Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:57:36 (585398): wrapper (7.7.26015): starting
03:57:36 (585398): wrapper: running run_atlas (--nthreads 4)
[2025-12-21 03:57:36] Arguments: --nthreads 4
[2025-12-21 03:57:36] Threads: 4
[2025-12-21 03:57:36] Checking for CVMFS
[2025-12-21 03:57:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-21 03:57:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-21 03:57:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-21 03:57:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-21 03:57:36] 2.9.2.0 4066 2722 94844 154245 3 81 26359532 36864000 0 130560 0 1564177 99.989 92844 2991 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-21 03:57:36] CVMFS is ok
[2025-12-21 03:57:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-21 03:57:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-21 03:57:36] Further information can be found at the LHC@home message board.
[2025-12-21 03:57:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-21 03:57:36] Checking for apptainer binary...
[2025-12-21 03:57:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-21 03:57:36] Running /usr/bin/apptainer --version
[2025-12-21 03:57:36] apptainer version 1.4.1-1.1
[2025-12-21 03:57:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-21 03:57:36] atlasA237
[2025-12-21 03:57:36] apptainer works
[2025-12-21 03:57:36] Set ATHENA_PROC_NUMBER=4
[2025-12-21 03:57:36] Set ATHENA_CORE_NUMBER=4
[2025-12-21 03:57:36] Starting ATLAS job with PandaID=6935456642
[2025-12-21 03:57:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-21 05:10:55]  *** The last 200 lines of the pilot log: ***
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,651 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-21 05:10:55] 2025-12-21 04:10:20,652 | INFO     | job 6935456642 has completed (purged errors)
[2025-12-21 05:10:55] 2025-12-21 04:10:20,652 | INFO     | overall cleanup function is called
[2025-12-21 05:10:55] 2025-12-21 04:10:21,658 | INFO     | --- collectZombieJob: --- 10, [595765]
[2025-12-21 05:10:55] 2025-12-21 04:10:21,658 | INFO     | zombie collector waiting for pid 595765
[2025-12-21 05:10:55] 2025-12-21 04:10:21,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-21 05:10:55] 2025-12-21 04:10:21,659 | INFO     | collected zombie processes
[2025-12-21 05:10:55] 2025-12-21 04:10:21,659 | INFO     | will attempt to kill all subprocesses of pid=595765
[2025-12-21 05:10:55] 2025-12-21 04:10:21,702 | INFO     | process IDs to be killed: [595765] (in reverse order)
[2025-12-21 05:10:55] 2025-12-21 04:10:21,733 | WARNING  | found no corresponding commands to process id(s)
[2025-12-21 05:10:55] 2025-12-21 04:10:21,733 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-21 05:10:55] 2025-12-21 04:10:21,735 | INFO     | did not find any defunct processes belonging to 595765
[2025-12-21 05:10:55] 2025-12-21 04:10:21,736 | INFO     | did not find any defunct processes belonging to 595765
[2025-12-21 05:10:55] 2025-12-21 04:10:21,736 | INFO     | ready for new job
[2025-12-21 05:10:55] 2025-12-21 04:10:21,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-21 05:10:55] 2025-12-21 04:10:21,737 | INFO     | ***************************************
[2025-12-21 05:10:55] 2025-12-21 04:10:21,737 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-21 05:10:55] 2025-12-21 04:10:21,737 | INFO     | ***************************************
[2025-12-21 05:10:55] 2025-12-21 04:10:21,737 | INFO     | 
[2025-12-21 05:10:55] 2025-12-21 04:10:21,737 | INFO     | architecture information:
[2025-12-21 05:10:55] 2025-12-21 04:10:21,737 | INFO     | executing command: cat /etc/os-release
[2025-12-21 05:10:55] 2025-12-21 04:10:21,750 | INFO     | cat /etc/os-release:
[2025-12-21 05:10:55] NAME="CentOS Linux"
[2025-12-21 05:10:55] VERSION="7 (Core)"
[2025-12-21 05:10:55] ID="centos"
[2025-12-21 05:10:55] ID_LIKE="rhel fedora"
[2025-12-21 05:10:55] VERSION_ID="7"
[2025-12-21 05:10:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-21 05:10:55] ANSI_COLOR="0;31"
[2025-12-21 05:10:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-21 05:10:55] HOME_URL="https://www.centos.org/"
[2025-12-21 05:10:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-21 05:10:55] 
[2025-12-21 05:10:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-21 05:10:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-21 05:10:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-21 05:10:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-21 05:10:55] 
[2025-12-21 05:10:55] 2025-12-21 04:10:21,750 | INFO     | ***************************************
[2025-12-21 05:10:55] 2025-12-21 04:10:22,254 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | INFO     | sufficient remaining disk space (332272762880 B)
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | INFO     | current server update state: UPDATING_FINAL
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | INFO     | update_server=False
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | INFO     | aborting loop
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-21 05:10:55] 2025-12-21 04:10:22,270 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-21 05:10:55] 2025-12-21 04:10:22,345 | INFO     | all payload control threads have been joined
[2025-12-21 05:10:55] 2025-12-21 04:10:22,348 | INFO     | all job control threads have been joined
[2025-12-21 05:10:55] 2025-12-21 04:10:22,717 | INFO     | all data control threads have been joined
[2025-12-21 05:10:55] 2025-12-21 04:10:23,276 | INFO     | [job] retrieve thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:23,276 | INFO     | [job] job monitor thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:23,276 | INFO     | [job] queue monitor thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:23,315 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-21 05:10:55] 2025-12-21 04:10:23,351 | INFO     | [payload] control thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:23,353 | INFO     | [job] control thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:23,369 | INFO     | [data] copytool_in thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:23,723 | INFO     | [data] control thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:23,732 | INFO     | [payload] failed_post thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:24,246 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:24,271 | INFO     | [payload] validate_post thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:24,484 | INFO     | [job] validate thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:24,579 | INFO     | [job] create_data_payload thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:24,645 | INFO     | [payload] execute_payloads thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:24,645 | INFO     | [payload] validate_pre thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:25,321 | INFO     | [data] copytool_out thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:26,277 | INFO     | [data] queue_monitor thread has finished
[2025-12-21 05:10:55] 2025-12-21 04:10:48,906 | INFO     | [monitor] cgroup control has ended
[2025-12-21 05:10:55] 2025-12-21 04:10:50,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286545225536)>', '<ExcThread(monitor, started 140285166216960)>']
[2025-12-21 05:10:55] 2025-12-21 04:10:52,606 | INFO     | PID=589194 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-21 05:10:55] 2025-12-21 04:10:52,606 | INFO     | found 0 job(s) in 20 queues
[2025-12-21 05:10:55] 2025-12-21 04:10:52,606 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-21 05:10:55] 2025-12-21 04:10:52,606 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-21 05:10:55] 2025-12-21 04:10:52,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-21 05:10:55] 2025-12-21 04:10:52,606 | INFO     | [monitor] control thread has ended
[2025-12-21 05:10:55] 2025-12-21 04:10:55,319 | INFO     | all workflow threads have been joined
[2025-12-21 05:10:55] 2025-12-21 04:10:55,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-21 05:10:55] 2025-12-21 04:10:55,319 | INFO     | traces error code: 0
[2025-12-21 05:10:55] 2025-12-21 04:10:55,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-21 05:10:55] 2025-12-21 04:10:55,388 [wrapper] ==== pilot stdout END ====
[2025-12-21 05:10:55] 2025-12-21 04:10:55,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-21 05:10:55] 2025-12-21 04:10:55,395 [wrapper] pilotpid: 589194
[2025-12-21 05:10:55] 2025-12-21 04:10:55,399 [wrapper] Pilot exit status: 0
[2025-12-21 05:10:55] 2025-12-21 04:10:55,410 [wrapper] pandaids: 6935456642
[2025-12-21 05:10:55] 2025-12-21 04:10:55,431 [wrapper] cleanup supervisor_pilot  605297 589195
[2025-12-21 05:10:55] 2025-12-21 04:10:55,435 [wrapper] Test setup, not cleaning
[2025-12-21 05:10:55] 2025-12-21 04:10:55,438 [wrapper] apfmon messages muted
[2025-12-21 05:10:55] 2025-12-21 04:10:55,441 [wrapper] ==== wrapper stdout END ====
[2025-12-21 05:10:55] 2025-12-21 04:10:55,445 [wrapper] ==== wrapper stderr END ====
[2025-12-21 05:10:55]  *** Error codes and diagnostics ***
[2025-12-21 05:10:55]     "exeErrorCode": 0,
[2025-12-21 05:10:55]     "exeErrorDiag": "",
[2025-12-21 05:10:55]     "pilotErrorCode": 0,
[2025-12-21 05:10:55]     "pilotErrorDiag": "",
[2025-12-21 05:10:55]  *** Listing of results directory ***
[2025-12-21 05:10:55] total 434652
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc      5112 Dec 19 17:43 queuedata.json
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc    579449 Dec 19 17:43 pilot3.tar.gz
[2025-12-21 05:10:55] -rwx------ 1 boinc boinc     36322 Dec 19 17:43 runpilot2-wrapper.sh
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc       100 Dec 21 03:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-21 05:10:55] -rwxr-xr-x 1 boinc boinc      7986 Dec 21 03:57 run_atlas
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc       105 Dec 21 03:57 job.xml
[2025-12-21 05:10:55] -rw-r--r-- 2 boinc boinc 249999001 Dec 21 03:57 EVNT.47929286._000081.pool.root.1
[2025-12-21 05:10:55] -rw-r--r-- 2 boinc boinc    592395 Dec 21 03:57 input.tar.gz
[2025-12-21 05:10:55] -rw-r--r-- 2 boinc boinc     15847 Dec 21 03:57 start_atlas.sh
[2025-12-21 05:10:55] drwxrwx--x 2 boinc boinc      4096 Dec 21 03:57 shared
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc         0 Dec 21 03:57 boinc_setup_complete
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc      6372 Dec 21 03:57 init_data.xml
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc         0 Dec 21 03:57 boinc_lockfile
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc      2545 Dec 21 03:57 pandaJob.out
[2025-12-21 05:10:55] -rw------- 1 boinc boinc    988176 Dec 21 03:57 agis_schedconf.cvmfs.json
[2025-12-21 05:10:55] -rw------- 1 boinc boinc   1516240 Dec 21 03:57 agis_ddmendpoints.agis.ALL.json
[2025-12-21 05:10:55] drwx------ 5 boinc boinc      4096 Dec 21 03:57 pilot3
[2025-12-21 05:10:55] -rw------- 1 boinc boinc 189403025 Dec 21 05:09 HITS.47929288._002201.pool.root.1
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc       530 Dec 21 05:10 boinc_task_state.xml
[2025-12-21 05:10:55] -rw------- 1 boinc boinc        95 Dec 21 05:10 pilot_heartbeat.json
[2025-12-21 05:10:55] -rw------- 1 boinc boinc      1021 Dec 21 05:10 memory_monitor_summary.json
[2025-12-21 05:10:55] -rw------- 1 boinc boinc    243744 Dec 21 05:10 log.47929288._002201.job.log.tgz.1
[2025-12-21 05:10:55] -rw------- 1 boinc boinc      7758 Dec 21 05:10 heartbeat.json
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc      8192 Dec 21 05:10 boinc_mmap_file
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc        27 Dec 21 05:10 wrapper_checkpoint.txt
[2025-12-21 05:10:55] -rw------- 1 boinc boinc      4751 Dec 21 05:10 pilotlog.txt
[2025-12-21 05:10:55] -rw------- 1 boinc boinc    646134 Dec 21 05:10 log.47929288._002201.job.log.1
[2025-12-21 05:10:55] -rw------- 1 boinc boinc       357 Dec 21 05:10 output.list
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc       620 Dec 21 05:10 runtime_log
[2025-12-21 05:10:55] -rw------- 1 boinc boinc    911360 Dec 21 05:10 result.tar.gz
[2025-12-21 05:10:55] -rw------- 1 boinc boinc       661 Dec 21 05:10 rxJODmrksq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHZbKDmkhWS4n.diag
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc      8912 Dec 21 05:10 runtime_log.err
[2025-12-21 05:10:55] -rw-r--r-- 1 boinc boinc     11923 Dec 21 05:10 stderr.txt
[2025-12-21 05:10:55] HITS file was successfully produced:
[2025-12-21 05:10:55] -rw------- 1 boinc boinc 189403025 Dec 21 05:09 shared/HITS.pool.root.1
[2025-12-21 05:10:55]  *** Contents of shared directory: ***
[2025-12-21 05:10:55] total 430600
[2025-12-21 05:10:55] -rw-r--r-- 2 boinc boinc 249999001 Dec 21 03:57 ATLAS.root_0
[2025-12-21 05:10:55] -rw-r--r-- 2 boinc boinc    592395 Dec 21 03:57 input.tar.gz
[2025-12-21 05:10:55] -rw-r--r-- 2 boinc boinc     15847 Dec 21 03:57 start_atlas.sh
[2025-12-21 05:10:55] -rw------- 1 boinc boinc 189403025 Dec 21 05:09 HITS.pool.root.1
[2025-12-21 05:10:55] -rw------- 1 boinc boinc    911360 Dec 21 05:10 result.tar.gz
05:10:57 (585398): run_atlas exited; CPU time 16281.345233
05:10:57 (585398): called boinc_finish(0)

</stderr_txt>
]]>

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