Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:47:43 (2984206): wrapper (7.7.26015): starting
16:47:43 (2984206): wrapper: running run_atlas (--nthreads 3)
[2025-12-20 16:47:43] Arguments: --nthreads 3
[2025-12-20 16:47:43] Threads: 3
[2025-12-20 16:47:43] Checking for CVMFS
[2025-12-20 16:47:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-20 16:47:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-20 16:47:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-20 16:47:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-20 16:47:43] 2.9.2.0 415797 10170 90832 154230 3 57 21343038 36864001 0 130560 0 6613092 99.990 363087 7050 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-20 16:47:43] CVMFS is ok
[2025-12-20 16:47:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-20 16:47:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-20 16:47:43] Further information can be found at the LHC@home message board.
[2025-12-20 16:47:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-20 16:47:43] Checking for apptainer binary...
[2025-12-20 16:47:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-20 16:47:43] Running /usr/bin/apptainer --version
[2025-12-20 16:47:43] apptainer version 1.4.1-1.1
[2025-12-20 16:47:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-20 16:47:43] magicA246a
[2025-12-20 16:47:43] apptainer works
[2025-12-20 16:47:43] Set ATHENA_PROC_NUMBER=3
[2025-12-20 16:47:43] Set ATHENA_CORE_NUMBER=3
[2025-12-20 16:47:43] Starting ATLAS job with PandaID=6935288612
[2025-12-20 16:47:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-20 18:09:58]  *** The last 200 lines of the pilot log: ***
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-20 18:09:58] 2025-12-20 17:09:24,455 | INFO     | job 6935288612 has completed (purged errors)
[2025-12-20 18:09:58] 2025-12-20 17:09:24,456 | INFO     | overall cleanup function is called
[2025-12-20 18:09:58] 2025-12-20 17:09:25,462 | INFO     | --- collectZombieJob: --- 10, [2994376]
[2025-12-20 18:09:58] 2025-12-20 17:09:25,462 | INFO     | zombie collector waiting for pid 2994376
[2025-12-20 18:09:58] 2025-12-20 17:09:25,462 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-20 18:09:58] 2025-12-20 17:09:25,462 | INFO     | collected zombie processes
[2025-12-20 18:09:58] 2025-12-20 17:09:25,463 | INFO     | will attempt to kill all subprocesses of pid=2994376
[2025-12-20 18:09:58] 2025-12-20 17:09:25,520 | INFO     | process IDs to be killed: [2994376] (in reverse order)
[2025-12-20 18:09:58] 2025-12-20 17:09:25,549 | WARNING  | found no corresponding commands to process id(s)
[2025-12-20 18:09:58] 2025-12-20 17:09:25,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-20 18:09:58] 2025-12-20 17:09:25,551 | INFO     | did not find any defunct processes belonging to 2994376
[2025-12-20 18:09:58] 2025-12-20 17:09:25,553 | INFO     | did not find any defunct processes belonging to 2994376
[2025-12-20 18:09:58] 2025-12-20 17:09:25,553 | INFO     | ready for new job
[2025-12-20 18:09:58] 2025-12-20 17:09:25,553 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-20 18:09:58] 2025-12-20 17:09:25,554 | INFO     | ***************************************
[2025-12-20 18:09:58] 2025-12-20 17:09:25,554 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-20 18:09:58] 2025-12-20 17:09:25,554 | INFO     | ***************************************
[2025-12-20 18:09:58] 2025-12-20 17:09:25,554 | INFO     | 
[2025-12-20 18:09:58] 2025-12-20 17:09:25,554 | INFO     | architecture information:
[2025-12-20 18:09:58] 2025-12-20 17:09:25,554 | INFO     | executing command: cat /etc/os-release
[2025-12-20 18:09:58] 2025-12-20 17:09:25,563 | INFO     | cat /etc/os-release:
[2025-12-20 18:09:58] NAME="CentOS Linux"
[2025-12-20 18:09:58] VERSION="7 (Core)"
[2025-12-20 18:09:58] ID="centos"
[2025-12-20 18:09:58] ID_LIKE="rhel fedora"
[2025-12-20 18:09:58] VERSION_ID="7"
[2025-12-20 18:09:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-20 18:09:58] ANSI_COLOR="0;31"
[2025-12-20 18:09:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-20 18:09:58] HOME_URL="https://www.centos.org/"
[2025-12-20 18:09:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-20 18:09:58] 
[2025-12-20 18:09:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-20 18:09:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-20 18:09:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-20 18:09:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-20 18:09:58] 
[2025-12-20 18:09:58] 2025-12-20 17:09:25,563 | INFO     | ***************************************
[2025-12-20 18:09:58] 2025-12-20 17:09:26,066 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-20 18:09:58] 2025-12-20 17:09:26,078 | INFO     | sufficient remaining disk space (282901610496 B)
[2025-12-20 18:09:58] 2025-12-20 17:09:26,078 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-20 18:09:58] 2025-12-20 17:09:26,078 | INFO     | current server update state: UPDATING_FINAL
[2025-12-20 18:09:58] 2025-12-20 17:09:26,078 | INFO     | update_server=False
[2025-12-20 18:09:58] 2025-12-20 17:09:26,078 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-20 18:09:58] 2025-12-20 17:09:26,078 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-20 18:09:58] 2025-12-20 17:09:26,151 | INFO     | all job control threads have been joined
[2025-12-20 18:09:58] 2025-12-20 17:09:26,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-20 18:09:58] 2025-12-20 17:09:26,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-20 18:09:58] 2025-12-20 17:09:26,678 | INFO     | aborting loop
[2025-12-20 18:09:58] 2025-12-20 17:09:26,855 | INFO     | all data control threads have been joined
[2025-12-20 18:09:58] 2025-12-20 17:09:27,084 | INFO     | [job] queue monitor thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:27,084 | INFO     | [job] retrieve thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:27,156 | INFO     | [job] control thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:27,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-20 18:09:58] 2025-12-20 17:09:27,267 | INFO     | all payload control threads have been joined
[2025-12-20 18:09:58] 2025-12-20 17:09:27,629 | INFO     | [payload] execute_payloads thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:27,684 | INFO     | [job] job monitor thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:27,860 | INFO     | [data] copytool_in thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:27,861 | INFO     | [data] control thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:28,056 | INFO     | [payload] validate_post thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:28,272 | INFO     | [payload] control thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:28,304 | INFO     | [job] validate thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:28,334 | INFO     | [job] create_data_payload thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:28,376 | INFO     | [payload] validate_pre thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:28,436 | INFO     | [payload] failed_post thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:28,460 | INFO     | [data] copytool_out thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:31,248 | INFO     | [data] queue_monitor thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:36,314 | INFO     | job.realtimelogging is not enabled
[2025-12-20 18:09:58] 2025-12-20 17:09:37,320 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-20 18:09:58] 2025-12-20 17:09:53,587 | INFO     | [monitor] cgroup control has ended
[2025-12-20 18:09:58] 2025-12-20 17:09:53,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337617483584)>', '<ExcThread(monitor, started 140337337042688)>']
[2025-12-20 18:09:58] 2025-12-20 17:09:55,942 | INFO     | PID=2987931 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-20 18:09:58] 2025-12-20 17:09:55,942 | INFO     | found 0 job(s) in 20 queues
[2025-12-20 18:09:58] 2025-12-20 17:09:55,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-20 18:09:58] 2025-12-20 17:09:55,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-20 18:09:58] 2025-12-20 17:09:55,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-20 18:09:58] 2025-12-20 17:09:55,942 | INFO     | [monitor] control thread has ended
[2025-12-20 18:09:58] 2025-12-20 17:09:58,813 | INFO     | all workflow threads have been joined
[2025-12-20 18:09:58] 2025-12-20 17:09:58,813 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-20 18:09:58] 2025-12-20 17:09:58,813 | INFO     | traces error code: 0
[2025-12-20 18:09:58] 2025-12-20 17:09:58,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-20 18:09:58] 2025-12-20 17:09:58,866 [wrapper] ==== pilot stdout END ====
[2025-12-20 18:09:58] 2025-12-20 17:09:58,868 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-20 18:09:58] 2025-12-20 17:09:58,871 [wrapper] pilotpid: 2987931
[2025-12-20 18:09:58] 2025-12-20 17:09:58,873 [wrapper] Pilot exit status: 0
[2025-12-20 18:09:58] 2025-12-20 17:09:58,880 [wrapper] pandaids: 6935288612
[2025-12-20 18:09:58] 2025-12-20 17:09:58,899 [wrapper] cleanup supervisor_pilot 3007110 2987932
[2025-12-20 18:09:58] 2025-12-20 17:09:58,902 [wrapper] Test setup, not cleaning
[2025-12-20 18:09:58] 2025-12-20 17:09:58,904 [wrapper] apfmon messages muted
[2025-12-20 18:09:58] 2025-12-20 17:09:58,906 [wrapper] ==== wrapper stdout END ====
[2025-12-20 18:09:58] 2025-12-20 17:09:58,908 [wrapper] ==== wrapper stderr END ====
[2025-12-20 18:09:58]  *** Error codes and diagnostics ***
[2025-12-20 18:09:58]     "exeErrorCode": 0,
[2025-12-20 18:09:58]     "exeErrorDiag": "",
[2025-12-20 18:09:58]     "pilotErrorCode": 0,
[2025-12-20 18:09:58]     "pilotErrorDiag": "",
[2025-12-20 18:09:58]  *** Listing of results directory ***
[2025-12-20 18:09:58] total 432464
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc      5112 Dec 19 14:33 queuedata.json
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc    579449 Dec 19 14:33 pilot3.tar.gz
[2025-12-20 18:09:58] -rwx------ 1 boinc boinc     36322 Dec 19 14:33 runpilot2-wrapper.sh
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc       100 Dec 20 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-20 18:09:58] -rwxr-xr-x 1 boinc boinc      7986 Dec 20 16:47 run_atlas
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc       105 Dec 20 16:47 job.xml
[2025-12-20 18:09:58] -rw-r--r-- 2 boinc boinc 252668422 Dec 20 16:47 EVNT.47929286._000019.pool.root.1
[2025-12-20 18:09:58] -rw-r--r-- 2 boinc boinc    592391 Dec 20 16:47 input.tar.gz
[2025-12-20 18:09:58] -rw-r--r-- 2 boinc boinc     15847 Dec 20 16:47 start_atlas.sh
[2025-12-20 18:09:58] drwxrwx--x 2 boinc boinc      4096 Dec 20 16:47 shared
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc         0 Dec 20 16:47 boinc_setup_complete
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc      6447 Dec 20 16:47 init_data.xml
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc         0 Dec 20 16:47 boinc_lockfile
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc      2546 Dec 20 16:47 pandaJob.out
[2025-12-20 18:09:58] -rw------- 1 boinc boinc    988154 Dec 20 16:47 agis_schedconf.cvmfs.json
[2025-12-20 18:09:58] -rw------- 1 boinc boinc   1516240 Dec 20 16:47 agis_ddmendpoints.agis.ALL.json
[2025-12-20 18:09:58] drwx------ 5 boinc boinc      4096 Dec 20 16:47 pilot3
[2025-12-20 18:09:58] -rw------- 1 boinc boinc 184319069 Dec 20 18:09 HITS.47929288._000364.pool.root.1
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc       529 Dec 20 18:09 boinc_task_state.xml
[2025-12-20 18:09:58] -rw------- 1 boinc boinc      1024 Dec 20 18:09 memory_monitor_summary.json
[2025-12-20 18:09:58] -rw------- 1 boinc boinc        95 Dec 20 18:09 pilot_heartbeat.json
[2025-12-20 18:09:58] -rw------- 1 boinc boinc    254277 Dec 20 18:09 log.47929288._000364.job.log.tgz.1
[2025-12-20 18:09:58] -rw------- 1 boinc boinc      7773 Dec 20 18:09 heartbeat.json
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc      8192 Dec 20 18:09 boinc_mmap_file
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc        27 Dec 20 18:09 wrapper_checkpoint.txt
[2025-12-20 18:09:58] -rw------- 1 boinc boinc      4824 Dec 20 18:09 pilotlog.txt
[2025-12-20 18:09:58] -rw------- 1 boinc boinc    719220 Dec 20 18:09 log.47929288._000364.job.log.1
[2025-12-20 18:09:58] -rw------- 1 boinc boinc       357 Dec 20 18:09 output.list
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc       620 Dec 20 18:09 runtime_log
[2025-12-20 18:09:58] -rw------- 1 boinc boinc    993280 Dec 20 18:09 result.tar.gz
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc      8917 Dec 20 18:09 runtime_log.err
[2025-12-20 18:09:58] -rw------- 1 boinc boinc       662 Dec 20 18:09 1VcLDmCnpq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiFbKDm9VLKfm.diag
[2025-12-20 18:09:58] -rw-r--r-- 1 boinc boinc     12837 Dec 20 18:09 stderr.txt
[2025-12-20 18:09:58] HITS file was successfully produced:
[2025-12-20 18:09:58] -rw------- 1 boinc boinc 184319069 Dec 20 18:09 shared/HITS.pool.root.1
[2025-12-20 18:09:58]  *** Contents of shared directory: ***
[2025-12-20 18:09:58] total 428324
[2025-12-20 18:09:58] -rw-r--r-- 2 boinc boinc 252668422 Dec 20 16:47 ATLAS.root_0
[2025-12-20 18:09:58] -rw-r--r-- 2 boinc boinc    592391 Dec 20 16:47 input.tar.gz
[2025-12-20 18:09:58] -rw-r--r-- 2 boinc boinc     15847 Dec 20 16:47 start_atlas.sh
[2025-12-20 18:09:58] -rw------- 1 boinc boinc 184319069 Dec 20 18:09 HITS.pool.root.1
[2025-12-20 18:09:58] -rw------- 1 boinc boinc    993280 Dec 20 18:09 result.tar.gz
18:10:00 (2984206): run_atlas exited; CPU time 14070.702482
18:10:00 (2984206): called boinc_finish(0)

</stderr_txt>
]]>

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