxrwx--x 2 boinc boinc      4096 Dec 20 21:30 shared
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc         0 Dec 20 21:30 boinc_setup_complete
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc      6377 Dec 20 21:30 init_data.xml
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc         0 Dec 20 21:30 boinc_lockfile
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc      2547 Dec 20 21:30 pandaJob.out
[2025-12-20 22:42:59] -rw------- 1 boinc boinc    988154 Dec 20 21:30 agis_schedconf.cvmfs.json
[2025-12-20 22:42:59] -rw------- 1 boinc boinc   1516240 Dec 20 21:30 agis_ddmendpoints.agis.ALL.json
[2025-12-20 22:42:59] drwx------ 5 boinc boinc      4096 Dec 20 21:30 pilot3
[2025-12-20 22:42:59] -rw------- 1 boinc boinc 184219443 Dec 20 22:42 HITS.47929288._001513.pool.root.1
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc       529 Dec 20 22:42 boinc_task_state.xml
[2025-12-20 22:42:59] -rw------- 1 boinc boinc      1019 Dec 20 22:42 memory_monitor_summary.json
[2025-12-20 22:42:59] -rw------- 1 boinc boinc    260952 Dec 20 22:42 log.47929288._001513.job.log.tgz.1
[2025-12-20 22:42:59] -rw------- 1 boinc boinc      7757 Dec 20 22:42 heartbeat.json
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc        27 Dec 20 22:42 wrapper_checkpoint.txt
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc      8192 Dec 20 22:42 boinc_mmap_file
[2025-12-20 22:42:59] -rw------- 1 boinc boinc       747 Dec 20 22:42 pilotlog.txt
[2025-12-20 22:42:59] -rw------- 1 boinc boinc        95 Dec 20 22:42 pilot_heartbeat.json
[2025-12-20 22:42:59] -rw------- 1 boinc boinc    640235 Dec 20 22:42 log.47929288._001513.job.log.1
[2025-12-20 22:42:59] -rw------- 1 boinc boinc       357 Dec 20 22:42 output.list
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc       620 Dec 20 22:42 runtime_log
[2025-12-20 22:42:59] -rw------- 1 boinc boinc    921600 Dec 20 22:42 result.tar.gz
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc      8897 Dec 20 22:42 runtime_log.err
[2025-12-20 22:42:59] -rw------- 1 boinc boinc       658 Dec 20 22:42 nWkKDmlqpq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSTbKDmjxEwkn.diag
[2025-12-20 22:42:59] -rw-r--r-- 1 boinc boinc      9112 Dec 20 22:42 stderr.txt
[2025-12-20 22:42:59] HITS file was successfully produced:
[2025-12-20 22:42:59] -rw------- 1 boinc boinc 184219443 Dec 20 22:42 shared/HITS.pool.root.1
[2025-12-20 22:42:59]  *** Contents of shared directory: ***
[2025-12-20 22:42:59] total 431060
[2025-12-20 22:42:59] -rw-r--r-- 2 boinc boinc 255640472 Dec 20 21:30 ATLAS.root_0
[2025-12-20 22:42:59] -rw-r--r-- 2 boinc boinc    592395 Dec 20 21:30 input.tar.gz
[2025-12-20 22:42:59] -rw-r--r-- 2 boinc boinc     15847 Dec 20 21:30 start_atlas.sh
[2025-12-20 22:42:59] -rw------- 1 boinc boinc 184219443 Dec 20 22:42 HITS.pool.root.1
[2025-12-20 22:42:59] -rw------- 1 boinc boinc    921600 Dec 20 22:42 result.tar.gz
22:43:01 (3654428): run_atlas exited; CPU time 16208.971724
22:43:01 (3654428): called boinc_finish(0)

</stderr_txt>
]]>

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