Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:12:49 (631029): wrapper (7.7.26015): starting
09:12:49 (631029): wrapper: running run_atlas (--nthreads 4)
[2025-12-19 09:12:49] Arguments: --nthreads 4
[2025-12-19 09:12:49] Threads: 4
[2025-12-19 09:12:49] Checking for CVMFS
[2025-12-19 09:12:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 09:12:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 09:12:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 09:12:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 09:12:49] 2.9.2.0 3086 2061 92544 154181 3 57 33508573 36864001 0 130560 0 1634377 99.991 79593 15689 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-19 09:12:49] CVMFS is ok
[2025-12-19 09:12:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-19 09:12:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-19 09:12:49] Further information can be found at the LHC@home message board.
[2025-12-19 09:12:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 09:12:49] Checking for apptainer binary...
[2025-12-19 09:12:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 09:12:49] Running /usr/bin/apptainer --version
[2025-12-19 09:12:49] apptainer version 1.4.1-1.1
[2025-12-19 09:12:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 09:12:50] cosA131b
[2025-12-19 09:12:50] apptainer works
[2025-12-19 09:12:50] Set ATHENA_PROC_NUMBER=4
[2025-12-19 09:12:50] Set ATHENA_CORE_NUMBER=4
[2025-12-19 09:12:50] Starting ATLAS job with PandaID=6933834130
[2025-12-19 09:12:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 10:30:12]  *** The last 200 lines of the pilot log: ***
[2025-12-19 10:30:12]  protocol_id=None
[2025-12-19 10:30:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-19 10:30:12]  replicas=None
[2025-12-19 10:30:12]  scope=mc23_13p6TeV
[2025-12-19 10:30:12]  status=None
[2025-12-19 10:30:12]  status_code=0
[2025-12-19 10:30:12]  storage_token=
[2025-12-19 10:30:12]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6933834130/log.47886831._018026.job.log.tgz.1
[2025-12-19 10:30:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/47/log.47886831._018026.job.log.tgz.1
[2025-12-19 10:30:12]  workdir=None
[2025-12-19 10:30:12] ]
[2025-12-19 10:30:12] 2025-12-19 09:29:30,678 | INFO     | transferring file log.47886831._018026.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6933834130/log.47886831._018026.job.log.tgz.1 to /local/data/boinc/
[2025-12-19 10:30:12] 2025-12-19 09:29:30,678 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6933834130/log.47886831._018026.job.log.tgz.1 /local/data/boinc/slots/0/log.47886831._0180
[2025-12-19 10:30:12] 2025-12-19 09:29:30,698 | INFO     | adding to output.list: log.47886831._018026.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d1/47/log.47886831._018026.job.log.tg
[2025-12-19 10:30:12] 2025-12-19 09:29:30,699 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-19 10:30:12] 2025-12-19 09:29:30,699 | INFO     | summary of transferred files:
[2025-12-19 10:30:12] 2025-12-19 09:29:30,699 | INFO     |  -- lfn=log.47886831._018026.job.log.tgz.1, status_code=0, status=transferred
[2025-12-19 10:30:12] 2025-12-19 09:29:30,699 | INFO     | stage-out finished correctly
[2025-12-19 10:30:12] 2025-12-19 09:29:30,909 | INFO     | time since job start (4592s) is within the limit (174528.0s)
[2025-12-19 10:30:12] 2025-12-19 09:29:32,915 | INFO     | time since job start (4594s) is within the limit (174528.0s)
[2025-12-19 10:30:12] 2025-12-19 09:29:33,478 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-19 10:30:12] 2025-12-19 09:29:34,824 | INFO     | job 6933834130 has state=finished
[2025-12-19 10:30:12] 2025-12-19 09:29:34,825 | INFO     | preparing for final server update for job 6933834130 in state='finished'
[2025-12-19 10:30:12] 2025-12-19 09:29:34,825 | INFO     | this job has now completed (state=finished)
[2025-12-19 10:30:12] 2025-12-19 09:29:34,825 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-19 10:30:12] 2025-12-19 09:29:34,825 | INFO     | log transfer has been attempted: DONE
[2025-12-19 10:30:12] 2025-12-19 09:29:34,825 | INFO     | job 6933834130 has finished - writing final server update
[2025-12-19 10:30:12] 2025-12-19 09:29:34,825 | INFO     | total number of processed events: 400 (read)
[2025-12-19 10:30:12] 2025-12-19 09:29:34,826 | INFO     | executing command: lscpu
[2025-12-19 10:30:12] 2025-12-19 09:29:34,847 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-19 10:30:12] 2025-12-19 09:29:34,921 | INFO     | time since job start (4596s) is within the limit (174528.0s)
[2025-12-19 10:30:12] 2025-12-19 09:29:36,926 | INFO     | time since job start (4598s) is within the limit (174528.0s)
[2025-12-19 10:30:12] 2025-12-19 09:29:37,278 | WARNING  | process 641402 can no longer be monitored (due to stat problems) - aborting
[2025-12-19 10:30:12] 2025-12-19 09:29:37,279 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6933834130/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 10:30:12] 2025-12-19 09:29:37,326 | INFO     | number of running child processes to parent process 641402: 1
[2025-12-19 10:30:12] 2025-12-19 09:29:37,326 | INFO     | maximum number of monitored processes: 6
[2025-12-19 10:30:12] 2025-12-19 09:29:37,985 | INFO     | PID=634823 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-19 10:30:12] 2025-12-19 09:29:38,986 | INFO     | time since job start (4600s) is within the limit (174528.0s)
[2025-12-19 10:30:12] 2025-12-19 09:29:39,610 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-19 10:30:12] 2025-12-19 09:29:39,611 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3522.4751874999993
[2025-12-19 10:30:12] 2025-12-19 09:29:39,612 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6933834130/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 10:30:12] 2025-12-19 09:29:39,613 | INFO     | extracted standard info from prmon json
[2025-12-19 10:30:12] 2025-12-19 09:29:39,613 | INFO     | extracted standard memory fields from prmon json
[2025-12-19 10:30:12] 2025-12-19 09:29:39,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-19 10:30:12] 2025-12-19 09:29:39,613 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-19 10:30:12] 2025-12-19 09:29:39,613 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | fitting pss+swap vs Time
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | sum of square deviations: 97479037.0
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | sum of deviations: -1923327041.5
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | mean x: 1766134349.5
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | mean y: 2489825.3970588236
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | intersect: 34849509839.71421
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | chi2: 0.020560716936565294
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | current memory leak: -19.73 B/s (using 68 data points, chi2=0.02)
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | could have reported an average CPU frequency of 3744 MHz (6 samples)
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | ..............................
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | . Timing measurements:
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | . get job = 0 s
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | . initial setup = 1 s
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | . payload setup = 4 s
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | . stage-in = 0 s
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | . payload execution = 4570 s
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | . stage-out = 0 s
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | . log creation = 0 s
[2025-12-19 10:30:12] 2025-12-19 09:29:39,614 | INFO     | ..............................
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | 
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | job summary report
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | --------------------------------------------------
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | PanDA job id: 6933834130
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | task id: 47886831
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | errors: (none)
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | pilot state: finished 
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | transexitcode: 0
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | exeerrorcode: 0
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | exeerrordiag: 
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | exitcode: 0
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | exitmsg: OK
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | cpuconsumptiontime: 17395 s
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | nevents: 400
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | neventsw: 0
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | pid: 641402
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | pgrp: 641402
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | corecount: 4
[2025-12-19 10:30:12] 2025-12-19 09:29:39,654 | INFO     | event service: False
[2025-12-19 10:30:12] 2025-12-19 09:29:39,655 | INFO     | sizes: {0: 2283996, 4: 2284258, 11: 2284286, 4578: 2310579, 4579: 2319583, 4581: 2319639, 4588: 2319961}
[2025-12-19 10:30:12] 2025-12-19 09:29:39,655 | INFO     | --------------------------------------------------
[2025-12-19 10:30:12] 2025-12-19 09:29:39,655 | INFO     | 
[2025-12-19 10:30:12] 2025-12-19 09:29:39,655 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-19 10:30:12] 2025-12-19 09:29:39,672 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,672 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,672 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,672 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | job 6933834130 has completed (purged errors)
[2025-12-19 10:30:12] 2025-12-19 09:29:39,673 | INFO     | overall cleanup function is called
[2025-12-19 10:30:12] 2025-12-19 09:29:40,680 | INFO     | --- collectZombieJob: --- 10, [641402]
[2025-12-19 10:30:12] 2025-12-19 09:29:40,680 | INFO     | zombie collector waiting for pid 641402
[2025-12-19 10:30:12] 2025-12-19 09:29:40,680 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 10:30:12] 2025-12-19 09:29:40,680 | INFO     | collected zombie processes
[2025-12-19 10:30:12] 2025-12-19 09:29:40,681 | INFO     | will attempt to kill all subprocesses of pid=641402
[2025-12-19 10:30:12] 2025-12-19 09:29:40,724 | INFO     | process IDs to be killed: [641402] (in reverse order)
[2025-12-19 10:30:12] 2025-12-19 09:29:40,758 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 10:30:12] 2025-12-19 09:29:40,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 10:30:12] 2025-12-19 09:29:40,760 | INFO     | did not find any defunct processes belonging to 641402
[2025-12-19 10:30:12] 2025-12-19 09:29:40,761 | INFO     | did not find any defunct processes belonging to 641402
[2025-12-19 10:30:12] 2025-12-19 09:29:40,761 | INFO     | ready for new job
[2025-12-19 10:30:12] 2025-12-19 09:29:40,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 10:30:12] 2025-12-19 09:29:40,762 | INFO     | ***************************************
[2025-12-19 10:30:12] 2025-12-19 09:29:40,762 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 10:30:12] 2025-12-19 09:29:40,762 | INFO     | ***************************************
[2025-12-19 10:30:12] 2025-12-19 09:29:40,762 | INFO     | 
[2025-12-19 10:30:12] 2025-12-19 09:29:40,763 | INFO     | architecture information:
[2025-12-19 10:30:12] 2025-12-19 09:29:40,763 | INFO     | executing command: cat /etc/os-release
[2025-12-19 10:30:12] 2025-12-19 09:29:40,777 | INFO     | cat /etc/os-release:
[2025-12-19 10:30:12] NAME="CentOS Linux"
[2025-12-19 10:30:12] VERSION="7 (Core)"
[2025-12-19 10:30:12] ID="centos"
[2025-12-19 10:30:12] ID_LIKE="rhel fedora"
[2025-12-19 10:30:12] VERSION_ID="7"
[2025-12-19 10:30:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 10:30:12] ANSI_COLOR="0;31"
[2025-12-19 10:30:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 10:30:12] HOME_URL="https://www.centos.org/"
[2025-12-19 10:30:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 10:30:12] 
[2025-12-19 10:30:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 10:30:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 10:30:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 10:30:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 10:30:12] 
[2025-12-19 10:30:12] 2025-12-19 09:29:40,777 | INFO     | ***************************************
[2025-12-19 10:30:12] 2025-12-19 09:29:41,280 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-19 10:30:12] 2025-12-19 09:29:41,298 | INFO     | sufficient remaining disk space (322229501952 B)
[2025-12-19 10:30:12] 2025-12-19 09:29:41,298 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 10:30:12] 2025-12-19 09:29:41,298 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 10:30:12] 2025-12-19 09:29:41,298 | INFO     | update_server=False
[2025-12-19 10:30:12] 2025-12-19 09:29:41,299 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 10:30:12] 2025-12-19 09:29:41,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 10:30:12] 2025-12-19 09:29:41,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 10:30:12] 2025-12-19 09:29:41,299 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 10:30:12] 2025-12-19 09:29:41,299 | INFO     | aborting loop
[2025-12-19 10:30:12] 2025-12-19 09:29:42,304 | INFO     | [job] retrieve thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:42,305 | INFO     | [job] queue monitor thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:42,305 | INFO     | [job] job monitor thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:42,314 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:42,360 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:42,364 | INFO     | all data control threads have been joined
[2025-12-19 10:30:12] 2025-12-19 09:29:42,371 | INFO     | all payload control threads have been joined
[2025-12-19 10:30:12] 2025-12-19 09:29:42,581 | INFO     | [payload] validate_post thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:42,754 | INFO     | all job control threads have been joined
[2025-12-19 10:30:12] 2025-12-19 09:29:42,938 | INFO     | [data] copytool_in thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:43,305 | INFO     | [data] copytool_out thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:43,314 | INFO     | [payload] failed_post thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:43,339 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:43,370 | INFO     | [data] control thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:43,377 | INFO     | [payload] control thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:43,674 | INFO     | [job] validate thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:43,760 | INFO     | [job] control thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:44,030 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 10:30:12] 2025-12-19 09:29:48,037 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:29:52,322 | INFO     | job.realtimelogging is not enabled
[2025-12-19 10:30:12] 2025-12-19 09:29:53,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 10:30:12] 2025-12-19 09:30:03,106 | INFO     | [monitor] cgroup control has ended
[2025-12-19 10:30:12] 2025-12-19 09:30:04,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139834159421248)>', '<ExcThread(monitor, started 139832793757440)>']
[2025-12-19 10:30:12] 2025-12-19 09:30:09,138 | INFO     | all workflow threads have been joined
[2025-12-19 10:30:12] 2025-12-19 09:30:09,138 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 10:30:12] 2025-12-19 09:30:09,139 | INFO     | traces error code: 0
[2025-12-19 10:30:12] 2025-12-19 09:30:09,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 10:30:12] 2025-12-19 09:30:12,118 | INFO     | PID=634823 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-19 10:30:12] 2025-12-19 09:30:12,118 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 10:30:12] 2025-12-19 09:30:12,118 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 10:30:12] 2025-12-19 09:30:12,118 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 10:30:12] 2025-12-19 09:30:12,119 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 10:30:12] 2025-12-19 09:30:12,119 | INFO     | [monitor] control thread has ended
[2025-12-19 10:30:12] 2025-12-19 09:30:12,194 [wrapper] ==== pilot stdout END ====
[2025-12-19 10:30:12] 2025-12-19 09:30:12,198 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 10:30:12] 2025-12-19 09:30:12,202 [wrapper] pilotpid: 634823
[2025-12-19 10:30:12] 2025-12-19 09:30:12,206 [wrapper] Pilot exit status: 0
[2025-12-19 10:30:12] 2025-12-19 09:30:12,218 [wrapper] pandaids: 6933834130
[2025-12-19 10:30:12] 2025-12-19 09:30:12,240 [wrapper] cleanup supervisor_pilot  653524 634824
[2025-12-19 10:30:12] 2025-12-19 09:30:12,244 [wrapper] Test setup, not cleaning
[2025-12-19 10:30:12] 2025-12-19 09:30:12,248 [wrapper] apfmon messages muted
[2025-12-19 10:30:12] 2025-12-19 09:30:12,252 [wrapper] ==== wrapper stdout END ====
[2025-12-19 10:30:12] 2025-12-19 09:30:12,256 [wrapper] ==== wrapper stderr END ====
[2025-12-19 10:30:12]  *** Error codes and diagnostics ***
[2025-12-19 10:30:12]     "exeErrorCode": 0,
[2025-12-19 10:30:12]     "exeErrorDiag": "",
[2025-12-19 10:30:12]     "pilotErrorCode": 0,
[2025-12-19 10:30:12]     "pilotErrorDiag": "",
[2025-12-19 10:30:12]  *** Listing of results directory ***
[2025-12-19 10:30:12] total 342636
[2025-12-19 10:30:12] -rwx------ 1 boinc boinc     36322 Dec 18 11:44 runpilot2-wrapper.sh
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc      5112 Dec 18 11:44 queuedata.json
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc    579449 Dec 18 11:44 pilot3.tar.gz
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc       100 Dec 19 09:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 10:30:12] -rwxr-xr-x 1 boinc boinc      7986 Dec 19 09:12 run_atlas
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc       105 Dec 19 09:12 job.xml
[2025-12-19 10:30:12] -rw-r--r-- 2 boinc boinc 193354141 Dec 19 09:12 EVNT.47886829._000694.pool.root.1
[2025-12-19 10:30:12] -rw-r--r-- 2 boinc boinc    592411 Dec 19 09:12 input.tar.gz
[2025-12-19 10:30:12] -rw-r--r-- 2 boinc boinc     15847 Dec 19 09:12 start_atlas.sh
[2025-12-19 10:30:12] drwxrwx--x 2 boinc boinc      4096 Dec 19 09:12 shared
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc         0 Dec 19 09:12 boinc_setup_complete
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc      6378 Dec 19 09:12 init_data.xml
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc         0 Dec 19 09:12 boinc_lockfile
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc      2539 Dec 19 09:12 pandaJob.out
[2025-12-19 10:30:12] -rw------- 1 boinc boinc    988888 Dec 19 09:12 agis_schedconf.cvmfs.json
[2025-12-19 10:30:12] -rw------- 1 boinc boinc   1516240 Dec 19 09:12 agis_ddmendpoints.agis.ALL.json
[2025-12-19 10:30:12] drwx------ 5 boinc boinc      4096 Dec 19 09:12 pilot3
[2025-12-19 10:30:12] -rw------- 1 boinc boinc 151683139 Dec 19 10:29 HITS.47886831._018026.pool.root.1
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc       529 Dec 19 10:29 boinc_task_state.xml
[2025-12-19 10:30:12] -rw------- 1 boinc boinc        95 Dec 19 10:29 pilot_heartbeat.json
[2025-12-19 10:30:12] -rw------- 1 boinc boinc      1017 Dec 19 10:29 memory_monitor_summary.json
[2025-12-19 10:30:12] -rw------- 1 boinc boinc    275544 Dec 19 10:29 log.47886831._018026.job.log.tgz.1
[2025-12-19 10:30:12] -rw------- 1 boinc boinc      7756 Dec 19 10:29 heartbeat.json
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc      8192 Dec 19 10:29 boinc_mmap_file
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc        27 Dec 19 10:29 wrapper_checkpoint.txt
[2025-12-19 10:30:12] -rw------- 1 boinc boinc       746 Dec 19 10:30 pilotlog.txt
[2025-12-19 10:30:12] -rw------- 1 boinc boinc    679302 Dec 19 10:30 log.47886831._018026.job.log.1
[2025-12-19 10:30:12] -rw------- 1 boinc boinc       357 Dec 19 10:30 output.list
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc       620 Dec 19 10:30 runtime_log
[2025-12-19 10:30:12] -rw------- 1 boinc boinc    972800 Dec 19 10:30 result.tar.gz
[2025-12-19 10:30:12] -rw------- 1 boinc boinc       660 Dec 19 10:30 uFINDmyfQq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSpdKDmskIncm.diag
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc      8907 Dec 19 10:30 runtime_log.err
[2025-12-19 10:30:12] -rw-r--r-- 1 boinc boinc     21913 Dec 19 10:30 stderr.txt
[2025-12-19 10:30:12] HITS file was successfully produced:
[2025-12-19 10:30:12] -rw------- 1 boinc boinc 151683139 Dec 19 10:29 shared/HITS.pool.root.1
[2025-12-19 10:30:12]  *** Contents of shared directory: ***
[2025-12-19 10:30:12] total 338512
[2025-12-19 10:30:12] -rw-r--r-- 2 boinc boinc 193354141 Dec 19 09:12 ATLAS.root_0
[2025-12-19 10:30:12] -rw-r--r-- 2 boinc boinc    592411 Dec 19 09:12 input.tar.gz
[2025-12-19 10:30:12] -rw-r--r-- 2 boinc boinc     15847 Dec 19 09:12 start_atlas.sh
[2025-12-19 10:30:12] -rw------- 1 boinc boinc 151683139 Dec 19 10:29 HITS.pool.root.1
[2025-12-19 10:30:12] -rw------- 1 boinc boinc    972800 Dec 19 10:30 result.tar.gz
10:30:13 (631029): run_atlas exited; CPU time 17409.010086
10:30:13 (631029): called boinc_finish(0)

</stderr_txt>
]]>

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