Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:18:30 (2743979): wrapper (7.7.26015): starting
21:18:30 (2743979): wrapper: running run_atlas (--nthreads 3)
[2025-12-19 21:18:30] Arguments: --nthreads 3
[2025-12-19 21:18:30] Threads: 3
[2025-12-19 21:18:30] Checking for CVMFS
[2025-12-19 21:18:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 21:18:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 21:18:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 21:18:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 21:18:31] 2.9.2.0 415797 9001 88888 154201 2 56 21181078 36864001 0 130560 0 6002546 99.990 323560 18391 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-19 21:18:31] CVMFS is ok
[2025-12-19 21:18:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-19 21:18:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-19 21:18:31] Further information can be found at the LHC@home message board.
[2025-12-19 21:18:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 21:18:31] Checking for apptainer binary...
[2025-12-19 21:18:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 21:18:31] Running /usr/bin/apptainer --version
[2025-12-19 21:18:31] apptainer version 1.4.1-1.1
[2025-12-19 21:18:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 21:18:31] magicA246a
[2025-12-19 21:18:31] apptainer works
[2025-12-19 21:18:31] Set ATHENA_PROC_NUMBER=3
[2025-12-19 21:18:31] Set ATHENA_CORE_NUMBER=3
[2025-12-19 21:18:31] Starting ATLAS job with PandaID=6934184742
[2025-12-19 21:18:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 22:47:50]  *** The last 200 lines of the pilot log: ***
[2025-12-19 22:47:50] 2025-12-19 21:47:10,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,521 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 22:47:50] 2025-12-19 21:47:10,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 22:47:50] 2025-12-19 21:47:10,521 | INFO     | job 6934184742 has completed (purged errors)
[2025-12-19 22:47:50] 2025-12-19 21:47:10,521 | INFO     | overall cleanup function is called
[2025-12-19 22:47:50] 2025-12-19 21:47:11,526 | INFO     | --- collectZombieJob: --- 10, [2754143]
[2025-12-19 22:47:50] 2025-12-19 21:47:11,526 | INFO     | zombie collector waiting for pid 2754143
[2025-12-19 22:47:50] 2025-12-19 21:47:11,526 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 22:47:50] 2025-12-19 21:47:11,526 | INFO     | collected zombie processes
[2025-12-19 22:47:50] 2025-12-19 21:47:11,526 | INFO     | will attempt to kill all subprocesses of pid=2754143
[2025-12-19 22:47:50] 2025-12-19 21:47:11,584 | INFO     | process IDs to be killed: [2754143] (in reverse order)
[2025-12-19 22:47:50] 2025-12-19 21:47:11,613 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 22:47:50] 2025-12-19 21:47:11,613 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 22:47:50] 2025-12-19 21:47:11,615 | INFO     | did not find any defunct processes belonging to 2754143
[2025-12-19 22:47:50] 2025-12-19 21:47:11,616 | INFO     | did not find any defunct processes belonging to 2754143
[2025-12-19 22:47:50] 2025-12-19 21:47:11,616 | INFO     | ready for new job
[2025-12-19 22:47:50] 2025-12-19 21:47:11,616 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 22:47:50] 2025-12-19 21:47:11,617 | INFO     | ***************************************
[2025-12-19 22:47:50] 2025-12-19 21:47:11,617 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 22:47:50] 2025-12-19 21:47:11,617 | INFO     | ***************************************
[2025-12-19 22:47:50] 2025-12-19 21:47:11,617 | INFO     | 
[2025-12-19 22:47:50] 2025-12-19 21:47:11,617 | INFO     | architecture information:
[2025-12-19 22:47:50] 2025-12-19 21:47:11,618 | INFO     | executing command: cat /etc/os-release
[2025-12-19 22:47:50] 2025-12-19 21:47:11,626 | INFO     | cat /etc/os-release:
[2025-12-19 22:47:50] NAME="CentOS Linux"
[2025-12-19 22:47:50] VERSION="7 (Core)"
[2025-12-19 22:47:50] ID="centos"
[2025-12-19 22:47:50] ID_LIKE="rhel fedora"
[2025-12-19 22:47:50] VERSION_ID="7"
[2025-12-19 22:47:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 22:47:50] ANSI_COLOR="0;31"
[2025-12-19 22:47:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 22:47:50] HOME_URL="https://www.centos.org/"
[2025-12-19 22:47:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 22:47:50] 
[2025-12-19 22:47:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 22:47:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 22:47:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 22:47:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 22:47:50] 
[2025-12-19 22:47:50] 2025-12-19 21:47:11,626 | INFO     | ***************************************
[2025-12-19 22:47:50] 2025-12-19 21:47:12,129 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-19 22:47:50] 2025-12-19 21:47:12,141 | INFO     | sufficient remaining disk space (283720548352 B)
[2025-12-19 22:47:50] 2025-12-19 21:47:12,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 22:47:50] 2025-12-19 21:47:12,141 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 22:47:50] 2025-12-19 21:47:12,141 | INFO     | update_server=False
[2025-12-19 22:47:50] 2025-12-19 21:47:12,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 22:47:50] 2025-12-19 21:47:12,141 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 22:47:50] 2025-12-19 21:47:12,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 22:47:50] 2025-12-19 21:47:12,264 | INFO     | all data control threads have been joined
[2025-12-19 22:47:50] 2025-12-19 21:47:12,328 | INFO     | all job control threads have been joined
[2025-12-19 22:47:50] 2025-12-19 21:47:12,399 | INFO     | all payload control threads have been joined
[2025-12-19 22:47:50] 2025-12-19 21:47:12,626 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-19 22:47:50] 2025-12-19 21:47:12,626 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-19 22:47:50] 2025-12-19 21:47:12,626 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 22:47:50] 2025-12-19 21:47:12,626 | INFO     | will abort loop
[2025-12-19 22:47:50] 2025-12-19 21:47:13,145 | INFO     | [job] retrieve thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:13,146 | INFO     | [job] queue monitor thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:13,269 | INFO     | [data] control thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:13,334 | INFO     | [job] control thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:13,404 | INFO     | [payload] control thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:13,457 | INFO     | [payload] failed_post thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:13,576 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:13,631 | INFO     | [job] job monitor thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:13,943 | INFO     | [data] copytool_in thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:14,144 | INFO     | [data] copytool_out thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:14,144 | INFO     | [job] validate thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:14,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 22:47:50] 2025-12-19 21:47:14,306 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:14,351 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:14,402 | INFO     | [payload] validate_post thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:18,228 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:22,924 | INFO     | job.realtimelogging is not enabled
[2025-12-19 22:47:50] 2025-12-19 21:47:23,929 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 22:47:50] 2025-12-19 21:47:42,617 | INFO     | PID=2747705 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-19 22:47:50] 2025-12-19 21:47:42,617 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 22:47:50] 2025-12-19 21:47:42,617 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 22:47:50] 2025-12-19 21:47:42,617 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 22:47:50] 2025-12-19 21:47:43,830 | INFO     | [monitor] cgroup control has ended
[2025-12-19 22:47:50] 2025-12-19 21:47:45,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140383322462016)>', '<ExcThread(monitor, started 140382616680192)>']
[2025-12-19 22:47:50] 2025-12-19 21:47:45,632 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 22:47:50] 2025-12-19 21:47:45,633 | INFO     | [monitor] control thread has ended
[2025-12-19 22:47:50] 2025-12-19 21:47:50,402 | INFO     | all workflow threads have been joined
[2025-12-19 22:47:50] 2025-12-19 21:47:50,403 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 22:47:50] 2025-12-19 21:47:50,403 | INFO     | traces error code: 0
[2025-12-19 22:47:50] 2025-12-19 21:47:50,403 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 22:47:50] 2025-12-19 21:47:50,458 [wrapper] ==== pilot stdout END ====
[2025-12-19 22:47:50] 2025-12-19 21:47:50,460 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 22:47:50] 2025-12-19 21:47:50,462 [wrapper] pilotpid: 2747705
[2025-12-19 22:47:50] 2025-12-19 21:47:50,465 [wrapper] Pilot exit status: 0
[2025-12-19 22:47:50] 2025-12-19 21:47:50,472 [wrapper] pandaids: 6934184742
[2025-12-19 22:47:50] 2025-12-19 21:47:50,491 [wrapper] cleanup supervisor_pilot 2766708 2747706
[2025-12-19 22:47:50] 2025-12-19 21:47:50,494 [wrapper] Test setup, not cleaning
[2025-12-19 22:47:50] 2025-12-19 21:47:50,496 [wrapper] apfmon messages muted
[2025-12-19 22:47:50] 2025-12-19 21:47:50,499 [wrapper] ==== wrapper stdout END ====
[2025-12-19 22:47:50] 2025-12-19 21:47:50,501 [wrapper] ==== wrapper stderr END ====
[2025-12-19 22:47:50]  *** Error codes and diagnostics ***
[2025-12-19 22:47:50]     "exeErrorCode": 0,
[2025-12-19 22:47:50]     "exeErrorDiag": "",
[2025-12-19 22:47:50]     "pilotErrorCode": 0,
[2025-12-19 22:47:50]     "pilotErrorDiag": "",
[2025-12-19 22:47:50]  *** Listing of results directory ***
[2025-12-19 22:47:50] total 339004
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc    579449 Dec 18 16:49 pilot3.tar.gz
[2025-12-19 22:47:50] -rwx------ 1 boinc boinc     36322 Dec 18 16:50 runpilot2-wrapper.sh
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc      5112 Dec 18 16:51 queuedata.json
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc       100 Dec 19 21:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 22:47:50] -rwxr-xr-x 1 boinc boinc      7986 Dec 19 21:18 run_atlas
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc       105 Dec 19 21:18 job.xml
[2025-12-19 22:47:50] -rw-r--r-- 2 boinc boinc 191853945 Dec 19 21:18 EVNT.47886829._000701.pool.root.1
[2025-12-19 22:47:50] -rw-r--r-- 2 boinc boinc    592418 Dec 19 21:18 input.tar.gz
[2025-12-19 22:47:50] -rw-r--r-- 2 boinc boinc     15847 Dec 19 21:18 start_atlas.sh
[2025-12-19 22:47:50] drwxrwx--x 2 boinc boinc      4096 Dec 19 21:18 shared
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc         0 Dec 19 21:18 boinc_setup_complete
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc      6447 Dec 19 21:18 init_data.xml
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc         0 Dec 19 21:18 boinc_lockfile
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc      2539 Dec 19 21:18 pandaJob.out
[2025-12-19 22:47:50] -rw------- 1 boinc boinc    988154 Dec 19 21:18 agis_schedconf.cvmfs.json
[2025-12-19 22:47:50] -rw------- 1 boinc boinc   1516240 Dec 19 21:18 agis_ddmendpoints.agis.ALL.json
[2025-12-19 22:47:50] drwx------ 5 boinc boinc      4096 Dec 19 21:18 pilot3
[2025-12-19 22:47:50] -rw------- 1 boinc boinc 149287741 Dec 19 22:46 HITS.47886831._018262.pool.root.1
[2025-12-19 22:47:50] -rw------- 1 boinc boinc      1026 Dec 19 22:46 memory_monitor_summary.json
[2025-12-19 22:47:50] -rw------- 1 boinc boinc    270366 Dec 19 22:47 log.47886831._018262.job.log.tgz.1
[2025-12-19 22:47:50] -rw------- 1 boinc boinc        95 Dec 19 22:47 pilot_heartbeat.json
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc       529 Dec 19 22:47 boinc_task_state.xml
[2025-12-19 22:47:50] -rw------- 1 boinc boinc      7768 Dec 19 22:47 heartbeat.json
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc        27 Dec 19 22:47 wrapper_checkpoint.txt
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc      8192 Dec 19 22:47 boinc_mmap_file
[2025-12-19 22:47:50] -rw------- 1 boinc boinc      5010 Dec 19 22:47 pilotlog.txt
[2025-12-19 22:47:50] -rw------- 1 boinc boinc    777063 Dec 19 22:47 log.47886831._018262.job.log.1
[2025-12-19 22:47:50] -rw------- 1 boinc boinc       357 Dec 19 22:47 output.list
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc       620 Dec 19 22:47 runtime_log
[2025-12-19 22:47:50] -rw------- 1 boinc boinc   1064960 Dec 19 22:47 result.tar.gz
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc      8917 Dec 19 22:47 runtime_log.err
[2025-12-19 22:47:50] -rw------- 1 boinc boinc       663 Dec 19 22:47 q0pLDmqRVq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxaZKDmPKbayn.diag
[2025-12-19 22:47:50] -rw-r--r-- 1 boinc boinc     12262 Dec 19 22:47 stderr.txt
[2025-12-19 22:47:50] HITS file was successfully produced:
[2025-12-19 22:47:50] -rw------- 1 boinc boinc 149287741 Dec 19 22:46 shared/HITS.pool.root.1
[2025-12-19 22:47:50]  *** Contents of shared directory: ***
[2025-12-19 22:47:50] total 334796
[2025-12-19 22:47:50] -rw-r--r-- 2 boinc boinc 191853945 Dec 19 21:18 ATLAS.root_0
[2025-12-19 22:47:50] -rw-r--r-- 2 boinc boinc    592418 Dec 19 21:18 input.tar.gz
[2025-12-19 22:47:50] -rw-r--r-- 2 boinc boinc     15847 Dec 19 21:18 start_atlas.sh
[2025-12-19 22:47:50] -rw------- 1 boinc boinc 149287741 Dec 19 22:46 HITS.pool.root.1
[2025-12-19 22:47:50] -rw------- 1 boinc boinc   1064960 Dec 19 22:47 result.tar.gz
22:48:12 (2743979): run_atlas exited; CPU time 15346.663711
22:48:12 (2743979): called boinc_finish(0)

</stderr_txt>
]]>

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