Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:57:25 (3311352): wrapper (7.7.26015): starting
00:57:25 (3311352): wrapper: running run_atlas (--nthreads 4)
[2025-12-20 00:57:25] Arguments: --nthreads 4
[2025-12-20 00:57:25] Threads: 4
[2025-12-20 00:57:25] Checking for CVMFS
[2025-12-20 00:57:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-20 00:57:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-20 00:57:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-20 00:57:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-20 00:57:25] 2.9.2.0 639704 9602 106268 154206 1 57 20289875 36864000 0 130560 0 6578344 99.990 348030 18081 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-20 00:57:25] CVMFS is ok
[2025-12-20 00:57:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-20 00:57:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-20 00:57:25] Further information can be found at the LHC@home message board.
[2025-12-20 00:57:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-20 00:57:25] Checking for apptainer binary...
[2025-12-20 00:57:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-20 00:57:25] Running /usr/bin/apptainer --version
[2025-12-20 00:57:25] apptainer version 1.4.1-1.1
[2025-12-20 00:57:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-20 00:57:25] thA309
[2025-12-20 00:57:25] apptainer works
[2025-12-20 00:57:25] Set ATHENA_PROC_NUMBER=4
[2025-12-20 00:57:25] Set ATHENA_CORE_NUMBER=4
[2025-12-20 00:57:25] Starting ATLAS job with PandaID=6934552624
[2025-12-20 00:57:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-20 02:38:48]  *** The last 200 lines of the pilot log: ***
[2025-12-20 02:38:48] 2025-12-20 01:38:04,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | job 6934552624 has completed (purged errors)
[2025-12-20 02:38:48] 2025-12-20 01:38:04,940 | INFO     | overall cleanup function is called
[2025-12-20 02:38:48] 2025-12-20 01:38:05,947 | INFO     | --- collectZombieJob: --- 10, [3321724]
[2025-12-20 02:38:48] 2025-12-20 01:38:05,947 | INFO     | zombie collector waiting for pid 3321724
[2025-12-20 02:38:48] 2025-12-20 01:38:05,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-20 02:38:48] 2025-12-20 01:38:05,947 | INFO     | collected zombie processes
[2025-12-20 02:38:48] 2025-12-20 01:38:05,947 | INFO     | will attempt to kill all subprocesses of pid=3321724
[2025-12-20 02:38:48] 2025-12-20 01:38:05,999 | INFO     | process IDs to be killed: [3321724] (in reverse order)
[2025-12-20 02:38:48] 2025-12-20 01:38:06,036 | WARNING  | found no corresponding commands to process id(s)
[2025-12-20 02:38:48] 2025-12-20 01:38:06,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-20 02:38:48] 2025-12-20 01:38:06,039 | INFO     | did not find any defunct processes belonging to 3321724
[2025-12-20 02:38:48] 2025-12-20 01:38:06,040 | INFO     | did not find any defunct processes belonging to 3321724
[2025-12-20 02:38:48] 2025-12-20 01:38:06,040 | INFO     | ready for new job
[2025-12-20 02:38:48] 2025-12-20 01:38:06,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-20 02:38:48] 2025-12-20 01:38:06,041 | INFO     | ***************************************
[2025-12-20 02:38:48] 2025-12-20 01:38:06,041 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-20 02:38:48] 2025-12-20 01:38:06,041 | INFO     | ***************************************
[2025-12-20 02:38:48] 2025-12-20 01:38:06,041 | INFO     | 
[2025-12-20 02:38:48] 2025-12-20 01:38:06,042 | INFO     | architecture information:
[2025-12-20 02:38:48] 2025-12-20 01:38:06,042 | INFO     | executing command: cat /etc/os-release
[2025-12-20 02:38:48] 2025-12-20 01:38:06,057 | INFO     | cat /etc/os-release:
[2025-12-20 02:38:48] NAME="CentOS Linux"
[2025-12-20 02:38:48] VERSION="7 (Core)"
[2025-12-20 02:38:48] ID="centos"
[2025-12-20 02:38:48] ID_LIKE="rhel fedora"
[2025-12-20 02:38:48] VERSION_ID="7"
[2025-12-20 02:38:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-20 02:38:48] ANSI_COLOR="0;31"
[2025-12-20 02:38:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-20 02:38:48] HOME_URL="https://www.centos.org/"
[2025-12-20 02:38:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-20 02:38:48] 
[2025-12-20 02:38:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-20 02:38:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-20 02:38:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-20 02:38:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-20 02:38:48] 
[2025-12-20 02:38:48] 2025-12-20 01:38:06,057 | INFO     | ***************************************
[2025-12-20 02:38:48] 2025-12-20 01:38:06,560 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-20 02:38:48] 2025-12-20 01:38:06,580 | INFO     | sufficient remaining disk space (239224225792 B)
[2025-12-20 02:38:48] 2025-12-20 01:38:06,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-20 02:38:48] 2025-12-20 01:38:06,580 | INFO     | current server update state: UPDATING_FINAL
[2025-12-20 02:38:48] 2025-12-20 01:38:06,580 | INFO     | update_server=False
[2025-12-20 02:38:48] 2025-12-20 01:38:06,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-20 02:38:48] 2025-12-20 01:38:06,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-20 02:38:48] 2025-12-20 01:38:06,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-20 02:38:48] 2025-12-20 01:38:06,912 | INFO     | all payload control threads have been joined
[2025-12-20 02:38:48] 2025-12-20 01:38:06,953 | INFO     | all job control threads have been joined
[2025-12-20 02:38:48] 2025-12-20 01:38:07,020 | INFO     | all data control threads have been joined
[2025-12-20 02:38:48] 2025-12-20 01:38:07,072 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-20 02:38:48] 2025-12-20 01:38:07,072 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-20 02:38:48] 2025-12-20 01:38:07,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-20 02:38:48] 2025-12-20 01:38:07,072 | INFO     | will abort loop
[2025-12-20 02:38:48] 2025-12-20 01:38:07,586 | INFO     | [job] retrieve thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:07,586 | INFO     | [job] queue monitor thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:07,649 | INFO     | [payload] validate_post thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:07,918 | INFO     | [payload] control thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:07,959 | INFO     | [job] control thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:07,960 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-20 02:38:48] 2025-12-20 01:38:07,972 | INFO     | [job] validate thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:08,026 | INFO     | [data] control thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:08,078 | INFO     | [job] job monitor thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:08,086 | INFO     | [job] create_data_payload thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:08,228 | INFO     | [payload] validate_pre thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:08,382 | INFO     | [payload] execute_payloads thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:08,744 | INFO     | [payload] failed_post thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:08,760 | INFO     | [data] copytool_in thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:09,967 | INFO     | [data] copytool_out thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:10,791 | INFO     | [data] queue_monitor thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:16,755 | INFO     | job.realtimelogging is not enabled
[2025-12-20 02:38:48] 2025-12-20 01:38:17,761 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-20 02:38:48] 2025-12-20 01:38:36,361 | INFO     | PID=3315131 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-20 02:38:48] 2025-12-20 01:38:36,362 | INFO     | found 0 job(s) in 20 queues
[2025-12-20 02:38:48] 2025-12-20 01:38:36,362 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-20 02:38:48] 2025-12-20 01:38:36,362 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-20 02:38:48] 2025-12-20 01:38:41,472 | INFO     | [monitor] cgroup control has ended
[2025-12-20 02:38:48] 2025-12-20 01:38:43,461 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140206947702592)>', '<ExcThread(monitor, started 140206279730944)>']
[2025-12-20 02:38:48] 2025-12-20 01:38:44,405 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-20 02:38:48] 2025-12-20 01:38:44,405 | INFO     | [monitor] control thread has ended
[2025-12-20 02:38:48] 2025-12-20 01:38:48,487 | INFO     | all workflow threads have been joined
[2025-12-20 02:38:48] 2025-12-20 01:38:48,487 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-20 02:38:48] 2025-12-20 01:38:48,487 | INFO     | traces error code: 0
[2025-12-20 02:38:48] 2025-12-20 01:38:48,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-20 02:38:48] 2025-12-20 01:38:48,572 [wrapper] ==== pilot stdout END ====
[2025-12-20 02:38:48] 2025-12-20 01:38:48,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-20 02:38:48] 2025-12-20 01:38:48,580 [wrapper] pilotpid: 3315131
[2025-12-20 02:38:48] 2025-12-20 01:38:48,584 [wrapper] Pilot exit status: 0
[2025-12-20 02:38:48] 2025-12-20 01:38:48,597 [wrapper] pandaids: 6934552624
[2025-12-20 02:38:48] 2025-12-20 01:38:48,621 [wrapper] cleanup supervisor_pilot 3338153 3315132
[2025-12-20 02:38:48] 2025-12-20 01:38:48,625 [wrapper] Test setup, not cleaning
[2025-12-20 02:38:48] 2025-12-20 01:38:48,629 [wrapper] apfmon messages muted
[2025-12-20 02:38:48] 2025-12-20 01:38:48,633 [wrapper] ==== wrapper stdout END ====
[2025-12-20 02:38:48] 2025-12-20 01:38:48,637 [wrapper] ==== wrapper stderr END ====
[2025-12-20 02:38:48]  *** Error codes and diagnostics ***
[2025-12-20 02:38:48]     "exeErrorCode": 0,
[2025-12-20 02:38:48]     "exeErrorDiag": "",
[2025-12-20 02:38:48]     "pilotErrorCode": 0,
[2025-12-20 02:38:48]     "pilotErrorDiag": "",
[2025-12-20 02:38:48]  *** Listing of results directory ***
[2025-12-20 02:38:48] total 439424
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc    579449 Dec 19 00:10 pilot3.tar.gz
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc      5112 Dec 19 00:11 queuedata.json
[2025-12-20 02:38:48] -rwx------ 1 boinc boinc     36322 Dec 19 00:12 runpilot2-wrapper.sh
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc       100 Dec 20 00:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-20 02:38:48] -rwxr-xr-x 1 boinc boinc      7986 Dec 20 00:57 run_atlas
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc       105 Dec 20 00:57 job.xml
[2025-12-20 02:38:48] -rw-r--r-- 2 boinc boinc 225526785 Dec 20 00:57 EVNT.47898761._000989.pool.root.1
[2025-12-20 02:38:48] -rw-r--r-- 2 boinc boinc    592403 Dec 20 00:57 input.tar.gz
[2025-12-20 02:38:48] -rw-r--r-- 2 boinc boinc     15847 Dec 20 00:57 start_atlas.sh
[2025-12-20 02:38:48] drwxrwx--x 2 boinc boinc      4096 Dec 20 00:57 shared
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc         0 Dec 20 00:57 boinc_setup_complete
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc      6377 Dec 20 00:57 init_data.xml
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc         0 Dec 20 00:57 boinc_lockfile
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc      2508 Dec 20 00:57 pandaJob.out
[2025-12-20 02:38:48] -rw------- 1 boinc boinc    988138 Dec 20 00:57 agis_schedconf.cvmfs.json
[2025-12-20 02:38:48] -rw------- 1 boinc boinc   1516240 Dec 20 00:57 agis_ddmendpoints.agis.ALL.json
[2025-12-20 02:38:48] drwx------ 5 boinc boinc      4096 Dec 20 00:57 pilot3
[2025-12-20 02:38:48] -rw------- 1 boinc boinc 218196117 Dec 20 02:37 HITS.47898763._025692.pool.root.1
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc       529 Dec 20 02:37 boinc_task_state.xml
[2025-12-20 02:38:48] -rw------- 1 boinc boinc      1023 Dec 20 02:37 memory_monitor_summary.json
[2025-12-20 02:38:48] -rw------- 1 boinc boinc    296948 Dec 20 02:37 log.47898763._025692.job.log.tgz.1
[2025-12-20 02:38:48] -rw------- 1 boinc boinc      7762 Dec 20 02:38 heartbeat.json
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc      8192 Dec 20 02:38 boinc_mmap_file
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc        27 Dec 20 02:38 wrapper_checkpoint.txt
[2025-12-20 02:38:48] -rw------- 1 boinc boinc        95 Dec 20 02:38 pilot_heartbeat.json
[2025-12-20 02:38:48] -rw------- 1 boinc boinc      5010 Dec 20 02:38 pilotlog.txt
[2025-12-20 02:38:48] -rw------- 1 boinc boinc    874874 Dec 20 02:38 log.47898763._025692.job.log.1
[2025-12-20 02:38:48] -rw------- 1 boinc boinc       357 Dec 20 02:38 output.list
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc       620 Dec 20 02:38 runtime_log
[2025-12-20 02:38:48] -rw------- 1 boinc boinc   1187840 Dec 20 02:38 result.tar.gz
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc      8897 Dec 20 02:38 runtime_log.err
[2025-12-20 02:38:48] -rw------- 1 boinc boinc       659 Dec 20 02:38 IyGODmVLcq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGEaKDmXKQ0Eo.diag
[2025-12-20 02:38:48] -rw-r--r-- 1 boinc boinc     12873 Dec 20 02:38 stderr.txt
[2025-12-20 02:38:48] HITS file was successfully produced:
[2025-12-20 02:38:48] -rw------- 1 boinc boinc 218196117 Dec 20 02:37 shared/HITS.pool.root.1
[2025-12-20 02:38:48]  *** Contents of shared directory: ***
[2025-12-20 02:38:48] total 435092
[2025-12-20 02:38:48] -rw-r--r-- 2 boinc boinc 225526785 Dec 20 00:57 ATLAS.root_0
[2025-12-20 02:38:48] -rw-r--r-- 2 boinc boinc    592403 Dec 20 00:57 input.tar.gz
[2025-12-20 02:38:48] -rw-r--r-- 2 boinc boinc     15847 Dec 20 00:57 start_atlas.sh
[2025-12-20 02:38:48] -rw------- 1 boinc boinc 218196117 Dec 20 02:37 HITS.pool.root.1
[2025-12-20 02:38:48] -rw------- 1 boinc boinc   1187840 Dec 20 02:38 result.tar.gz
02:38:50 (3311352): run_atlas exited; CPU time 23093.241775
02:38:50 (3311352): called boinc_finish(0)

</stderr_txt>
]]>

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