Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:04:18 (3570683): wrapper (7.7.26015): starting
09:04:18 (3570683): wrapper: running run_atlas (--nthreads 4)
[2025-12-20 09:04:18] Arguments: --nthreads 4
[2025-12-20 09:04:18] Threads: 4
[2025-12-20 09:04:18] Checking for CVMFS
[2025-12-20 09:04:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-20 09:04:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-20 09:04:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-20 09:04:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-20 09:04:19] 2.9.2.0 504409 10247 100572 154218 3 57 21654361 36864000 0 130560 0 8046758 99.991 371554 11252 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-20 09:04:19] CVMFS is ok
[2025-12-20 09:04:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-20 09:04:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-20 09:04:19] Further information can be found at the LHC@home message board.
[2025-12-20 09:04:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-20 09:04:19] Checking for apptainer binary...
[2025-12-20 09:04:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-20 09:04:19] Running /usr/bin/apptainer --version
[2025-12-20 09:04:19] apptainer version 1.4.1-1.1
[2025-12-20 09:04:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-20 09:04:19] thA314a
[2025-12-20 09:04:19] apptainer works
[2025-12-20 09:04:19] Set ATHENA_PROC_NUMBER=4
[2025-12-20 09:04:19] Set ATHENA_CORE_NUMBER=4
[2025-12-20 09:04:19] Starting ATLAS job with PandaID=6934988352
[2025-12-20 09:04:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-20 10:15:37]  *** The last 200 lines of the pilot log: ***
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,391 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,391 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-20 10:15:37] 2025-12-20 09:14:58,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,391 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-20 10:15:37] 2025-12-20 09:14:58,391 | INFO     | job 6934988352 has completed (purged errors)
[2025-12-20 10:15:37] 2025-12-20 09:14:58,391 | INFO     | overall cleanup function is called
[2025-12-20 10:15:37] 2025-12-20 09:14:59,397 | INFO     | --- collectZombieJob: --- 10, [3581058]
[2025-12-20 10:15:37] 2025-12-20 09:14:59,398 | INFO     | zombie collector waiting for pid 3581058
[2025-12-20 10:15:37] 2025-12-20 09:14:59,398 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-20 10:15:37] 2025-12-20 09:14:59,398 | INFO     | collected zombie processes
[2025-12-20 10:15:37] 2025-12-20 09:14:59,398 | INFO     | will attempt to kill all subprocesses of pid=3581058
[2025-12-20 10:15:37] 2025-12-20 09:14:59,441 | INFO     | process IDs to be killed: [3581058] (in reverse order)
[2025-12-20 10:15:37] 2025-12-20 09:14:59,472 | WARNING  | found no corresponding commands to process id(s)
[2025-12-20 10:15:37] 2025-12-20 09:14:59,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-20 10:15:37] 2025-12-20 09:14:59,474 | INFO     | did not find any defunct processes belonging to 3581058
[2025-12-20 10:15:37] 2025-12-20 09:14:59,475 | INFO     | did not find any defunct processes belonging to 3581058
[2025-12-20 10:15:37] 2025-12-20 09:14:59,476 | INFO     | ready for new job
[2025-12-20 10:15:37] 2025-12-20 09:14:59,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-20 10:15:37] 2025-12-20 09:14:59,476 | INFO     | ***************************************
[2025-12-20 10:15:37] 2025-12-20 09:14:59,476 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-20 10:15:37] 2025-12-20 09:14:59,476 | INFO     | ***************************************
[2025-12-20 10:15:37] 2025-12-20 09:14:59,476 | INFO     | 
[2025-12-20 10:15:37] 2025-12-20 09:14:59,477 | INFO     | architecture information:
[2025-12-20 10:15:37] 2025-12-20 09:14:59,477 | INFO     | executing command: cat /etc/os-release
[2025-12-20 10:15:37] 2025-12-20 09:14:59,490 | INFO     | cat /etc/os-release:
[2025-12-20 10:15:37] NAME="CentOS Linux"
[2025-12-20 10:15:37] VERSION="7 (Core)"
[2025-12-20 10:15:37] ID="centos"
[2025-12-20 10:15:37] ID_LIKE="rhel fedora"
[2025-12-20 10:15:37] VERSION_ID="7"
[2025-12-20 10:15:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-20 10:15:37] ANSI_COLOR="0;31"
[2025-12-20 10:15:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-20 10:15:37] HOME_URL="https://www.centos.org/"
[2025-12-20 10:15:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-20 10:15:37] 
[2025-12-20 10:15:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-20 10:15:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-20 10:15:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-20 10:15:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-20 10:15:37] 
[2025-12-20 10:15:37] 2025-12-20 09:14:59,490 | INFO     | ***************************************
[2025-12-20 10:15:37] 2025-12-20 09:14:59,993 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-20 10:15:37] 2025-12-20 09:15:00,010 | INFO     | sufficient remaining disk space (236778946560 B)
[2025-12-20 10:15:37] 2025-12-20 09:15:00,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-20 10:15:37] 2025-12-20 09:15:00,010 | INFO     | current server update state: UPDATING_FINAL
[2025-12-20 10:15:37] 2025-12-20 09:15:00,010 | INFO     | update_server=False
[2025-12-20 10:15:37] 2025-12-20 09:15:00,011 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-20 10:15:37] 2025-12-20 09:15:00,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-20 10:15:37] 2025-12-20 09:15:00,150 | INFO     | all job control threads have been joined
[2025-12-20 10:15:37] 2025-12-20 09:15:00,290 | INFO     | all data control threads have been joined
[2025-12-20 10:15:37] 2025-12-20 09:15:00,943 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-20 10:15:37] 2025-12-20 09:15:00,943 | INFO     | aborting loop
[2025-12-20 10:15:37] 2025-12-20 09:15:01,016 | INFO     | [job] retrieve thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:01,051 | INFO     | [payload] execute_payloads thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:01,104 | INFO     | [payload] validate_pre thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:01,155 | INFO     | [job] control thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:01,227 | INFO     | all payload control threads have been joined
[2025-12-20 10:15:37] 2025-12-20 09:15:01,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-20 10:15:37] 2025-12-20 09:15:01,296 | INFO     | [data] control thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:01,380 | INFO     | [data] copytool_in thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:01,391 | INFO     | [payload] failed_post thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:01,908 | INFO     | [payload] validate_post thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:01,949 | INFO     | [job] job monitor thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:02,233 | INFO     | [payload] control thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:02,411 | INFO     | [job] validate thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:02,507 | INFO     | [job] create_data_payload thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:02,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-20 10:15:37] 2025-12-20 09:15:03,281 | INFO     | [data] copytool_out thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:03,986 | INFO     | [job] queue monitor thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:04,016 | INFO     | [data] queue_monitor thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:10,782 | INFO     | job.realtimelogging is not enabled
[2025-12-20 10:15:37] 2025-12-20 09:15:11,788 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-20 10:15:37] 2025-12-20 09:15:30,852 | INFO     | PID=3574477 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-20 10:15:37] 2025-12-20 09:15:30,852 | INFO     | found 0 job(s) in 20 queues
[2025-12-20 10:15:37] 2025-12-20 09:15:30,852 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-20 10:15:37] 2025-12-20 09:15:30,852 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-20 10:15:37] 2025-12-20 09:15:31,373 | INFO     | [monitor] cgroup control has ended
[2025-12-20 10:15:37] 2025-12-20 09:15:31,947 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401568073536)>', '<ExcThread(monitor, started 140400778004224)>']
[2025-12-20 10:15:37] 2025-12-20 09:15:32,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-20 10:15:37] 2025-12-20 09:15:32,863 | INFO     | [monitor] control thread has ended
[2025-12-20 10:15:37] 2025-12-20 09:15:36,973 | INFO     | all workflow threads have been joined
[2025-12-20 10:15:37] 2025-12-20 09:15:36,973 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-20 10:15:37] 2025-12-20 09:15:36,973 | INFO     | traces error code: 0
[2025-12-20 10:15:37] 2025-12-20 09:15:36,974 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-20 10:15:37] 2025-12-20 09:15:37,042 [wrapper] ==== pilot stdout END ====
[2025-12-20 10:15:37] 2025-12-20 09:15:37,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-20 10:15:37] 2025-12-20 09:15:37,050 [wrapper] pilotpid: 3574477
[2025-12-20 10:15:37] 2025-12-20 09:15:37,054 [wrapper] Pilot exit status: 0
[2025-12-20 10:15:37] 2025-12-20 09:15:37,065 [wrapper] pandaids: 6934988352
[2025-12-20 10:15:37] 2025-12-20 09:15:37,086 [wrapper] cleanup supervisor_pilot 3590584 3574478
[2025-12-20 10:15:37] 2025-12-20 09:15:37,089 [wrapper] Test setup, not cleaning
[2025-12-20 10:15:37] 2025-12-20 09:15:37,093 [wrapper] apfmon messages muted
[2025-12-20 10:15:37] 2025-12-20 09:15:37,096 [wrapper] ==== wrapper stdout END ====
[2025-12-20 10:15:37] 2025-12-20 09:15:37,099 [wrapper] ==== wrapper stderr END ====
[2025-12-20 10:15:37]  *** Error codes and diagnostics ***
[2025-12-20 10:15:37]     "exeErrorCode": 0,
[2025-12-20 10:15:37]     "exeErrorDiag": "",
[2025-12-20 10:15:37]     "pilotErrorCode": 0,
[2025-12-20 10:15:37]     "pilotErrorDiag": "",
[2025-12-20 10:15:37]  *** Listing of results directory ***
[2025-12-20 10:15:37] total 429236
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc    579449 Dec 19 06:06 pilot3.tar.gz
[2025-12-20 10:15:37] -rwx------ 1 boinc boinc     36322 Dec 19 06:08 runpilot2-wrapper.sh
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc      5112 Dec 19 06:11 queuedata.json
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc       100 Dec 20 09:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-20 10:15:37] -rwxr-xr-x 1 boinc boinc      7986 Dec 20 09:04 run_atlas
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc       105 Dec 20 09:04 job.xml
[2025-12-20 10:15:37] -rw-r--r-- 2 boinc boinc 252072356 Dec 20 09:04 EVNT.47929278._000012.pool.root.1
[2025-12-20 10:15:37] -rw-r--r-- 2 boinc boinc    592400 Dec 20 09:04 input.tar.gz
[2025-12-20 10:15:37] -rw-r--r-- 2 boinc boinc     15847 Dec 20 09:04 start_atlas.sh
[2025-12-20 10:15:37] drwxrwx--x 2 boinc boinc      4096 Dec 20 09:04 shared
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc         0 Dec 20 09:04 boinc_setup_complete
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc      6371 Dec 20 09:04 init_data.xml
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc         0 Dec 20 09:04 boinc_lockfile
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc      2563 Dec 20 09:04 pandaJob.out
[2025-12-20 10:15:37] -rw------- 1 boinc boinc    988146 Dec 20 09:04 agis_schedconf.cvmfs.json
[2025-12-20 10:15:37] -rw------- 1 boinc boinc   1516240 Dec 20 09:04 agis_ddmendpoints.agis.ALL.json
[2025-12-20 10:15:37] drwx------ 5 boinc boinc      4096 Dec 20 09:04 pilot3
[2025-12-20 10:15:37] -rw------- 1 boinc boinc 181799255 Dec 20 10:14 HITS.47929280._000507.pool.root.1
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc       529 Dec 20 10:14 boinc_task_state.xml
[2025-12-20 10:15:37] -rw------- 1 boinc boinc        95 Dec 20 10:14 pilot_heartbeat.json
[2025-12-20 10:15:37] -rw------- 1 boinc boinc      1019 Dec 20 10:14 memory_monitor_summary.json
[2025-12-20 10:15:37] -rw------- 1 boinc boinc    250465 Dec 20 10:14 log.47929280._000507.job.log.tgz.1
[2025-12-20 10:15:37] -rw------- 1 boinc boinc      7752 Dec 20 10:14 heartbeat.json
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc      8192 Dec 20 10:15 boinc_mmap_file
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc        27 Dec 20 10:15 wrapper_checkpoint.txt
[2025-12-20 10:15:37] -rw------- 1 boinc boinc      4824 Dec 20 10:15 pilotlog.txt
[2025-12-20 10:15:37] -rw------- 1 boinc boinc    629540 Dec 20 10:15 log.47929280._000507.job.log.1
[2025-12-20 10:15:37] -rw------- 1 boinc boinc       357 Dec 20 10:15 output.list
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc       620 Dec 20 10:15 runtime_log
[2025-12-20 10:15:37] -rw------- 1 boinc boinc    901120 Dec 20 10:15 result.tar.gz
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc      8902 Dec 20 10:15 runtime_log.err
[2025-12-20 10:15:37] -rw------- 1 boinc boinc       659 Dec 20 10:15 B3WLDmSuhq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYVfKDmBUmJbm.diag
[2025-12-20 10:15:37] -rw-r--r-- 1 boinc boinc     12238 Dec 20 10:15 stderr.txt
[2025-12-20 10:15:37] HITS file was successfully produced:
[2025-12-20 10:15:37] -rw------- 1 boinc boinc 181799255 Dec 20 10:14 shared/HITS.pool.root.1
[2025-12-20 10:15:37]  *** Contents of shared directory: ***
[2025-12-20 10:15:37] total 425192
[2025-12-20 10:15:37] -rw-r--r-- 2 boinc boinc 252072356 Dec 20 09:04 ATLAS.root_0
[2025-12-20 10:15:37] -rw-r--r-- 2 boinc boinc    592400 Dec 20 09:04 input.tar.gz
[2025-12-20 10:15:37] -rw-r--r-- 2 boinc boinc     15847 Dec 20 09:04 start_atlas.sh
[2025-12-20 10:15:37] -rw------- 1 boinc boinc 181799255 Dec 20 10:14 HITS.pool.root.1
[2025-12-20 10:15:37] -rw------- 1 boinc boinc    901120 Dec 20 10:15 result.tar.gz
10:15:38 (3570683): run_atlas exited; CPU time 15904.846213
10:15:38 (3570683): called boinc_finish(0)

</stderr_txt>
]]>

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