Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:28:04 (3188822): wrapper (7.7.26015): starting
18:28:04 (3188822): wrapper: running run_atlas (--nthreads 4)
[2025-12-19 18:28:05] Arguments: --nthreads 4
[2025-12-19 18:28:05] Threads: 4
[2025-12-19 18:28:05] Checking for CVMFS
[2025-12-19 18:28:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 18:28:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 18:28:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 18:28:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 18:28:05] 2.9.2.0 639704 9213 107400 154197 1 81 20233395 36864001 0 130560 0 6298278 99.990 335675 18203 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-19 18:28:05] CVMFS is ok
[2025-12-19 18:28:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-19 18:28:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-19 18:28:05] Further information can be found at the LHC@home message board.
[2025-12-19 18:28:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 18:28:05] Checking for apptainer binary...
[2025-12-19 18:28:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 18:28:05] Running /usr/bin/apptainer --version
[2025-12-19 18:28:05] apptainer version 1.4.1-1.1
[2025-12-19 18:28:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 18:28:05] thA309
[2025-12-19 18:28:05] apptainer works
[2025-12-19 18:28:05] Set ATHENA_PROC_NUMBER=4
[2025-12-19 18:28:05] Set ATHENA_CORE_NUMBER=4
[2025-12-19 18:28:05] Starting ATLAS job with PandaID=6933845322
[2025-12-19 18:28:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 20:09:27]  *** The last 200 lines of the pilot log: ***
[2025-12-19 20:09:27] 2025-12-19 19:08:21,268 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-19 20:09:27] 2025-12-19 19:08:21,269 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-19 20:09:27] 2025-12-19 19:08:21,269 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 20:09:27] 2025-12-19 19:08:21,269 | INFO     | will abort loop
[2025-12-19 20:09:27] 2025-12-19 19:08:21,298 | INFO     | all payload control threads have been joined
[2025-12-19 20:09:27] 2025-12-19 19:08:21,365 | INFO     | all job control threads have been joined
[2025-12-19 20:09:27] 2025-12-19 19:08:21,465 | INFO     | all data control threads have been joined
[2025-12-19 20:09:27] 2025-12-19 19:08:21,963 | INFO     | [job] queue monitor thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:21,964 | INFO     | [job] retrieve thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,274 | INFO     | [job] job monitor thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,304 | INFO     | [payload] control thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,371 | INFO     | [job] control thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,386 | INFO     | [job] validate thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,463 | INFO     | [payload] validate_post thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,470 | INFO     | [data] control thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,522 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,566 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,921 | INFO     | [payload] failed_post thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:22,964 | INFO     | [data] copytool_out thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:23,103 | INFO     | [data] copytool_in thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:23,325 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:24,220 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 20:09:27] 2025-12-19 19:08:28,228 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:31,688 | INFO     | job.realtimelogging is not enabled
[2025-12-19 20:09:27] 2025-12-19 19:08:32,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 20:09:27] 2025-12-19 19:08:52,051 | INFO     | PID=3192631 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-19 20:09:27] 2025-12-19 19:08:52,052 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 20:09:27] 2025-12-19 19:08:52,052 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 20:09:27] 2025-12-19 19:08:52,052 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 20:09:27] 2025-12-19 19:09:20,928 | INFO     | [monitor] cgroup control has ended
[2025-12-19 20:09:27] 2025-12-19 19:09:22,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530263013184)>', '<ExcThread(monitor, started 140529618630400)>']
[2025-12-19 20:09:27] 2025-12-19 19:09:23,215 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 20:09:27] 2025-12-19 19:09:23,215 | INFO     | [monitor] control thread has ended
[2025-12-19 20:09:27] 2025-12-19 19:09:27,472 | INFO     | all workflow threads have been joined
[2025-12-19 20:09:27] 2025-12-19 19:09:27,473 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 20:09:27] 2025-12-19 19:09:27,473 | INFO     | traces error code: 0
[2025-12-19 20:09:27] 2025-12-19 19:09:27,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 20:09:27] 2025-12-19 19:09:27,557 [wrapper] ==== pilot stdout END ====
[2025-12-19 20:09:27] 2025-12-19 19:09:27,562 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 20:09:27] 2025-12-19 19:09:27,565 [wrapper] pilotpid: 3192631
[2025-12-19 20:09:27] 2025-12-19 19:09:27,569 [wrapper] Pilot exit status: 0
[2025-12-19 20:09:27] 2025-12-19 19:09:27,581 [wrapper] pandaids: 6933845322
[2025-12-19 20:09:27] 2025-12-19 19:09:27,607 [wrapper] cleanup supervisor_pilot 3215021 3192632
[2025-12-19 20:09:27] 2025-12-19 19:09:27,611 [wrapper] Test setup, not cleaning
[2025-12-19 20:09:27] 2025-12-19 19:09:27,615 [wrapper] apfmon messages muted
[2025-12-19 20:09:27] 2025-12-19 19:09:27,619 [wrapper] ==== wrapper stdout END ====
[2025-12-19 20:09:27] 2025-12-19 19:09:27,623 [wrapper] ==== wrapper stderr END ====
[2025-12-19 20:09:27]  *** Error codes and diagnostics ***
[2025-12-19 20:09:27]     "exeErrorCode": 0,
[2025-12-19 20:09:27]     "exeErrorDiag": "",
[2025-12-19 20:09:27]     "pilotErrorCode": 0,
[2025-12-19 20:09:27]     "pilotErrorDiag": "",
[2025-12-19 20:09:27]  *** Listing of results directory ***
[2025-12-19 20:09:27] total 415604
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc    579449 Dec 18 14:26 pilot3.tar.gz
[2025-12-19 20:09:27] -rwx------ 1 boinc boinc     36322 Dec 18 14:29 runpilot2-wrapper.sh
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc      5112 Dec 18 14:31 queuedata.json
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc       100 Dec 19 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 20:09:27] -rwxr-xr-x 1 boinc boinc      7986 Dec 19 18:28 run_atlas
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc       105 Dec 19 18:28 job.xml
[2025-12-19 20:09:27] -rw-r--r-- 2 boinc boinc 216312882 Dec 19 18:28 EVNT.47898833._000204.pool.root.1
[2025-12-19 20:09:27] -rw-r--r-- 2 boinc boinc    592396 Dec 19 18:28 input.tar.gz
[2025-12-19 20:09:27] -rw-r--r-- 2 boinc boinc     15847 Dec 19 18:28 start_atlas.sh
[2025-12-19 20:09:27] drwxrwx--x 2 boinc boinc      4096 Dec 19 18:28 shared
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc         0 Dec 19 18:28 boinc_setup_complete
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc      6377 Dec 19 18:28 init_data.xml
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc         0 Dec 19 18:28 boinc_lockfile
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc      2552 Dec 19 18:28 pandaJob.out
[2025-12-19 20:09:27] -rw------- 1 boinc boinc    988162 Dec 19 18:28 agis_schedconf.cvmfs.json
[2025-12-19 20:09:27] -rw------- 1 boinc boinc   1516240 Dec 19 18:28 agis_ddmendpoints.agis.ALL.json
[2025-12-19 20:09:27] drwx------ 5 boinc boinc      4096 Dec 19 18:28 pilot3
[2025-12-19 20:09:27] -rw------- 1 boinc boinc 203069011 Dec 19 20:07 HITS.47898836._005237.pool.root.1
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc       529 Dec 19 20:08 boinc_task_state.xml
[2025-12-19 20:09:27] -rw------- 1 boinc boinc      1026 Dec 19 20:08 memory_monitor_summary.json
[2025-12-19 20:09:27] -rw------- 1 boinc boinc    281176 Dec 19 20:08 log.47898836._005237.job.log.tgz.1
[2025-12-19 20:09:27] -rw------- 1 boinc boinc      7770 Dec 19 20:08 heartbeat.json
[2025-12-19 20:09:27] -rw------- 1 boinc boinc        95 Dec 19 20:08 pilot_heartbeat.json
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc        27 Dec 19 20:09 wrapper_checkpoint.txt
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc      8192 Dec 19 20:09 boinc_mmap_file
[2025-12-19 20:09:27] -rw------- 1 boinc boinc      5010 Dec 19 20:09 pilotlog.txt
[2025-12-19 20:09:27] -rw------- 1 boinc boinc    871851 Dec 19 20:09 log.47898836._005237.job.log.1
[2025-12-19 20:09:27] -rw------- 1 boinc boinc       357 Dec 19 20:09 output.list
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc       620 Dec 19 20:09 runtime_log
[2025-12-19 20:09:27] -rw------- 1 boinc boinc   1167360 Dec 19 20:09 result.tar.gz
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc      8897 Dec 19 20:09 runtime_log.err
[2025-12-19 20:09:27] -rw------- 1 boinc boinc       659 Dec 19 20:09 3JGKDmnFTq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5AeKDmCPz5Em.diag
[2025-12-19 20:09:27] -rw-r--r-- 1 boinc boinc      7262 Dec 19 20:09 stderr.txt
[2025-12-19 20:09:27] HITS file was successfully produced:
[2025-12-19 20:09:27] -rw------- 1 boinc boinc 203069011 Dec 19 20:07 shared/HITS.pool.root.1
[2025-12-19 20:09:27]  *** Contents of shared directory: ***
[2025-12-19 20:09:27] total 411300
[2025-12-19 20:09:27] -rw-r--r-- 2 boinc boinc 216312882 Dec 19 18:28 ATLAS.root_0
[2025-12-19 20:09:27] -rw-r--r-- 2 boinc boinc    592396 Dec 19 18:28 input.tar.gz
[2025-12-19 20:09:27] -rw-r--r-- 2 boinc boinc     15847 Dec 19 18:28 start_atlas.sh
[2025-12-19 20:09:27] -rw------- 1 boinc boinc 203069011 Dec 19 20:07 HITS.pool.root.1
[2025-12-19 20:09:27] -rw------- 1 boinc boinc   1167360 Dec 19 20:09 result.tar.gz
20:09:29 (3188822): run_atlas exited; CPU time 22851.174555
20:09:29 (3188822): called boinc_finish(0)

</stderr_txt>
]]>

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