Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:47:40 (681184): wrapper (7.7.26015): starting
11:47:40 (681184): wrapper: running run_atlas (--nthreads 4)
[2025-12-19 11:47:40] Arguments: --nthreads 4
[2025-12-19 11:47:40] Threads: 4
[2025-12-19 11:47:40] Checking for CVMFS
[2025-12-19 11:47:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 11:47:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 11:47:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 11:47:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 11:47:40] 2.9.2.0 3086 2216 92804 154185 0 57 33536671 36864001 0 130560 0 1766007 99.991 85242 15861 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-19 11:47:40] CVMFS is ok
[2025-12-19 11:47:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-19 11:47:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-19 11:47:40] Further information can be found at the LHC@home message board.
[2025-12-19 11:47:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 11:47:40] Checking for apptainer binary...
[2025-12-19 11:47:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 11:47:40] Running /usr/bin/apptainer --version
[2025-12-19 11:47:40] apptainer version 1.4.1-1.1
[2025-12-19 11:47:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 11:47:41] cosA131b
[2025-12-19 11:47:41] apptainer works
[2025-12-19 11:47:41] Set ATHENA_PROC_NUMBER=4
[2025-12-19 11:47:41] Set ATHENA_CORE_NUMBER=4
[2025-12-19 11:47:41] Starting ATLAS job with PandaID=6934214606
[2025-12-19 11:47:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 13:05:00]  *** The last 200 lines of the pilot log: ***
[2025-12-19 13:05:00] 2025-12-19 12:04:10,599 | INFO     | summary of transferred files:
[2025-12-19 13:05:00] 2025-12-19 12:04:10,599 | INFO     |  -- lfn=log.47886933._016352.job.log.tgz.1, status_code=0, status=transferred
[2025-12-19 13:05:00] 2025-12-19 12:04:10,599 | INFO     | stage-out finished correctly
[2025-12-19 13:05:00] 2025-12-19 12:04:10,723 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-19 13:05:00] 2025-12-19 12:04:11,628 | INFO     | time since job start (4582s) is within the limit (174528.0s)
[2025-12-19 13:05:00] 2025-12-19 12:04:13,635 | INFO     | time since job start (4584s) is within the limit (174528.0s)
[2025-12-19 13:05:00] 2025-12-19 12:04:13,635 | INFO     | 4585s have passed since pilot start - server update state is 'RUNNING'
[2025-12-19 13:05:00] 2025-12-19 12:04:13,645 | INFO     | job 6934214606 has state=finished
[2025-12-19 13:05:00] 2025-12-19 12:04:13,645 | INFO     | preparing for final server update for job 6934214606 in state='finished'
[2025-12-19 13:05:00] 2025-12-19 12:04:13,645 | INFO     | this job has now completed (state=finished)
[2025-12-19 13:05:00] 2025-12-19 12:04:13,645 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-19 13:05:00] 2025-12-19 12:04:13,645 | INFO     | log transfer has been attempted: DONE
[2025-12-19 13:05:00] 2025-12-19 12:04:13,646 | INFO     | job 6934214606 has finished - writing final server update
[2025-12-19 13:05:00] 2025-12-19 12:04:13,646 | INFO     | total number of processed events: 400 (read)
[2025-12-19 13:05:00] 2025-12-19 12:04:13,646 | INFO     | executing command: lscpu
[2025-12-19 13:05:00] 2025-12-19 12:04:13,668 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-19 13:05:00] 2025-12-19 12:04:13,843 | WARNING  | process 691572 can no longer be monitored (due to stat problems) - aborting
[2025-12-19 13:05:00] 2025-12-19 12:04:13,844 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6934214606/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 13:05:00] 2025-12-19 12:04:13,844 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6934214606/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 13:05:00] 2025-12-19 12:04:13,844 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-19 13:05:00] 2025-12-19 12:04:13,844 | WARNING  | maxPSS not found in memory monitor output
[2025-12-19 13:05:00] 2025-12-19 12:04:13,844 | INFO     | reaping zombies for max 20 seconds
[2025-12-19 13:05:00] 2025-12-19 12:04:13,852 | INFO     | checking for looping job (in state=finished)
[2025-12-19 13:05:00] 2025-12-19 12:04:13,852 | INFO     | using looping job limit: 7200 s
[2025-12-19 13:05:00] 2025-12-19 12:04:13,853 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2279860 B
[2025-12-19 13:05:00] 2025-12-19 12:04:13,853 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16329 B
[2025-12-19 13:05:00] 2025-12-19 12:04:13,853 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-19 13:05:00] 2025-12-19 12:04:15,641 | INFO     | time since job start (4586s) is within the limit (174528.0s)
[2025-12-19 13:05:00] 2025-12-19 12:04:17,646 | INFO     | time since job start (4588s) is within the limit (174528.0s)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,301 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-19 13:05:00] 2025-12-19 12:04:18,306 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3651.3055
[2025-12-19 13:05:00] 2025-12-19 12:04:18,308 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6934214606/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,309 | INFO     | extracted standard info from prmon json
[2025-12-19 13:05:00] 2025-12-19 12:04:18,309 | INFO     | extracted standard memory fields from prmon json
[2025-12-19 13:05:00] 2025-12-19 12:04:18,309 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-19 13:05:00] 2025-12-19 12:04:18,309 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-19 13:05:00] 2025-12-19 12:04:18,310 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-19 13:05:00] 2025-12-19 12:04:18,311 | INFO     | fitting pss+swap vs Time
[2025-12-19 13:05:00] 2025-12-19 12:04:18,311 | INFO     | sum of square deviations: 97479037.0
[2025-12-19 13:05:00] 2025-12-19 12:04:18,311 | INFO     | sum of deviations: -7039036348.5
[2025-12-19 13:05:00] 2025-12-19 12:04:18,311 | INFO     | mean x: 1766143640.5
[2025-12-19 13:05:00] 2025-12-19 12:04:18,311 | INFO     | mean y: 2459723.867647059
[2025-12-19 13:05:00] 2025-12-19 12:04:18,311 | INFO     | intersect: 127537052439.95712
[2025-12-19 13:05:00] 2025-12-19 12:04:18,311 | INFO     | chi2: 0.09892853999754894
[2025-12-19 13:05:00] 2025-12-19 12:04:18,311 | INFO     | current memory leak: -72.21 B/s (using 68 data points, chi2=0.10)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | could have reported an average CPU frequency of 3655 MHz (6 samples)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | ..............................
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | . Timing measurements:
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | . get job = 0 s
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | . initial setup = 1 s
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | . payload setup = 4 s
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | . stage-in = 0 s
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | . payload execution = 4559 s
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | . stage-out = 0 s
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | . log creation = 0 s
[2025-12-19 13:05:00] 2025-12-19 12:04:18,312 | INFO     | ..............................
[2025-12-19 13:05:00] 2025-12-19 12:04:18,341 | INFO     | sufficient remaining disk space (321667465216 B)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,353 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,353 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6934214606: 2576475 B (within 2768240640 B limit)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,354 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6934214606/HITS.47886933._016352.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,354 | INFO     | total size of present files: 0 B (workdir size: 2576475 B)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,354 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6934214606/HITS.47886933._016352.pool.root.1 since it does not exist
[2025-12-19 13:05:00] 2025-12-19 12:04:18,394 | INFO     | number of running child processes to parent process 691572: 1
[2025-12-19 13:05:00] 2025-12-19 12:04:18,394 | INFO     | maximum number of monitored processes: 6
[2025-12-19 13:05:00] 2025-12-19 12:04:18,394 | INFO     | aborting job monitoring since job object (job id=6934214606) has expired
[2025-12-19 13:05:00] 2025-12-19 12:04:18,420 | INFO     | 
[2025-12-19 13:05:00] 2025-12-19 12:04:18,420 | INFO     | job summary report
[2025-12-19 13:05:00] 2025-12-19 12:04:18,420 | INFO     | --------------------------------------------------
[2025-12-19 13:05:00] 2025-12-19 12:04:18,420 | INFO     | PanDA job id: 6934214606
[2025-12-19 13:05:00] 2025-12-19 12:04:18,420 | INFO     | task id: 47886933
[2025-12-19 13:05:00] 2025-12-19 12:04:18,420 | INFO     | errors: (none)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,420 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | pilot state: finished 
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | transexitcode: 0
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | exeerrorcode: 0
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | exeerrordiag: 
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | exitcode: 0
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | exitmsg: OK
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | cpuconsumptiontime: 17155 s
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | nevents: 400
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | neventsw: 0
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | pid: 691572
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | pgrp: 691572
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | corecount: 4
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | event service: False
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | sizes: {0: 2283973, 4: 2284235, 11: 2284263, 4567: 2319532, 4568: 2319532, 4575: 2319726}
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | --------------------------------------------------
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | 
[2025-12-19 13:05:00] 2025-12-19 12:04:18,421 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-19 13:05:00] 2025-12-19 12:04:18,440 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,440 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | job 6934214606 has completed (purged errors)
[2025-12-19 13:05:00] 2025-12-19 12:04:18,441 | INFO     | overall cleanup function is called
[2025-12-19 13:05:00] 2025-12-19 12:04:19,446 | INFO     | --- collectZombieJob: --- 10, [691572]
[2025-12-19 13:05:00] 2025-12-19 12:04:19,446 | INFO     | zombie collector waiting for pid 691572
[2025-12-19 13:05:00] 2025-12-19 12:04:19,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 13:05:00] 2025-12-19 12:04:19,446 | INFO     | collected zombie processes
[2025-12-19 13:05:00] 2025-12-19 12:04:19,447 | INFO     | will attempt to kill all subprocesses of pid=691572
[2025-12-19 13:05:00] 2025-12-19 12:04:19,490 | INFO     | process IDs to be killed: [691572] (in reverse order)
[2025-12-19 13:05:00] 2025-12-19 12:04:19,523 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 13:05:00] 2025-12-19 12:04:19,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 13:05:00] 2025-12-19 12:04:19,525 | INFO     | did not find any defunct processes belonging to 691572
[2025-12-19 13:05:00] 2025-12-19 12:04:19,526 | INFO     | did not find any defunct processes belonging to 691572
[2025-12-19 13:05:00] 2025-12-19 12:04:19,526 | INFO     | ready for new job
[2025-12-19 13:05:00] 2025-12-19 12:04:19,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 13:05:00] 2025-12-19 12:04:19,527 | INFO     | ***************************************
[2025-12-19 13:05:00] 2025-12-19 12:04:19,527 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 13:05:00] 2025-12-19 12:04:19,527 | INFO     | ***************************************
[2025-12-19 13:05:00] 2025-12-19 12:04:19,527 | INFO     | 
[2025-12-19 13:05:00] 2025-12-19 12:04:19,528 | INFO     | architecture information:
[2025-12-19 13:05:00] 2025-12-19 12:04:19,528 | INFO     | executing command: cat /etc/os-release
[2025-12-19 13:05:00] 2025-12-19 12:04:19,541 | INFO     | cat /etc/os-release:
[2025-12-19 13:05:00] NAME="CentOS Linux"
[2025-12-19 13:05:00] VERSION="7 (Core)"
[2025-12-19 13:05:00] ID="centos"
[2025-12-19 13:05:00] ID_LIKE="rhel fedora"
[2025-12-19 13:05:00] VERSION_ID="7"
[2025-12-19 13:05:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 13:05:00] ANSI_COLOR="0;31"
[2025-12-19 13:05:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 13:05:00] HOME_URL="https://www.centos.org/"
[2025-12-19 13:05:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 13:05:00] 
[2025-12-19 13:05:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 13:05:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 13:05:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 13:05:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 13:05:00] 
[2025-12-19 13:05:00] 2025-12-19 12:04:19,542 | INFO     | ***************************************
[2025-12-19 13:05:00] 2025-12-19 12:04:20,045 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-19 13:05:00] 2025-12-19 12:04:20,063 | INFO     | sufficient remaining disk space (321670610944 B)
[2025-12-19 13:05:00] 2025-12-19 12:04:20,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 13:05:00] 2025-12-19 12:04:20,064 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 13:05:00] 2025-12-19 12:04:20,064 | INFO     | update_server=False
[2025-12-19 13:05:00] 2025-12-19 12:04:20,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 13:05:00] 2025-12-19 12:04:20,064 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 13:05:00] 2025-12-19 12:04:20,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 13:05:00] 2025-12-19 12:04:20,064 | INFO     | aborting loop
[2025-12-19 13:05:00] 2025-12-19 12:04:20,987 | INFO     | all data control threads have been joined
[2025-12-19 13:05:00] 2025-12-19 12:04:20,987 | INFO     | all payload control threads have been joined
[2025-12-19 13:05:00] 2025-12-19 12:04:21,069 | INFO     | [job] retrieve thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:21,070 | INFO     | [job] queue monitor thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:21,070 | INFO     | [job] job monitor thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:21,132 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:21,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 13:05:00] 2025-12-19 12:04:21,274 | INFO     | [payload] failed_post thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:21,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 13:05:00] 2025-12-19 12:04:21,513 | INFO     | all job control threads have been joined
[2025-12-19 13:05:00] 2025-12-19 12:04:21,578 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:21,688 | INFO     | [data] copytool_in thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:21,993 | INFO     | [data] control thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:21,993 | INFO     | [payload] control thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:22,312 | INFO     | [payload] validate_post thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:22,405 | INFO     | [job] validate thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:22,519 | INFO     | [job] control thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:22,563 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:23,160 | INFO     | [data] copytool_out thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:25,281 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:30,118 | INFO     | job.realtimelogging is not enabled
[2025-12-19 13:05:00] 2025-12-19 12:04:31,124 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 13:05:00] 2025-12-19 12:04:50,775 | INFO     | PID=684975 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-19 13:05:00] 2025-12-19 12:04:50,775 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 13:05:00] 2025-12-19 12:04:50,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 13:05:00] 2025-12-19 12:04:50,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 13:05:00] 2025-12-19 12:04:54,557 | INFO     | [monitor] cgroup control has ended
[2025-12-19 13:05:00] 2025-12-19 12:04:55,563 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512346453824)>', '<ExcThread(monitor, started 140511113369344)>']
[2025-12-19 13:05:00] 2025-12-19 12:04:55,802 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 13:05:00] 2025-12-19 12:04:55,803 | INFO     | [monitor] control thread has ended
[2025-12-19 13:05:00] 2025-12-19 12:05:00,588 | INFO     | all workflow threads have been joined
[2025-12-19 13:05:00] 2025-12-19 12:05:00,588 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 13:05:00] 2025-12-19 12:05:00,589 | INFO     | traces error code: 0
[2025-12-19 13:05:00] 2025-12-19 12:05:00,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 13:05:00] 2025-12-19 12:05:00,665 [wrapper] ==== pilot stdout END ====
[2025-12-19 13:05:00] 2025-12-19 12:05:00,670 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 13:05:00] 2025-12-19 12:05:00,674 [wrapper] pilotpid: 684975
[2025-12-19 13:05:00] 2025-12-19 12:05:00,678 [wrapper] Pilot exit status: 0
[2025-12-19 13:05:00] 2025-12-19 12:05:00,690 [wrapper] pandaids: 6934214606
[2025-12-19 13:05:00] 2025-12-19 12:05:00,713 [wrapper] cleanup supervisor_pilot  703659 684976
[2025-12-19 13:05:00] 2025-12-19 12:05:00,716 [wrapper] Test setup, not cleaning
[2025-12-19 13:05:00] 2025-12-19 12:05:00,720 [wrapper] apfmon messages muted
[2025-12-19 13:05:00] 2025-12-19 12:05:00,724 [wrapper] ==== wrapper stdout END ====
[2025-12-19 13:05:00] 2025-12-19 12:05:00,728 [wrapper] ==== wrapper stderr END ====
[2025-12-19 13:05:00]  *** Error codes and diagnostics ***
[2025-12-19 13:05:00]     "exeErrorCode": 0,
[2025-12-19 13:05:00]     "exeErrorDiag": "",
[2025-12-19 13:05:00]     "pilotErrorCode": 0,
[2025-12-19 13:05:00]     "pilotErrorDiag": "",
[2025-12-19 13:05:00]  *** Listing of results directory ***
[2025-12-19 13:05:00] total 338184
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc    579449 Dec 18 19:20 pilot3.tar.gz
[2025-12-19 13:05:00] -rwx------ 1 boinc boinc     36322 Dec 18 19:22 runpilot2-wrapper.sh
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc      5112 Dec 18 19:25 queuedata.json
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc       100 Dec 19 11:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 13:05:00] -rwxr-xr-x 1 boinc boinc      7986 Dec 19 11:47 run_atlas
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc       105 Dec 19 11:47 job.xml
[2025-12-19 13:05:00] -rw-r--r-- 2 boinc boinc 190107304 Dec 19 11:47 EVNT.47886929._000674.pool.root.1
[2025-12-19 13:05:00] -rw-r--r-- 2 boinc boinc    592401 Dec 19 11:47 input.tar.gz
[2025-12-19 13:05:00] -rw-r--r-- 2 boinc boinc     15847 Dec 19 11:47 start_atlas.sh
[2025-12-19 13:05:00] drwxrwx--x 2 boinc boinc      4096 Dec 19 11:47 shared
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc         0 Dec 19 11:47 boinc_setup_complete
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc      6378 Dec 19 11:47 init_data.xml
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc         0 Dec 19 11:47 boinc_lockfile
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc      2516 Dec 19 11:47 pandaJob.out
[2025-12-19 13:05:00] -rw------- 1 boinc boinc    988887 Dec 19 11:47 agis_schedconf.cvmfs.json
[2025-12-19 13:05:00] -rw------- 1 boinc boinc   1516240 Dec 19 11:47 agis_ddmendpoints.agis.ALL.json
[2025-12-19 13:05:00] drwx------ 5 boinc boinc      4096 Dec 19 11:47 pilot3
[2025-12-19 13:05:00] -rw------- 1 boinc boinc 150407887 Dec 19 13:03 HITS.47886933._016352.pool.root.1
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc       529 Dec 19 13:04 boinc_task_state.xml
[2025-12-19 13:05:00] -rw------- 1 boinc boinc      1023 Dec 19 13:04 memory_monitor_summary.json
[2025-12-19 13:05:00] -rw------- 1 boinc boinc    260364 Dec 19 13:04 log.47886933._016352.job.log.tgz.1
[2025-12-19 13:05:00] -rw------- 1 boinc boinc        95 Dec 19 13:04 pilot_heartbeat.json
[2025-12-19 13:05:00] -rw------- 1 boinc boinc      7768 Dec 19 13:04 heartbeat.json
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc      8192 Dec 19 13:04 boinc_mmap_file
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc        27 Dec 19 13:04 wrapper_checkpoint.txt
[2025-12-19 13:05:00] -rw------- 1 boinc boinc      4823 Dec 19 13:05 pilotlog.txt
[2025-12-19 13:05:00] -rw------- 1 boinc boinc    677369 Dec 19 13:05 log.47886933._016352.job.log.1
[2025-12-19 13:05:00] -rw------- 1 boinc boinc       357 Dec 19 13:05 output.list
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc       620 Dec 19 13:05 runtime_log
[2025-12-19 13:05:00] -rw------- 1 boinc boinc    952320 Dec 19 13:05 result.tar.gz
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc      8907 Dec 19 13:05 runtime_log.err
[2025-12-19 13:05:00] -rw------- 1 boinc boinc       660 Dec 19 13:05 RlVKDmNpXq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRaeKDm1l4iOo.diag
[2025-12-19 13:05:00] -rw-r--r-- 1 boinc boinc     22328 Dec 19 13:05 stderr.txt
[2025-12-19 13:05:00] HITS file was successfully produced:
[2025-12-19 13:05:00] -rw------- 1 boinc boinc 150407887 Dec 19 13:03 shared/HITS.pool.root.1
[2025-12-19 13:05:00]  *** Contents of shared directory: ***
[2025-12-19 13:05:00] total 334072
[2025-12-19 13:05:00] -rw-r--r-- 2 boinc boinc 190107304 Dec 19 11:47 ATLAS.root_0
[2025-12-19 13:05:00] -rw-r--r-- 2 boinc boinc    592401 Dec 19 11:47 input.tar.gz
[2025-12-19 13:05:00] -rw-r--r-- 2 boinc boinc     15847 Dec 19 11:47 start_atlas.sh
[2025-12-19 13:05:00] -rw------- 1 boinc boinc 150407887 Dec 19 13:03 HITS.pool.root.1
[2025-12-19 13:05:00] -rw------- 1 boinc boinc    952320 Dec 19 13:05 result.tar.gz
13:05:02 (681184): run_atlas exited; CPU time 17168.083528
13:05:02 (681184): called boinc_finish(0)

</stderr_txt>
]]>

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