Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:19:43 (504177): wrapper (7.7.26015): starting
18:19:43 (504177): wrapper: running run_atlas (--nthreads 3)
[2025-12-19 18:19:43] Arguments: --nthreads 3
[2025-12-19 18:19:43] Threads: 3
[2025-12-19 18:19:43] Checking for CVMFS
[2025-12-19 18:19:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 18:19:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 18:19:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 18:19:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 18:19:43] 2.9.2.0 3111 1677 76812 154197 2 56 22799121 36864000 0 130560 0 1127291 99.990 63038 21911 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-19 18:19:43] CVMFS is ok
[2025-12-19 18:19:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-19 18:19:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-19 18:19:43] Further information can be found at the LHC@home message board.
[2025-12-19 18:19:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 18:19:43] Checking for apptainer binary...
[2025-12-19 18:19:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 18:19:43] Running /usr/bin/apptainer --version
[2025-12-19 18:19:43] apptainer version 1.4.1-1.1
[2025-12-19 18:19:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 18:19:43] legendA163
[2025-12-19 18:19:43] apptainer works
[2025-12-19 18:19:43] Set ATHENA_PROC_NUMBER=3
[2025-12-19 18:19:43] Set ATHENA_CORE_NUMBER=3
[2025-12-19 18:19:43] Starting ATLAS job with PandaID=6934551893
[2025-12-19 18:19:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 20:16:14]  *** The last 200 lines of the pilot log: ***
[2025-12-19 20:16:14] 2025-12-19 19:15:37,178 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-19 20:16:14] 2025-12-19 19:15:37,353 | WARNING  | process 514361 can no longer be monitored (due to stat problems) - aborting
[2025-12-19 20:16:14] 2025-12-19 19:15:37,353 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6934551893/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 20:16:14] 2025-12-19 19:15:37,404 | INFO     | number of running child processes to parent process 514361: 1
[2025-12-19 20:16:14] 2025-12-19 19:15:37,404 | INFO     | maximum number of monitored processes: 6
[2025-12-19 20:16:14] 2025-12-19 19:15:38,014 | INFO     | PID=507899 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-19 20:16:14] 2025-12-19 19:15:39,015 | INFO     | time since job start (6950s) is within the limit (174528.0s)
[2025-12-19 20:16:14] 2025-12-19 19:15:39,908 | INFO     | monitor loop #532: job 0:6934551893 is in state 'finished'
[2025-12-19 20:16:14] 2025-12-19 19:15:39,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,020 | INFO     | time since job start (6952s) is within the limit (174528.0s)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,667 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-19 20:16:14] 2025-12-19 19:15:41,668 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3725.241916666666
[2025-12-19 20:16:14] 2025-12-19 19:15:41,669 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6934551893/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,669 | INFO     | extracted standard info from prmon json
[2025-12-19 20:16:14] 2025-12-19 19:15:41,669 | INFO     | extracted standard memory fields from prmon json
[2025-12-19 20:16:14] 2025-12-19 19:15:41,670 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-19 20:16:14] 2025-12-19 19:15:41,670 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-19 20:16:14] 2025-12-19 19:15:41,670 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-19 20:16:14] 2025-12-19 19:15:41,670 | INFO     | fitting pss+swap vs Time
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | sum of square deviations: 459366752.5
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | sum of deviations: -19748366645.499996
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | mean x: 1766168256.5
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | mean y: 2480926.4122807016
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | intersect: 75930784612.26836
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | chi2: 1.7425291790967194
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | sum of square deviations: 401533110.0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | sum of deviations: -17347149134.0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | mean x: 1766168104.0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | mean y: 2487260.623853211
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | intersect: 76304990672.61401
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | chi2: 1.7419253143637374
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | current chi2=1.7419253143637374 (change=0.0346544976248286 %)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,671 | INFO     | right removable region: 108
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | sum of square deviations: 401533110.0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | sum of deviations: -34880024114.0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | mean x: 1766168409.0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | mean y: 2519796.853211009
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | intersect: 153424479682.81384
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | chi2: 0.17899670335826423
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | current chi2=0.17899670335826423 (change=89.72776436082113 %)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | sum of square deviations: 348769330.0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | sum of deviations: -31621271134.000004
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | mean x: 1766168561.5
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | mean y: 2510360.7115384615
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | intersect: 160132688526.14328
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | chi2: 0.17442189284627857
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | current chi2=0.17442189284627857 (change=2.555807132843736 %)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | left removable region: 20
[2025-12-19 20:16:14] 2025-12-19 19:15:41,672 | INFO     | sum of square deviations: 211285822.0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | sum of deviations: -22068010595.500004
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | mean x: 1766168683.5
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | mean y: 2496369.284090909
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | intersect: 184472182276.1704
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | chi2: 0.15645276512845194
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | current memory leak: -104.45 B/s (using 88 data points, chi2=0.16)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | could have reported an average CPU frequency of 3881 MHz (7 samples)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | ..............................
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | . Timing measurements:
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | . get job = 0 s
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | . initial setup = 1 s
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | . payload setup = 3 s
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | . stage-in = 0 s
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | . payload execution = 6925 s
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | . stage-out = 0 s
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | . log creation = 0 s
[2025-12-19 20:16:14] 2025-12-19 19:15:41,673 | INFO     | ..............................
[2025-12-19 20:16:14] 2025-12-19 19:15:41,702 | INFO     | 
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | job summary report
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | --------------------------------------------------
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | PanDA job id: 6934551893
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | task id: 47898836
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | errors: (none)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | pilot state: finished 
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | transexitcode: 0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | exeerrorcode: 0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | exeerrordiag: 
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | exitcode: 0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | exitmsg: OK
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | cpuconsumptiontime: 20148 s
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | nevents: 400
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | neventsw: 0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | pid: 514361
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | pgrp: 514361
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | corecount: 3
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | event service: False
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | sizes: {0: 2284013, 3: 2284275, 11: 2284303, 6932: 2311651, 6933: 2320711, 6939: 2320849}
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | --------------------------------------------------
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | 
[2025-12-19 20:16:14] 2025-12-19 19:15:41,703 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-19 20:16:14] 2025-12-19 19:15:41,715 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,715 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,715 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | job 6934551893 has completed (purged errors)
[2025-12-19 20:16:14] 2025-12-19 19:15:41,716 | INFO     | overall cleanup function is called
[2025-12-19 20:16:14] 2025-12-19 19:15:42,723 | INFO     | --- collectZombieJob: --- 10, [514361]
[2025-12-19 20:16:14] 2025-12-19 19:15:42,723 | INFO     | zombie collector waiting for pid 514361
[2025-12-19 20:16:14] 2025-12-19 19:15:42,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 20:16:14] 2025-12-19 19:15:42,723 | INFO     | collected zombie processes
[2025-12-19 20:16:14] 2025-12-19 19:15:42,723 | INFO     | will attempt to kill all subprocesses of pid=514361
[2025-12-19 20:16:14] 2025-12-19 19:15:42,779 | INFO     | process IDs to be killed: [514361] (in reverse order)
[2025-12-19 20:16:14] 2025-12-19 19:15:42,807 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 20:16:14] 2025-12-19 19:15:42,807 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 20:16:14] 2025-12-19 19:15:42,809 | INFO     | did not find any defunct processes belonging to 514361
[2025-12-19 20:16:14] 2025-12-19 19:15:42,810 | INFO     | did not find any defunct processes belonging to 514361
[2025-12-19 20:16:14] 2025-12-19 19:15:42,810 | INFO     | ready for new job
[2025-12-19 20:16:14] 2025-12-19 19:15:42,810 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 20:16:14] 2025-12-19 19:15:42,811 | INFO     | ***************************************
[2025-12-19 20:16:14] 2025-12-19 19:15:42,811 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 20:16:14] 2025-12-19 19:15:42,811 | INFO     | ***************************************
[2025-12-19 20:16:14] 2025-12-19 19:15:42,811 | INFO     | 
[2025-12-19 20:16:14] 2025-12-19 19:15:42,812 | INFO     | architecture information:
[2025-12-19 20:16:14] 2025-12-19 19:15:42,812 | INFO     | executing command: cat /etc/os-release
[2025-12-19 20:16:14] 2025-12-19 19:15:42,821 | INFO     | cat /etc/os-release:
[2025-12-19 20:16:14] NAME="CentOS Linux"
[2025-12-19 20:16:14] VERSION="7 (Core)"
[2025-12-19 20:16:14] ID="centos"
[2025-12-19 20:16:14] ID_LIKE="rhel fedora"
[2025-12-19 20:16:14] VERSION_ID="7"
[2025-12-19 20:16:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 20:16:14] ANSI_COLOR="0;31"
[2025-12-19 20:16:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 20:16:14] HOME_URL="https://www.centos.org/"
[2025-12-19 20:16:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 20:16:14] 
[2025-12-19 20:16:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 20:16:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 20:16:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 20:16:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 20:16:14] 
[2025-12-19 20:16:14] 2025-12-19 19:15:42,821 | INFO     | ***************************************
[2025-12-19 20:16:14] 2025-12-19 19:15:43,324 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-19 20:16:14] 2025-12-19 19:15:43,338 | INFO     | sufficient remaining disk space (382235312128 B)
[2025-12-19 20:16:14] 2025-12-19 19:15:43,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 20:16:14] 2025-12-19 19:15:43,338 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 20:16:14] 2025-12-19 19:15:43,338 | INFO     | update_server=False
[2025-12-19 20:16:14] 2025-12-19 19:15:43,338 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 20:16:14] 2025-12-19 19:15:43,338 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 20:16:14] 2025-12-19 19:15:43,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 20:16:14] 2025-12-19 19:15:43,417 | INFO     | aborting loop
[2025-12-19 20:16:14] 2025-12-19 19:15:43,999 | INFO     | all data control threads have been joined
[2025-12-19 20:16:14] 2025-12-19 19:15:44,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 20:16:14] 2025-12-19 19:15:44,344 | INFO     | [job] retrieve thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:44,344 | INFO     | [job] queue monitor thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:44,423 | INFO     | [job] job monitor thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:44,599 | INFO     | all payload control threads have been joined
[2025-12-19 20:16:14] 2025-12-19 19:15:44,738 | INFO     | [payload] failed_post thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:44,871 | INFO     | [data] copytool_in thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:44,911 | INFO     | all job control threads have been joined
[2025-12-19 20:16:14] 2025-12-19 19:15:45,003 | INFO     | [data] control thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:45,071 | INFO     | [job] validate thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:45,120 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:45,177 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:45,189 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:45,222 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:45,605 | INFO     | [payload] control thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:45,817 | INFO     | [payload] validate_post thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:45,917 | INFO     | [job] control thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:46,235 | INFO     | [data] copytool_out thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:46,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 20:16:14] 2025-12-19 19:15:50,763 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 20:16:14] 2025-12-19 19:15:57,229 | INFO     | [monitor] cgroup control has ended
[2025-12-19 20:16:14] 2025-12-19 19:15:58,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139854836422464)>', '<ExcThread(monitor, started 139854117590784)>']
[2025-12-19 20:16:14] 2025-12-19 19:16:03,098 | INFO     | all workflow threads have been joined
[2025-12-19 20:16:14] 2025-12-19 19:16:03,098 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 20:16:14] 2025-12-19 19:16:03,098 | INFO     | traces error code: 0
[2025-12-19 20:16:14] 2025-12-19 19:16:03,099 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 20:16:14] 2025-12-19 19:16:14,173 | INFO     | PID=507899 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-19 20:16:14] 2025-12-19 19:16:14,174 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 20:16:14] 2025-12-19 19:16:14,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 20:16:14] 2025-12-19 19:16:14,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 20:16:14] 2025-12-19 19:16:14,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 20:16:14] 2025-12-19 19:16:14,174 | INFO     | [monitor] control thread has ended
[2025-12-19 20:16:14] 2025-12-19 19:16:14,220 [wrapper] ==== pilot stdout END ====
[2025-12-19 20:16:14] 2025-12-19 19:16:14,223 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 20:16:14] 2025-12-19 19:16:14,225 [wrapper] pilotpid: 507899
[2025-12-19 20:16:14] 2025-12-19 19:16:14,228 [wrapper] Pilot exit status: 0
[2025-12-19 20:16:14] 2025-12-19 19:16:14,236 [wrapper] pandaids: 6934551893
[2025-12-19 20:16:14] 2025-12-19 19:16:14,255 [wrapper] cleanup supervisor_pilot  532216 507900
[2025-12-19 20:16:14] 2025-12-19 19:16:14,257 [wrapper] Test setup, not cleaning
[2025-12-19 20:16:14] 2025-12-19 19:16:14,260 [wrapper] apfmon messages muted
[2025-12-19 20:16:14] 2025-12-19 19:16:14,262 [wrapper] ==== wrapper stdout END ====
[2025-12-19 20:16:14] 2025-12-19 19:16:14,265 [wrapper] ==== wrapper stderr END ====
[2025-12-19 20:16:14]  *** Error codes and diagnostics ***
[2025-12-19 20:16:14]     "exeErrorCode": 0,
[2025-12-19 20:16:14]     "exeErrorDiag": "",
[2025-12-19 20:16:14]     "pilotErrorCode": 0,
[2025-12-19 20:16:14]     "pilotErrorDiag": "",
[2025-12-19 20:16:14]  *** Listing of results directory ***
[2025-12-19 20:16:14] total 408876
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc    579449 Dec 19 00:10 pilot3.tar.gz
[2025-12-19 20:16:14] -rwx------ 1 boinc boinc     36322 Dec 19 00:15 runpilot2-wrapper.sh
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc      5112 Dec 19 00:18 queuedata.json
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc       100 Dec 19 18:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 20:16:14] -rwxr-xr-x 1 boinc boinc      7986 Dec 19 18:19 run_atlas
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc       105 Dec 19 18:19 job.xml
[2025-12-19 20:16:14] -rw-r--r-- 2 boinc boinc 213751241 Dec 19 18:19 EVNT.47898833._000239.pool.root.1
[2025-12-19 20:16:14] -rw-r--r-- 2 boinc boinc    592405 Dec 19 18:19 input.tar.gz
[2025-12-19 20:16:14] -rw-r--r-- 2 boinc boinc     15847 Dec 19 18:19 start_atlas.sh
[2025-12-19 20:16:14] drwxrwx--x 2 boinc boinc      4096 Dec 19 18:19 shared
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc         0 Dec 19 18:19 boinc_setup_complete
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc      6449 Dec 19 18:19 init_data.xml
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc         0 Dec 19 18:19 boinc_lockfile
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc      2552 Dec 19 18:19 pandaJob.out
[2025-12-19 20:16:14] -rw------- 1 boinc boinc    988162 Dec 19 18:19 agis_schedconf.cvmfs.json
[2025-12-19 20:16:14] -rw------- 1 boinc boinc   1516240 Dec 19 18:19 agis_ddmendpoints.agis.ALL.json
[2025-12-19 20:16:14] drwx------ 5 boinc boinc      4096 Dec 19 18:19 pilot3
[2025-12-19 20:16:14] -rw------- 1 boinc boinc 198446149 Dec 19 20:15 HITS.47898836._006128.pool.root.1
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc       530 Dec 19 20:15 boinc_task_state.xml
[2025-12-19 20:16:14] -rw------- 1 boinc boinc        95 Dec 19 20:15 pilot_heartbeat.json
[2025-12-19 20:16:14] -rw------- 1 boinc boinc      1015 Dec 19 20:15 memory_monitor_summary.json
[2025-12-19 20:16:14] -rw------- 1 boinc boinc    294834 Dec 19 20:15 log.47898836._006128.job.log.tgz.1
[2025-12-19 20:16:14] -rw------- 1 boinc boinc      7756 Dec 19 20:15 heartbeat.json
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc      8192 Dec 19 20:15 boinc_mmap_file
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc        27 Dec 19 20:15 wrapper_checkpoint.txt
[2025-12-19 20:16:14] -rw------- 1 boinc boinc       746 Dec 19 20:16 pilotlog.txt
[2025-12-19 20:16:14] -rw------- 1 boinc boinc    998179 Dec 19 20:16 log.47898836._006128.job.log.1
[2025-12-19 20:16:14] -rw------- 1 boinc boinc       357 Dec 19 20:16 output.list
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc       620 Dec 19 20:16 runtime_log
[2025-12-19 20:16:14] -rw------- 1 boinc boinc   1310720 Dec 19 20:16 result.tar.gz
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc      8917 Dec 19 20:16 runtime_log.err
[2025-12-19 20:16:14] -rw------- 1 boinc boinc       663 Dec 19 20:16 2ofNDmDOcq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmz6eKDmNPN9Ho.diag
[2025-12-19 20:16:14] -rw-r--r-- 1 boinc boinc     21514 Dec 19 20:16 stderr.txt
[2025-12-19 20:16:14] HITS file was successfully produced:
[2025-12-19 20:16:14] -rw------- 1 boinc boinc 198446149 Dec 19 20:15 shared/HITS.pool.root.1
[2025-12-19 20:16:14]  *** Contents of shared directory: ***
[2025-12-19 20:16:14] total 404424
[2025-12-19 20:16:14] -rw-r--r-- 2 boinc boinc 213751241 Dec 19 18:19 ATLAS.root_0
[2025-12-19 20:16:14] -rw-r--r-- 2 boinc boinc    592405 Dec 19 18:19 input.tar.gz
[2025-12-19 20:16:14] -rw-r--r-- 2 boinc boinc     15847 Dec 19 18:19 start_atlas.sh
[2025-12-19 20:16:14] -rw------- 1 boinc boinc 198446149 Dec 19 20:15 HITS.pool.root.1
[2025-12-19 20:16:14] -rw------- 1 boinc boinc   1310720 Dec 19 20:16 result.tar.gz
20:16:15 (504177): run_atlas exited; CPU time 20184.529835
20:16:15 (504177): called boinc_finish(0)

</stderr_txt>
]]>

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