Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:56:12 (26749): wrapper (7.7.26015): starting
10:56:12 (26749): wrapper: running run_atlas (--nthreads 8)
[2025-12-19 10:56:12] Arguments: --nthreads 8
[2025-12-19 10:56:12] Threads: 8
[2025-12-19 10:56:12] Checking for CVMFS
[2025-12-19 10:56:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 10:56:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 10:56:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 10:56:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 10:56:12] 2.11.2.0 31396 150985 138376 154193 1 59 15418869 18432000 1833 130560 0 112576136 99.979 5968366 35133 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-19 10:56:12] CVMFS is ok
[2025-12-19 10:56:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-19 10:56:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-19 10:56:12] Further information can be found at the LHC@home message board.
[2025-12-19 10:56:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 10:56:12] Checking for apptainer binary...
[2025-12-19 10:56:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 10:56:12] Running /usr/bin/apptainer --version
[2025-12-19 10:56:12] apptainer version 1.3.2-1.el7
[2025-12-19 10:56:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 10:56:13] c-206-10.aglt2.org
[2025-12-19 10:56:13] apptainer works
[2025-12-19 10:56:13] Set ATHENA_PROC_NUMBER=8
[2025-12-19 10:56:13] Set ATHENA_CORE_NUMBER=8
[2025-12-19 10:56:13] Starting ATLAS job with PandaID=6935100532
[2025-12-19 10:56:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 14:02:02]  *** The last 200 lines of the pilot log: ***
[2025-12-19 14:02:02] 2025-12-19 19:01:25,824 | INFO     | total number of processed events: 400 (read)
[2025-12-19 14:02:02] 2025-12-19 19:01:25,825 | INFO     | executing command: lscpu
[2025-12-19 14:02:02] 2025-12-19 19:01:25,857 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-19 14:02:02] 2025-12-19 19:01:26,071 | INFO     | PID=30418 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-19 14:02:02] 2025-12-19 19:01:26,081 | INFO     | .. there are 3 such processes running
[2025-12-19 14:02:02] 2025-12-19 19:01:27,083 | INFO     | time since job start (11103s) is within the limit (174528.0s)
[2025-12-19 14:02:02] 2025-12-19 19:01:27,655 | INFO     | monitor loop #803: job 0:6935100532 is in state 'finished'
[2025-12-19 14:02:02] 2025-12-19 19:01:27,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,088 | INFO     | time since job start (11105s) is within the limit (174528.0s)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,221 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-19 14:02:02] 2025-12-19 19:01:29,224 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2444.6666666666665
[2025-12-19 14:02:02] 2025-12-19 19:01:29,227 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6935100532/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,227 | INFO     | extracted standard info from prmon json
[2025-12-19 14:02:02] 2025-12-19 19:01:29,228 | INFO     | extracted standard memory fields from prmon json
[2025-12-19 14:02:02] 2025-12-19 19:01:29,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-19 14:02:02] 2025-12-19 19:01:29,228 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-19 14:02:02] 2025-12-19 19:01:29,228 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-19 14:02:02] 2025-12-19 19:01:29,231 | INFO     | fitting pss+swap vs Time
[2025-12-19 14:02:02] 2025-12-19 19:01:29,231 | INFO     | sum of square deviations: 1869302025.5
[2025-12-19 14:02:02] 2025-12-19 19:01:29,232 | INFO     | sum of deviations: 26150054437.0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,232 | INFO     | mean x: 1766165329.5
[2025-12-19 14:02:02] 2025-12-19 19:01:29,232 | INFO     | mean y: 2498079.4505494507
[2025-12-19 14:02:02] 2025-12-19 19:01:29,232 | INFO     | intersect: -24704755687.534172
[2025-12-19 14:02:02] 2025-12-19 19:01:29,233 | INFO     | chi2: 1.4154035402419598
[2025-12-19 14:02:02] 2025-12-19 19:01:29,233 | INFO     | sum of square deviations: 1719429448.0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,234 | INFO     | sum of deviations: 25159936840.999996
[2025-12-19 14:02:02] 2025-12-19 19:01:29,234 | INFO     | mean x: 1766165177.0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,234 | INFO     | mean y: 2497073.2881355933
[2025-12-19 14:02:02] 2025-12-19 19:01:29,234 | INFO     | intersect: -25841310799.01578
[2025-12-19 14:02:02] 2025-12-19 19:01:29,234 | INFO     | chi2: 1.4164768924586404
[2025-12-19 14:02:02] 2025-12-19 19:01:29,234 | INFO     | current chi2=1.4164768924586404 (change=-0.07583365352449965 %)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,234 | INFO     | right removable region: 176
[2025-12-19 14:02:02] 2025-12-19 19:01:29,235 | INFO     | sum of square deviations: 1719429448.0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,236 | INFO     | sum of deviations: 31939356.000000283
[2025-12-19 14:02:02] 2025-12-19 19:01:29,236 | INFO     | mean x: 1766165482.0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,236 | INFO     | mean y: 2524307.6666666665
[2025-12-19 14:02:02] 2025-12-19 19:01:29,236 | INFO     | intersect: -30283196.095773306
[2025-12-19 14:02:02] 2025-12-19 19:01:29,236 | INFO     | chi2: 0.07338253192777677
[2025-12-19 14:02:02] 2025-12-19 19:01:29,236 | INFO     | current chi2=0.07338253192777677 (change=94.81543391397535 %)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,237 | INFO     | sum of square deviations: 1577789583.0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,237 | INFO     | sum of deviations: -1564511377.499999
[2025-12-19 14:02:02] 2025-12-19 19:01:29,237 | INFO     | mean x: 1766165634.5
[2025-12-19 14:02:02] 2025-12-19 19:01:29,238 | INFO     | mean y: 2525989.5988372094
[2025-12-19 14:02:02] 2025-12-19 19:01:29,238 | INFO     | intersect: 1753828102.058503
[2025-12-19 14:02:02] 2025-12-19 19:01:29,238 | INFO     | chi2: 0.06018782960554534
[2025-12-19 14:02:02] 2025-12-19 19:01:29,238 | INFO     | current chi2=0.06018782960554534 (change=17.98071281489399 %)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,238 | INFO     | left removable region: 20
[2025-12-19 14:02:02] 2025-12-19 19:01:29,238 | INFO     | sum of square deviations: 1177156955.0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,239 | INFO     | sum of deviations: 5272589259.5
[2025-12-19 14:02:02] 2025-12-19 19:01:29,239 | INFO     | mean x: 1766165756.5
[2025-12-19 14:02:02] 2025-12-19 19:01:29,239 | INFO     | mean y: 2516979.596153846
[2025-12-19 14:02:02] 2025-12-19 19:01:29,239 | INFO     | intersect: -7908294368.59708
[2025-12-19 14:02:02] 2025-12-19 19:01:29,240 | INFO     | chi2: 0.000518396924904567
[2025-12-19 14:02:02] 2025-12-19 19:01:29,240 | INFO     | current memory leak: 4.48 B/s (using 156 data points, chi2=0.00)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,240 | INFO     | could have reported an average CPU frequency of 2550 MHz (10 samples)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,240 | INFO     | ..............................
[2025-12-19 14:02:02] 2025-12-19 19:01:29,240 | INFO     | . Timing measurements:
[2025-12-19 14:02:02] 2025-12-19 19:01:29,240 | INFO     | . get job = 0 s
[2025-12-19 14:02:02] 2025-12-19 19:01:29,241 | INFO     | . initial setup = 2 s
[2025-12-19 14:02:02] 2025-12-19 19:01:29,241 | INFO     | . payload setup = 4 s
[2025-12-19 14:02:02] 2025-12-19 19:01:29,241 | INFO     | . stage-in = 0 s
[2025-12-19 14:02:02] 2025-12-19 19:01:29,241 | INFO     | . payload execution = 11074 s
[2025-12-19 14:02:02] 2025-12-19 19:01:29,241 | INFO     | . stage-out = 1 s
[2025-12-19 14:02:02] 2025-12-19 19:01:29,241 | INFO     | . log creation = 0 s
[2025-12-19 14:02:02] 2025-12-19 19:01:29,241 | INFO     | ..............................
[2025-12-19 14:02:02] 2025-12-19 19:01:29,395 | INFO     | 
[2025-12-19 14:02:02] 2025-12-19 19:01:29,395 | INFO     | job summary report
[2025-12-19 14:02:02] 2025-12-19 19:01:29,395 | INFO     | --------------------------------------------------
[2025-12-19 14:02:02] 2025-12-19 19:01:29,395 | INFO     | PanDA job id: 6935100532
[2025-12-19 14:02:02] 2025-12-19 19:01:29,395 | INFO     | task id: 47929280
[2025-12-19 14:02:02] 2025-12-19 19:01:29,396 | INFO     | errors: (none)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,396 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-19 14:02:02] 2025-12-19 19:01:29,396 | INFO     | pilot state: finished 
[2025-12-19 14:02:02] 2025-12-19 19:01:29,396 | INFO     | transexitcode: 0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,396 | INFO     | exeerrorcode: 0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,396 | INFO     | exeerrordiag: 
[2025-12-19 14:02:02] 2025-12-19 19:01:29,397 | INFO     | exitcode: 0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,397 | INFO     | exitmsg: OK
[2025-12-19 14:02:02] 2025-12-19 19:01:29,397 | INFO     | cpuconsumptiontime: 83090 s
[2025-12-19 14:02:02] 2025-12-19 19:01:29,397 | INFO     | nevents: 400
[2025-12-19 14:02:02] 2025-12-19 19:01:29,397 | INFO     | neventsw: 0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,398 | INFO     | pid: 4551
[2025-12-19 14:02:02] 2025-12-19 19:01:29,398 | INFO     | pgrp: 4551
[2025-12-19 14:02:02] 2025-12-19 19:01:29,398 | INFO     | corecount: 8
[2025-12-19 14:02:02] 2025-12-19 19:01:29,398 | INFO     | event service: False
[2025-12-19 14:02:02] 2025-12-19 19:01:29,398 | INFO     | sizes: {0: 2284029, 1: 2284029, 4: 2284319, 12: 2284347, 11082: 2313443, 11085: 2322441, 11086: 2322625, 11089: 2322819}
[2025-12-19 14:02:02] 2025-12-19 19:01:29,398 | INFO     | --------------------------------------------------
[2025-12-19 14:02:02] 2025-12-19 19:01:29,399 | INFO     | 
[2025-12-19 14:02:02] 2025-12-19 19:01:29,399 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-19 14:02:02] 2025-12-19 19:01:29,423 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,424 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,424 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,424 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,425 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,425 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,425 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 14:02:02] 2025-12-19 19:01:29,427 | INFO     | job 6935100532 has completed (purged errors)
[2025-12-19 14:02:02] 2025-12-19 19:01:29,428 | INFO     | overall cleanup function is called
[2025-12-19 14:02:02] 2025-12-19 19:01:30,435 | INFO     | --- collectZombieJob: --- 10, [4551]
[2025-12-19 14:02:02] 2025-12-19 19:01:30,436 | INFO     | zombie collector waiting for pid 4551
[2025-12-19 14:02:02] 2025-12-19 19:01:30,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 14:02:02] 2025-12-19 19:01:30,436 | INFO     | collected zombie processes
[2025-12-19 14:02:02] 2025-12-19 19:01:30,436 | INFO     | will attempt to kill all subprocesses of pid=4551
[2025-12-19 14:02:02] 2025-12-19 19:01:30,588 | INFO     | process IDs to be killed: [4551] (in reverse order)
[2025-12-19 14:02:02] 2025-12-19 19:01:30,650 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 14:02:02] 2025-12-19 19:01:30,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 14:02:02] 2025-12-19 19:01:30,657 | INFO     | did not find any defunct processes belonging to 4551
[2025-12-19 14:02:02] 2025-12-19 19:01:30,662 | INFO     | did not find any defunct processes belonging to 4551
[2025-12-19 14:02:02] 2025-12-19 19:01:30,662 | INFO     | ready for new job
[2025-12-19 14:02:02] 2025-12-19 19:01:30,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 14:02:02] 2025-12-19 19:01:30,664 | INFO     | ***************************************
[2025-12-19 14:02:02] 2025-12-19 19:01:30,664 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 14:02:02] 2025-12-19 19:01:30,664 | INFO     | ***************************************
[2025-12-19 14:02:02] 2025-12-19 19:01:30,665 | INFO     | 
[2025-12-19 14:02:02] 2025-12-19 19:01:30,666 | INFO     | architecture information:
[2025-12-19 14:02:02] 2025-12-19 19:01:30,666 | INFO     | executing command: cat /etc/os-release
[2025-12-19 14:02:02] 2025-12-19 19:01:30,684 | INFO     | cat /etc/os-release:
[2025-12-19 14:02:02] NAME="CentOS Linux"
[2025-12-19 14:02:02] VERSION="7 (Core)"
[2025-12-19 14:02:02] ID="centos"
[2025-12-19 14:02:02] ID_LIKE="rhel fedora"
[2025-12-19 14:02:02] VERSION_ID="7"
[2025-12-19 14:02:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 14:02:02] ANSI_COLOR="0;31"
[2025-12-19 14:02:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 14:02:02] HOME_URL="https://www.centos.org/"
[2025-12-19 14:02:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 14:02:02] 
[2025-12-19 14:02:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 14:02:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 14:02:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 14:02:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 14:02:02] 
[2025-12-19 14:02:02] 2025-12-19 19:01:30,685 | INFO     | ***************************************
[2025-12-19 14:02:02] 2025-12-19 19:01:31,188 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-19 14:02:02] 2025-12-19 19:01:31,374 | INFO     | sufficient remaining disk space (27761049600 B)
[2025-12-19 14:02:02] 2025-12-19 19:01:31,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 14:02:02] 2025-12-19 19:01:31,374 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 14:02:02] 2025-12-19 19:01:31,374 | INFO     | update_server=False
[2025-12-19 14:02:02] 2025-12-19 19:01:31,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 14:02:02] 2025-12-19 19:01:31,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 14:02:02] 2025-12-19 19:01:31,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 14:02:02] 2025-12-19 19:01:31,375 | INFO     | aborting loop
[2025-12-19 14:02:02] 2025-12-19 19:01:31,676 | INFO     | all data control threads have been joined
[2025-12-19 14:02:02] 2025-12-19 19:01:31,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 14:02:02] 2025-12-19 19:01:32,381 | INFO     | [job] queue monitor thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:32,381 | INFO     | [job] job monitor thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:32,382 | INFO     | [job] retrieve thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:32,464 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 14:02:02] 2025-12-19 19:01:32,497 | INFO     | all job control threads have been joined
[2025-12-19 14:02:02] 2025-12-19 19:01:32,682 | INFO     | [data] control thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:32,807 | INFO     | all payload control threads have been joined
[2025-12-19 14:02:02] 2025-12-19 19:01:33,008 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,017 | INFO     | [payload] validate_post thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,098 | INFO     | [payload] failed_post thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,167 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,407 | INFO     | [data] copytool_in thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,417 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,503 | INFO     | [job] control thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,795 | INFO     | [job] validate thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,812 | INFO     | [payload] control thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:33,826 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:34,471 | INFO     | [data] copytool_out thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:35,842 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 14:02:02] 2025-12-19 19:01:42,107 | INFO     | [monitor] cgroup control has ended
[2025-12-19 14:02:02] 2025-12-19 19:01:43,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140093749331776)>', '<ExcThread(monitor, started 140093167757056)>']
[2025-12-19 14:02:02] 2025-12-19 19:01:48,595 | INFO     | all workflow threads have been joined
[2025-12-19 14:02:02] 2025-12-19 19:01:48,595 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 14:02:02] 2025-12-19 19:01:48,595 | INFO     | traces error code: 0
[2025-12-19 14:02:02] 2025-12-19 19:01:48,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 14:02:02] 2025-12-19 19:02:02,321 | INFO     | PID=30418 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-19 14:02:02] 2025-12-19 19:02:02,321 | INFO     | .. there are 3 such processes running
[2025-12-19 14:02:02] 2025-12-19 19:02:02,321 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 14:02:02] 2025-12-19 19:02:02,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 14:02:02] 2025-12-19 19:02:02,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 14:02:02] 2025-12-19 19:02:02,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 14:02:02] 2025-12-19 19:02:02,322 | INFO     | [monitor] control thread has ended
[2025-12-19 14:02:02] 2025-12-19 19:02:02,448 [wrapper] ==== pilot stdout END ====
[2025-12-19 14:02:02] 2025-12-19 19:02:02,451 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 14:02:02] 2025-12-19 19:02:02,458 [wrapper] pilotpid: 30418
[2025-12-19 14:02:02] 2025-12-19 19:02:02,460 [wrapper] Pilot exit status: 0
[2025-12-19 14:02:02] 2025-12-19 19:02:02,468 [wrapper] pandaids: 6935100532
[2025-12-19 14:02:02] 2025-12-19 19:02:02,496 [wrapper] cleanup supervisor_pilot 27779 30419
[2025-12-19 14:02:02] 2025-12-19 19:02:02,498 [wrapper] Test setup, not cleaning
[2025-12-19 14:02:02] 2025-12-19 19:02:02,500 [wrapper] apfmon messages muted
[2025-12-19 14:02:02] 2025-12-19 19:02:02,503 [wrapper] ==== wrapper stdout END ====
[2025-12-19 14:02:02] 2025-12-19 19:02:02,505 [wrapper] ==== wrapper stderr END ====
[2025-12-19 14:02:02]  *** Error codes and diagnostics ***
[2025-12-19 14:02:02]     "exeErrorCode": 0,
[2025-12-19 14:02:02]     "exeErrorDiag": "",
[2025-12-19 14:02:02]     "pilotErrorCode": 0,
[2025-12-19 14:02:02]     "pilotErrorDiag": "",
[2025-12-19 14:02:02]  *** Listing of results directory ***
[2025-12-19 14:02:02] total 443896
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas    579449 Dec 19 00:06 pilot3.tar.gz
[2025-12-19 14:02:02] -rwx------ 1 boincer umatlas     36322 Dec 19 00:06 runpilot2-wrapper.sh
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas      5112 Dec 19 00:08 queuedata.json
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas       100 Dec 19 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 14:02:02] -rwxr-xr-x 1 boincer umatlas      7986 Dec 19 10:56 run_atlas
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas       105 Dec 19 10:56 job.xml
[2025-12-19 14:02:02] -rw-r--r-- 2 boincer umatlas 257669995 Dec 19 10:56 EVNT.47929278._000035.pool.root.1
[2025-12-19 14:02:02] -rw-r--r-- 2 boincer umatlas     15847 Dec 19 10:56 start_atlas.sh
[2025-12-19 14:02:02] drwxrwx--x 2 boincer umatlas      4096 Dec 19 10:56 shared
[2025-12-19 14:02:02] -rw-r--r-- 2 boincer umatlas    592405 Dec 19 10:56 input.tar.gz
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas         0 Dec 19 10:56 boinc_lockfile
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas      2564 Dec 19 10:56 pandaJob.out
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas        57 Dec 19 10:56 setup.sh.local
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas    988162 Dec 19 10:56 agis_schedconf.cvmfs.json
[2025-12-19 14:02:02] drwx------ 5 boincer umatlas      4096 Dec 19 10:56 pilot3
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas      5952 Dec 19 13:58 init_data.xml
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas 189033246 Dec 19 14:00 HITS.47929280._000780.pool.root.1
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas       530 Dec 19 14:01 boinc_task_state.xml
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas        95 Dec 19 14:01 pilot_heartbeat.json
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas      1053 Dec 19 14:01 memory_monitor_summary.json
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas   1516240 Dec 19 14:01 agis_ddmendpoints.agis.ALL.json
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas    412610 Dec 19 14:01 log.47929280._000780.job.log.tgz.1
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas      7851 Dec 19 14:01 heartbeat.json
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas      8192 Dec 19 14:02 boinc_mmap_file
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas        28 Dec 19 14:02 wrapper_checkpoint.txt
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas       820 Dec 19 14:02 pilotlog.txt
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas   1557316 Dec 19 14:02 log.47929280._000780.job.log.1
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas       357 Dec 19 14:02 output.list
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas       620 Dec 19 14:02 runtime_log
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas   1986560 Dec 19 14:02 result.tar.gz
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas       662 Dec 19 14:02 zIBLDmgshq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhbaKDm6Lhrtn.diag
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas      9343 Dec 19 14:02 runtime_log.err
[2025-12-19 14:02:02] -rw-r--r-- 1 boincer umatlas     21413 Dec 19 14:02 stderr.txt
[2025-12-19 14:02:02] HITS file was successfully produced:
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas 189033246 Dec 19 14:00 shared/HITS.pool.root.1
[2025-12-19 14:02:02]  *** Contents of shared directory: ***
[2025-12-19 14:02:02] total 438776
[2025-12-19 14:02:02] -rw-r--r-- 2 boincer umatlas 257669995 Dec 19 10:56 ATLAS.root_0
[2025-12-19 14:02:02] -rw-r--r-- 2 boincer umatlas     15847 Dec 19 10:56 start_atlas.sh
[2025-12-19 14:02:02] -rw-r--r-- 2 boincer umatlas    592405 Dec 19 10:56 input.tar.gz
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas 189033246 Dec 19 14:00 HITS.pool.root.1
[2025-12-19 14:02:02] -rw------- 1 boincer umatlas   1986560 Dec 19 14:02 result.tar.gz
14:02:04 (26749): run_atlas exited; CPU time 83203.904108
14:02:04 (26749): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN