Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:07:12 (128111): wrapper (7.7.26015): starting
20:07:12 (128111): wrapper: running run_atlas (--nthreads 3)
[2025-12-20 20:07:12] Arguments: --nthreads 3
[2025-12-20 20:07:12] Threads: 3
[2025-12-20 20:07:12] Checking for CVMFS
[2025-12-20 20:07:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-20 20:07:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-20 20:07:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-20 20:07:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-20 20:07:12] 2.9.2.0 1758135 10609 74212 154234 1 57 19194038 36864000 0 130560 0 6731119 99.989 380328 7627 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-20 20:07:12] CVMFS is ok
[2025-12-20 20:07:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-20 20:07:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-20 20:07:12] Further information can be found at the LHC@home message board.
[2025-12-20 20:07:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-20 20:07:12] Checking for apptainer binary...
[2025-12-20 20:07:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-20 20:07:12] Running /usr/bin/apptainer --version
[2025-12-20 20:07:12] apptainer version 1.4.2-2.1
[2025-12-20 20:07:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-20 20:07:12] cosA133a
[2025-12-20 20:07:12] apptainer works
[2025-12-20 20:07:12] Set ATHENA_PROC_NUMBER=3
[2025-12-20 20:07:12] Set ATHENA_CORE_NUMBER=3
[2025-12-20 20:07:12] Starting ATLAS job with PandaID=6935891535
[2025-12-20 20:07:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-20 21:42:44]  *** The last 200 lines of the pilot log: ***
[2025-12-20 21:42:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-20 21:42:44]  replicas=None
[2025-12-20 21:42:44]  scope=mc23_13p6TeV
[2025-12-20 21:42:44]  status=None
[2025-12-20 21:42:44]  status_code=0
[2025-12-20 21:42:44]  storage_token=
[2025-12-20 21:42:44]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6935891535/log.47886933._017905.job.log.tgz.1
[2025-12-20 21:42:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/18/97/log.47886933._017905.job.log.tgz.1
[2025-12-20 21:42:44]  workdir=None
[2025-12-20 21:42:44] ]
[2025-12-20 21:42:44] 2025-12-20 20:42:05,693 | INFO     | transferring file log.47886933._017905.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6935891535/log.47886933._017905.job.log.tgz.1 to /local/data/boinc/
[2025-12-20 21:42:44] 2025-12-20 20:42:05,693 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6935891535/log.47886933._017905.job.log.tgz.1 /local/data/boinc/slots/0/log.47886933._0179
[2025-12-20 21:42:44] 2025-12-20 20:42:05,705 | INFO     | adding to output.list: log.47886933._017905.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/18/97/log.47886933._017905.job.log.tg
[2025-12-20 21:42:44] 2025-12-20 20:42:05,706 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-20 21:42:44] 2025-12-20 20:42:05,706 | INFO     | summary of transferred files:
[2025-12-20 21:42:44] 2025-12-20 20:42:05,706 | INFO     |  -- lfn=log.47886933._017905.job.log.tgz.1, status_code=0, status=transferred
[2025-12-20 21:42:44] 2025-12-20 20:42:05,706 | INFO     | stage-out finished correctly
[2025-12-20 21:42:44] 2025-12-20 20:42:05,736 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-20 21:42:44] 2025-12-20 20:42:06,997 | INFO     | job 6935891535 has state=finished
[2025-12-20 21:42:44] 2025-12-20 20:42:06,998 | INFO     | preparing for final server update for job 6935891535 in state='finished'
[2025-12-20 21:42:44] 2025-12-20 20:42:06,999 | INFO     | this job has now completed (state=finished)
[2025-12-20 21:42:44] 2025-12-20 20:42:06,999 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-20 21:42:44] 2025-12-20 20:42:06,999 | INFO     | log transfer has been attempted: DONE
[2025-12-20 21:42:44] 2025-12-20 20:42:07,000 | INFO     | job 6935891535 has finished - writing final server update
[2025-12-20 21:42:44] 2025-12-20 20:42:07,000 | INFO     | total number of processed events: 400 (read)
[2025-12-20 21:42:44] 2025-12-20 20:42:07,001 | INFO     | executing command: lscpu
[2025-12-20 21:42:44] 2025-12-20 20:42:07,018 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-20 21:42:44] 2025-12-20 20:42:07,280 | INFO     | monitor loop #439: job 0:6935891535 is in state 'finished'
[2025-12-20 21:42:44] 2025-12-20 20:42:07,281 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-20 21:42:44] 2025-12-20 20:42:07,462 | INFO     | time since job start (5686s) is within the limit (174528.0s)
[2025-12-20 21:42:44] 2025-12-20 20:42:09,468 | INFO     | time since job start (5688s) is within the limit (174528.0s)
[2025-12-20 21:42:44] 2025-12-20 20:42:09,785 | INFO     | monitor loop #440: job 0:6935891535 is in state 'finished'
[2025-12-20 21:42:44] 2025-12-20 20:42:09,785 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-20 21:42:44] 2025-12-20 20:42:11,474 | INFO     | time since job start (5690s) is within the limit (174528.0s)
[2025-12-20 21:42:44] 2025-12-20 20:42:12,289 | INFO     | monitor loop #441: job 0:6935891535 is in state 'finished'
[2025-12-20 21:42:44] 2025-12-20 20:42:12,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-20 21:42:44] 2025-12-20 20:42:12,790 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-20 21:42:44] 2025-12-20 20:42:12,791 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4365.681666666667
[2025-12-20 21:42:44] 2025-12-20 20:42:12,792 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6935891535/memory_monitor_summary.json (trf name=prmon)
[2025-12-20 21:42:44] 2025-12-20 20:42:12,792 | INFO     | extracted standard info from prmon json
[2025-12-20 21:42:44] 2025-12-20 20:42:12,792 | INFO     | extracted standard memory fields from prmon json
[2025-12-20 21:42:44] 2025-12-20 20:42:12,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-20 21:42:44] 2025-12-20 20:42:12,793 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-20 21:42:44] 2025-12-20 20:42:12,793 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-20 21:42:44] 2025-12-20 20:42:12,793 | INFO     | fitting pss+swap vs Time
[2025-12-20 21:42:44] 2025-12-20 20:42:12,793 | INFO     | sum of square deviations: 197203697.5
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | sum of deviations: -749527831.5
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | mean x: 1766260564.5
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | mean y: 2339679.2441860465
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | intersect: 6715507168.274918
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | chi2: 0.012432563178917309
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | current memory leak: -3.80 B/s (using 86 data points, chi2=0.01)
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | could have reported an average CPU frequency of 4319 MHz (7 samples)
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | ..............................
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | . Timing measurements:
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | . get job = 0 s
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | . initial setup = 1 s
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | . payload setup = 5 s
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | . stage-in = 0 s
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | . payload execution = 5657 s
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | . stage-out = 0 s
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | . log creation = 0 s
[2025-12-20 21:42:44] 2025-12-20 20:42:12,794 | INFO     | ..............................
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | 
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | job summary report
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | --------------------------------------------------
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | PanDA job id: 6935891535
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | task id: 47886933
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | errors: (none)
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | pilot state: finished 
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | transexitcode: 0
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | exeerrorcode: 0
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | exeerrordiag: 
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | exitcode: 0
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | exitmsg: OK
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | cpuconsumptiontime: 16358 s
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | nevents: 400
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | neventsw: 0
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | pid: 138299
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | pgrp: 138299
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | corecount: 3
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | event service: False
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | sizes: {0: 2283919, 4: 2284181, 11: 2284209, 5666: 2310958, 5667: 2320018, 5674: 2320156}
[2025-12-20 21:42:44] 2025-12-20 20:42:12,825 | INFO     | --------------------------------------------------
[2025-12-20 21:42:44] 2025-12-20 20:42:12,826 | INFO     | 
[2025-12-20 21:42:44] 2025-12-20 20:42:12,826 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-20 21:42:44] 2025-12-20 20:42:12,837 | INFO     | job 6935891535 has completed (purged errors)
[2025-12-20 21:42:44] 2025-12-20 20:42:12,838 | INFO     | overall cleanup function is called
[2025-12-20 21:42:44] 2025-12-20 20:42:13,844 | INFO     | --- collectZombieJob: --- 10, [138299]
[2025-12-20 21:42:44] 2025-12-20 20:42:13,844 | INFO     | zombie collector waiting for pid 138299
[2025-12-20 21:42:44] 2025-12-20 20:42:13,844 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-20 21:42:44] 2025-12-20 20:42:13,845 | INFO     | collected zombie processes
[2025-12-20 21:42:44] 2025-12-20 20:42:13,845 | INFO     | will attempt to kill all subprocesses of pid=138299
[2025-12-20 21:42:44] 2025-12-20 20:42:13,883 | INFO     | process IDs to be killed: [138299] (in reverse order)
[2025-12-20 21:42:44] 2025-12-20 20:42:13,907 | WARNING  | found no corresponding commands to process id(s)
[2025-12-20 21:42:44] 2025-12-20 20:42:13,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-20 21:42:44] 2025-12-20 20:42:13,908 | INFO     | did not find any defunct processes belonging to 138299
[2025-12-20 21:42:44] 2025-12-20 20:42:13,909 | INFO     | did not find any defunct processes belonging to 138299
[2025-12-20 21:42:44] 2025-12-20 20:42:13,909 | INFO     | ready for new job
[2025-12-20 21:42:44] 2025-12-20 20:42:13,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-20 21:42:44] 2025-12-20 20:42:13,910 | INFO     | ***************************************
[2025-12-20 21:42:44] 2025-12-20 20:42:13,910 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-20 21:42:44] 2025-12-20 20:42:13,910 | INFO     | ***************************************
[2025-12-20 21:42:44] 2025-12-20 20:42:13,910 | INFO     | 
[2025-12-20 21:42:44] 2025-12-20 20:42:13,910 | INFO     | architecture information:
[2025-12-20 21:42:44] 2025-12-20 20:42:13,910 | INFO     | executing command: cat /etc/os-release
[2025-12-20 21:42:44] 2025-12-20 20:42:13,920 | INFO     | cat /etc/os-release:
[2025-12-20 21:42:44] NAME="CentOS Linux"
[2025-12-20 21:42:44] VERSION="7 (Core)"
[2025-12-20 21:42:44] ID="centos"
[2025-12-20 21:42:44] ID_LIKE="rhel fedora"
[2025-12-20 21:42:44] VERSION_ID="7"
[2025-12-20 21:42:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-20 21:42:44] ANSI_COLOR="0;31"
[2025-12-20 21:42:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-20 21:42:44] HOME_URL="https://www.centos.org/"
[2025-12-20 21:42:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-20 21:42:44] 
[2025-12-20 21:42:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-20 21:42:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-20 21:42:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-20 21:42:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-20 21:42:44] 
[2025-12-20 21:42:44] 2025-12-20 20:42:13,920 | INFO     | ***************************************
[2025-12-20 21:42:44] 2025-12-20 20:42:14,423 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-20 21:42:44] 2025-12-20 20:42:14,436 | INFO     | sufficient remaining disk space (341166784512 B)
[2025-12-20 21:42:44] 2025-12-20 20:42:14,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-20 21:42:44] 2025-12-20 20:42:14,436 | INFO     | current server update state: UPDATING_FINAL
[2025-12-20 21:42:44] 2025-12-20 20:42:14,436 | INFO     | update_server=False
[2025-12-20 21:42:44] 2025-12-20 20:42:14,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-20 21:42:44] 2025-12-20 20:42:14,436 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-20 21:42:44] 2025-12-20 20:42:14,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-20 21:42:44] 2025-12-20 20:42:14,762 | INFO     | all data control threads have been joined
[2025-12-20 21:42:44] 2025-12-20 20:42:14,784 | INFO     | all payload control threads have been joined
[2025-12-20 21:42:44] 2025-12-20 20:42:14,793 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-20 21:42:44] 2025-12-20 20:42:14,793 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-20 21:42:44] 2025-12-20 20:42:14,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-20 21:42:44] 2025-12-20 20:42:14,794 | INFO     | will abort loop
[2025-12-20 21:42:44] 2025-12-20 20:42:15,442 | INFO     | [job] retrieve thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:15,442 | INFO     | [job] queue monitor thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:15,446 | INFO     | [job] create_data_payload thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:15,572 | INFO     | [payload] execute_payloads thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:15,768 | INFO     | [data] control thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:15,783 | INFO     | [payload] validate_pre thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:15,790 | INFO     | [payload] control thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:15,799 | INFO     | [job] job monitor thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:15,933 | INFO     | [payload] failed_post thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:16,055 | INFO     | [data] copytool_in thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:16,142 | INFO     | all job control threads have been joined
[2025-12-20 21:42:44] 2025-12-20 20:42:16,273 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-20 21:42:44] 2025-12-20 20:42:16,443 | INFO     | [data] copytool_out thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:16,502 | INFO     | [payload] validate_post thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:16,907 | INFO     | [job] validate thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:17,148 | INFO     | [job] control thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:20,281 | INFO     | [data] queue_monitor thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:24,573 | INFO     | job.realtimelogging is not enabled
[2025-12-20 21:42:44] 2025-12-20 20:42:25,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-20 21:42:44] 2025-12-20 20:42:28,188 | INFO     | [monitor] cgroup control has ended
[2025-12-20 21:42:44] 2025-12-20 20:42:29,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140167640516416)>', '<ExcThread(monitor, started 140166752610048)>']
[2025-12-20 21:42:44] 2025-12-20 20:42:34,220 | INFO     | all workflow threads have been joined
[2025-12-20 21:42:44] 2025-12-20 20:42:34,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-20 21:42:44] 2025-12-20 20:42:34,221 | INFO     | traces error code: 0
[2025-12-20 21:42:44] 2025-12-20 20:42:34,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-20 21:42:44] 2025-12-20 20:42:44,592 | INFO     | PID=131836 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-20 21:42:44] 2025-12-20 20:42:44,592 | INFO     | found 0 job(s) in 20 queues
[2025-12-20 21:42:44] 2025-12-20 20:42:44,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-20 21:42:44] 2025-12-20 20:42:44,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-20 21:42:44] 2025-12-20 20:42:44,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-20 21:42:44] 2025-12-20 20:42:44,592 | INFO     | [monitor] control thread has ended
[2025-12-20 21:42:44] 2025-12-20 20:42:44,635 [wrapper] ==== pilot stdout END ====
[2025-12-20 21:42:44] 2025-12-20 20:42:44,637 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-20 21:42:44] 2025-12-20 20:42:44,640 [wrapper] pilotpid: 131836
[2025-12-20 21:42:44] 2025-12-20 20:42:44,643 [wrapper] Pilot exit status: 0
[2025-12-20 21:42:44] 2025-12-20 20:42:44,650 [wrapper] pandaids: 6935891535
[2025-12-20 21:42:44] 2025-12-20 20:42:44,666 [wrapper] cleanup supervisor_pilot  150287 131837
[2025-12-20 21:42:44] 2025-12-20 20:42:44,668 [wrapper] Test setup, not cleaning
[2025-12-20 21:42:44] 2025-12-20 20:42:44,671 [wrapper] apfmon messages muted
[2025-12-20 21:42:44] 2025-12-20 20:42:44,673 [wrapper] ==== wrapper stdout END ====
[2025-12-20 21:42:44] 2025-12-20 20:42:44,676 [wrapper] ==== wrapper stderr END ====
[2025-12-20 21:42:44]  *** Error codes and diagnostics ***
[2025-12-20 21:42:44]     "exeErrorCode": 0,
[2025-12-20 21:42:44]     "exeErrorDiag": "",
[2025-12-20 21:42:44]     "pilotErrorCode": 0,
[2025-12-20 21:42:44]     "pilotErrorDiag": "",
[2025-12-20 21:42:44]  *** Listing of results directory ***
[2025-12-20 21:42:44] total 336236
[2025-12-20 21:42:44] -rwx------ 1 boinc boinc     36322 Dec 19 17:43 runpilot2-wrapper.sh
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc      5112 Dec 19 17:43 queuedata.json
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc    579449 Dec 19 17:43 pilot3.tar.gz
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc       100 Dec 20 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-20 21:42:44] -rwxr-xr-x 1 boinc boinc      7986 Dec 20 20:07 run_atlas
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc       105 Dec 20 20:07 job.xml
[2025-12-20 21:42:44] -rw-r--r-- 2 boinc boinc 191524236 Dec 20 20:07 EVNT.47886929._000329.pool.root.1
[2025-12-20 21:42:44] -rw-r--r-- 2 boinc boinc    592393 Dec 20 20:07 input.tar.gz
[2025-12-20 21:42:44] -rw-r--r-- 2 boinc boinc     15847 Dec 20 20:07 start_atlas.sh
[2025-12-20 21:42:44] drwxrwx--x 2 boinc boinc      4096 Dec 20 20:07 shared
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc         0 Dec 20 20:07 boinc_setup_complete
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc      6274 Dec 20 20:07 init_data.xml
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc         0 Dec 20 20:07 boinc_lockfile
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc      2514 Dec 20 20:07 pandaJob.out
[2025-12-20 21:42:44] -rw------- 1 boinc boinc    988154 Dec 20 20:07 agis_schedconf.cvmfs.json
[2025-12-20 21:42:44] -rw------- 1 boinc boinc   1516240 Dec 20 20:07 agis_ddmendpoints.agis.ALL.json
[2025-12-20 21:42:44] drwx------ 5 boinc boinc      4096 Dec 20 20:07 pilot3
[2025-12-20 21:42:44] -rw------- 1 boinc boinc 146679851 Dec 20 21:41 HITS.47886933._017905.pool.root.1
[2025-12-20 21:42:44] -rw------- 1 boinc boinc        95 Dec 20 21:41 pilot_heartbeat.json
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc       529 Dec 20 21:41 boinc_task_state.xml
[2025-12-20 21:42:44] -rw------- 1 boinc boinc      1025 Dec 20 21:42 memory_monitor_summary.json
[2025-12-20 21:42:44] -rw------- 1 boinc boinc    269853 Dec 20 21:42 log.47886933._017905.job.log.tgz.1
[2025-12-20 21:42:44] -rw------- 1 boinc boinc      7749 Dec 20 21:42 heartbeat.json
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc        27 Dec 20 21:42 wrapper_checkpoint.txt
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc      8192 Dec 20 21:42 boinc_mmap_file
[2025-12-20 21:42:44] -rw------- 1 boinc boinc       746 Dec 20 21:42 pilotlog.txt
[2025-12-20 21:42:44] -rw------- 1 boinc boinc    829363 Dec 20 21:42 log.47886933._017905.job.log.1
[2025-12-20 21:42:44] -rw------- 1 boinc boinc       357 Dec 20 21:42 output.list
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc       620 Dec 20 21:42 runtime_log
[2025-12-20 21:42:44] -rw------- 1 boinc boinc   1116160 Dec 20 21:42 result.tar.gz
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc      8907 Dec 20 21:42 runtime_log.err
[2025-12-20 21:42:44] -rw------- 1 boinc boinc       661 Dec 20 21:42 NarKDmVksq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnVbKDmeth6em.diag
[2025-12-20 21:42:44] -rw-r--r-- 1 boinc boinc     21877 Dec 20 21:42 stderr.txt
[2025-12-20 21:42:44] HITS file was successfully produced:
[2025-12-20 21:42:44] -rw------- 1 boinc boinc 146679851 Dec 20 21:41 shared/HITS.pool.root.1
[2025-12-20 21:42:44]  *** Contents of shared directory: ***
[2025-12-20 21:42:44] total 331972
[2025-12-20 21:42:44] -rw-r--r-- 2 boinc boinc 191524236 Dec 20 20:07 ATLAS.root_0
[2025-12-20 21:42:44] -rw-r--r-- 2 boinc boinc    592393 Dec 20 20:07 input.tar.gz
[2025-12-20 21:42:44] -rw-r--r-- 2 boinc boinc     15847 Dec 20 20:07 start_atlas.sh
[2025-12-20 21:42:44] -rw------- 1 boinc boinc 146679851 Dec 20 21:41 HITS.pool.root.1
[2025-12-20 21:42:44] -rw------- 1 boinc boinc   1116160 Dec 20 21:42 result.tar.gz
21:42:46 (128111): run_atlas exited; CPU time 16385.607720
21:42:46 (128111): called boinc_finish(0)

</stderr_txt>
]]>

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