Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:39:11 (3343349): wrapper (7.7.26015): starting
02:39:11 (3343349): wrapper: running run_atlas (--nthreads 4)
[2025-12-20 02:39:11] Arguments: --nthreads 4
[2025-12-20 02:39:11] Threads: 4
[2025-12-20 02:39:11] Checking for CVMFS
[2025-12-20 02:39:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-20 02:39:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-20 02:39:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-20 02:39:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-20 02:39:12] 2.9.2.0 639704 9704 105952 154208 3 56 20298155 36864000 0 130560 0 6649728 99.990 350798 18083 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-20 02:39:12] CVMFS is ok
[2025-12-20 02:39:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-20 02:39:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-20 02:39:12] Further information can be found at the LHC@home message board.
[2025-12-20 02:39:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-20 02:39:12] Checking for apptainer binary...
[2025-12-20 02:39:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-20 02:39:12] Running /usr/bin/apptainer --version
[2025-12-20 02:39:12] apptainer version 1.4.1-1.1
[2025-12-20 02:39:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-20 02:39:12] thA309
[2025-12-20 02:39:12] apptainer works
[2025-12-20 02:39:12] Set ATHENA_PROC_NUMBER=4
[2025-12-20 02:39:12] Set ATHENA_CORE_NUMBER=4
[2025-12-20 02:39:12] Starting ATLAS job with PandaID=6934988337
[2025-12-20 02:39:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-20 03:52:33]  *** The last 200 lines of the pilot log: ***
[2025-12-20 03:52:33] 2025-12-20 02:52:01,705 | INFO     | overall cleanup function is called
[2025-12-20 03:52:33] 2025-12-20 02:52:02,711 | INFO     | --- collectZombieJob: --- 10, [3353740]
[2025-12-20 03:52:33] 2025-12-20 02:52:02,711 | INFO     | zombie collector waiting for pid 3353740
[2025-12-20 03:52:33] 2025-12-20 02:52:02,712 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-20 03:52:33] 2025-12-20 02:52:02,712 | INFO     | collected zombie processes
[2025-12-20 03:52:33] 2025-12-20 02:52:02,712 | INFO     | will attempt to kill all subprocesses of pid=3353740
[2025-12-20 03:52:33] 2025-12-20 02:52:02,764 | INFO     | process IDs to be killed: [3353740] (in reverse order)
[2025-12-20 03:52:33] 2025-12-20 02:52:02,801 | WARNING  | found no corresponding commands to process id(s)
[2025-12-20 03:52:33] 2025-12-20 02:52:02,801 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-20 03:52:33] 2025-12-20 02:52:02,803 | INFO     | did not find any defunct processes belonging to 3353740
[2025-12-20 03:52:33] 2025-12-20 02:52:02,805 | INFO     | did not find any defunct processes belonging to 3353740
[2025-12-20 03:52:33] 2025-12-20 02:52:02,805 | INFO     | ready for new job
[2025-12-20 03:52:33] 2025-12-20 02:52:02,805 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-20 03:52:33] 2025-12-20 02:52:02,806 | INFO     | ***************************************
[2025-12-20 03:52:33] 2025-12-20 02:52:02,806 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-20 03:52:33] 2025-12-20 02:52:02,806 | INFO     | ***************************************
[2025-12-20 03:52:33] 2025-12-20 02:52:02,806 | INFO     | 
[2025-12-20 03:52:33] 2025-12-20 02:52:02,806 | INFO     | architecture information:
[2025-12-20 03:52:33] 2025-12-20 02:52:02,806 | INFO     | executing command: cat /etc/os-release
[2025-12-20 03:52:33] 2025-12-20 02:52:02,821 | INFO     | cat /etc/os-release:
[2025-12-20 03:52:33] NAME="CentOS Linux"
[2025-12-20 03:52:33] VERSION="7 (Core)"
[2025-12-20 03:52:33] ID="centos"
[2025-12-20 03:52:33] ID_LIKE="rhel fedora"
[2025-12-20 03:52:33] VERSION_ID="7"
[2025-12-20 03:52:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-20 03:52:33] ANSI_COLOR="0;31"
[2025-12-20 03:52:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-20 03:52:33] HOME_URL="https://www.centos.org/"
[2025-12-20 03:52:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-20 03:52:33] 
[2025-12-20 03:52:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-20 03:52:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-20 03:52:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-20 03:52:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-20 03:52:33] 
[2025-12-20 03:52:33] 2025-12-20 02:52:02,821 | INFO     | ***************************************
[2025-12-20 03:52:33] 2025-12-20 02:52:03,325 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-20 03:52:33] 2025-12-20 02:52:03,343 | INFO     | sufficient remaining disk space (239449669632 B)
[2025-12-20 03:52:33] 2025-12-20 02:52:03,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-20 03:52:33] 2025-12-20 02:52:03,343 | INFO     | current server update state: UPDATING_FINAL
[2025-12-20 03:52:33] 2025-12-20 02:52:03,343 | INFO     | update_server=False
[2025-12-20 03:52:33] 2025-12-20 02:52:03,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-20 03:52:33] 2025-12-20 02:52:03,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-20 03:52:33] 2025-12-20 02:52:03,343 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-20 03:52:33] 2025-12-20 02:52:03,423 | INFO     | all payload control threads have been joined
[2025-12-20 03:52:33] 2025-12-20 02:52:03,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-20 03:52:33] 2025-12-20 02:52:03,551 | INFO     | aborting loop
[2025-12-20 03:52:33] 2025-12-20 02:52:03,553 | INFO     | all data control threads have been joined
[2025-12-20 03:52:33] 2025-12-20 02:52:04,106 | INFO     | all job control threads have been joined
[2025-12-20 03:52:33] 2025-12-20 02:52:04,349 | INFO     | [job] queue monitor thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:04,349 | INFO     | [job] retrieve thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:04,429 | INFO     | [payload] control thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:04,519 | INFO     | [payload] validate_post thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:04,537 | INFO     | [data] copytool_in thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:04,556 | INFO     | [job] job monitor thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:04,559 | INFO     | [data] control thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:04,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-20 03:52:33] 2025-12-20 02:52:04,879 | INFO     | [payload] failed_post thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:05,112 | INFO     | [job] control thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:05,266 | INFO     | [job] validate thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:05,387 | INFO     | [payload] execute_payloads thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:05,393 | INFO     | [job] create_data_payload thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:05,484 | INFO     | [payload] validate_pre thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:06,820 | INFO     | [data] copytool_out thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:07,350 | INFO     | [data] queue_monitor thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:14,238 | INFO     | job.realtimelogging is not enabled
[2025-12-20 03:52:33] 2025-12-20 02:52:15,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-20 03:52:33] 2025-12-20 02:52:25,366 | INFO     | [monitor] cgroup control has ended
[2025-12-20 03:52:33] 2025-12-20 02:52:27,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139853211932480)>', '<ExcThread(monitor, started 139851902998272)>']
[2025-12-20 03:52:33] 2025-12-20 02:52:32,259 | INFO     | all workflow threads have been joined
[2025-12-20 03:52:33] 2025-12-20 02:52:32,260 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-20 03:52:33] 2025-12-20 02:52:32,260 | INFO     | traces error code: 0
[2025-12-20 03:52:33] 2025-12-20 02:52:32,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-20 03:52:33] 2025-12-20 02:52:33,288 | INFO     | PID=3347143 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-20 03:52:33] 2025-12-20 02:52:33,288 | INFO     | found 0 job(s) in 20 queues
[2025-12-20 03:52:33] 2025-12-20 02:52:33,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-20 03:52:33] 2025-12-20 02:52:33,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-20 03:52:33] 2025-12-20 02:52:33,288 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-20 03:52:33] 2025-12-20 02:52:33,288 | INFO     | [monitor] control thread has ended
[2025-12-20 03:52:33] 2025-12-20 02:52:33,366 [wrapper] ==== pilot stdout END ====
[2025-12-20 03:52:33] 2025-12-20 02:52:33,370 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-20 03:52:33] 2025-12-20 02:52:33,374 [wrapper] pilotpid: 3347143
[2025-12-20 03:52:33] 2025-12-20 02:52:33,378 [wrapper] Pilot exit status: 0
[2025-12-20 03:52:33] 2025-12-20 02:52:33,390 [wrapper] pandaids: 6934988337
[2025-12-20 03:52:33] 2025-12-20 02:52:33,415 [wrapper] cleanup supervisor_pilot 3365458 3347144
[2025-12-20 03:52:33] 2025-12-20 02:52:33,419 [wrapper] Test setup, not cleaning
[2025-12-20 03:52:33] 2025-12-20 02:52:33,423 [wrapper] apfmon messages muted
[2025-12-20 03:52:33] 2025-12-20 02:52:33,427 [wrapper] ==== wrapper stdout END ====
[2025-12-20 03:52:33] 2025-12-20 02:52:33,430 [wrapper] ==== wrapper stderr END ====
[2025-12-20 03:52:33]  *** Error codes and diagnostics ***
[2025-12-20 03:52:33]     "exeErrorCode": 0,
[2025-12-20 03:52:33]     "exeErrorDiag": "",
[2025-12-20 03:52:33]     "pilotErrorCode": 0,
[2025-12-20 03:52:33]     "pilotErrorDiag": "",
[2025-12-20 03:52:33]  *** Listing of results directory ***
[2025-12-20 03:52:33] total 431588
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc    579449 Dec 19 06:06 pilot3.tar.gz
[2025-12-20 03:52:33] -rwx------ 1 boinc boinc     36322 Dec 19 06:09 runpilot2-wrapper.sh
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc      5112 Dec 19 06:12 queuedata.json
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc       100 Dec 20 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-20 03:52:33] -rwxr-xr-x 1 boinc boinc      7986 Dec 20 02:39 run_atlas
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc       105 Dec 20 02:39 job.xml
[2025-12-20 03:52:33] -rw-r--r-- 2 boinc boinc 251853087 Dec 20 02:39 EVNT.47929278._000011.pool.root.1
[2025-12-20 03:52:33] -rw-r--r-- 2 boinc boinc    592404 Dec 20 02:39 input.tar.gz
[2025-12-20 03:52:33] -rw-r--r-- 2 boinc boinc     15847 Dec 20 02:39 start_atlas.sh
[2025-12-20 03:52:33] drwxrwx--x 2 boinc boinc      4096 Dec 20 02:39 shared
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc         0 Dec 20 02:39 boinc_setup_complete
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc      6377 Dec 20 02:39 init_data.xml
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc         0 Dec 20 02:39 boinc_lockfile
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc      2563 Dec 20 02:39 pandaJob.out
[2025-12-20 03:52:33] -rw------- 1 boinc boinc    988154 Dec 20 02:39 agis_schedconf.cvmfs.json
[2025-12-20 03:52:33] -rw------- 1 boinc boinc   1516240 Dec 20 02:39 agis_ddmendpoints.agis.ALL.json
[2025-12-20 03:52:33] drwx------ 5 boinc boinc      4096 Dec 20 02:39 pilot3
[2025-12-20 03:52:33] -rw------- 1 boinc boinc 184373204 Dec 20 03:51 HITS.47929280._000492.pool.root.1
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc       529 Dec 20 03:51 boinc_task_state.xml
[2025-12-20 03:52:33] -rw------- 1 boinc boinc        95 Dec 20 03:51 pilot_heartbeat.json
[2025-12-20 03:52:33] -rw------- 1 boinc boinc      1016 Dec 20 03:51 memory_monitor_summary.json
[2025-12-20 03:52:33] -rw------- 1 boinc boinc    264985 Dec 20 03:51 log.47929280._000492.job.log.tgz.1
[2025-12-20 03:52:33] -rw------- 1 boinc boinc      7749 Dec 20 03:52 heartbeat.json
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc      8192 Dec 20 03:52 boinc_mmap_file
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc        27 Dec 20 03:52 wrapper_checkpoint.txt
[2025-12-20 03:52:33] -rw------- 1 boinc boinc       747 Dec 20 03:52 pilotlog.txt
[2025-12-20 03:52:33] -rw------- 1 boinc boinc    647075 Dec 20 03:52 log.47929280._000492.job.log.1
[2025-12-20 03:52:33] -rw------- 1 boinc boinc       357 Dec 20 03:52 output.list
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc       620 Dec 20 03:52 runtime_log
[2025-12-20 03:52:33] -rw------- 1 boinc boinc    931840 Dec 20 03:52 result.tar.gz
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc      8897 Dec 20 03:52 runtime_log.err
[2025-12-20 03:52:33] -rw------- 1 boinc boinc       658 Dec 20 03:52 jw5KDmGvhq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnjaKDmECxAan.diag
[2025-12-20 03:52:33] -rw-r--r-- 1 boinc boinc     10803 Dec 20 03:52 stderr.txt
[2025-12-20 03:52:33] HITS file was successfully produced:
[2025-12-20 03:52:33] -rw------- 1 boinc boinc 184373204 Dec 20 03:51 shared/HITS.pool.root.1
[2025-12-20 03:52:33]  *** Contents of shared directory: ***
[2025-12-20 03:52:33] total 427520
[2025-12-20 03:52:33] -rw-r--r-- 2 boinc boinc 251853087 Dec 20 02:39 ATLAS.root_0
[2025-12-20 03:52:33] -rw-r--r-- 2 boinc boinc    592404 Dec 20 02:39 input.tar.gz
[2025-12-20 03:52:33] -rw-r--r-- 2 boinc boinc     15847 Dec 20 02:39 start_atlas.sh
[2025-12-20 03:52:33] -rw------- 1 boinc boinc 184373204 Dec 20 03:51 HITS.pool.root.1
[2025-12-20 03:52:33] -rw------- 1 boinc boinc    931840 Dec 20 03:52 result.tar.gz
03:52:35 (3343349): run_atlas exited; CPU time 16398.905444
03:52:35 (3343349): called boinc_finish(0)

</stderr_txt>
]]>

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