Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:30:27 (15681): wrapper (7.7.26015): starting
13:30:27 (15681): wrapper: running run_atlas (--nthreads 8)
[2025-12-18 13:30:27] Arguments: --nthreads 8
[2025-12-18 13:30:27] Threads: 8
[2025-12-18 13:30:27] Checking for CVMFS
[2025-12-18 13:30:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 13:30:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 13:30:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 13:30:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 13:30:28] 2.11.2.0 18601 133908 141644 154161 2 16 10642456 18432001 1833 130560 0 95418774 99.985 4985021 31754 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-18 13:30:28] CVMFS is ok
[2025-12-18 13:30:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 13:30:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 13:30:28] Further information can be found at the LHC@home message board.
[2025-12-18 13:30:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 13:30:28] Checking for apptainer binary...
[2025-12-18 13:30:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 13:30:28] Running /usr/bin/apptainer --version
[2025-12-18 13:30:28] apptainer version 1.3.2-1.el7
[2025-12-18 13:30:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 13:30:29] c-206-13.aglt2.org
[2025-12-18 13:30:29] apptainer works
[2025-12-18 13:30:29] Set ATHENA_PROC_NUMBER=8
[2025-12-18 13:30:29] Set ATHENA_CORE_NUMBER=8
[2025-12-18 13:30:29] Starting ATLAS job with PandaID=6934030762
[2025-12-18 13:30:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 17:53:11]  *** The last 200 lines of the pilot log: ***
[2025-12-18 17:53:11] 2025-12-18 22:52:06,280 | WARNING  | process 25794 can no longer be monitored (due to stat problems) - aborting
[2025-12-18 17:53:11] 2025-12-18 22:52:06,281 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6934030762/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 17:53:11] 2025-12-18 22:52:06,445 | INFO     | number of running child processes to parent process 25794: 1
[2025-12-18 17:53:11] 2025-12-18 22:52:06,446 | INFO     | maximum number of monitored processes: 6
[2025-12-18 17:53:11] 2025-12-18 22:52:07,571 | INFO     | time since job start (15687s) is within the limit (174528.0s)
[2025-12-18 17:53:11] 2025-12-18 22:52:08,950 | INFO     | monitor loop #1125: job 0:6934030762 is in state 'finished'
[2025-12-18 17:53:11] 2025-12-18 22:52:08,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,191 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-18 17:53:11] 2025-12-18 22:52:09,195 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2350.3333333333335
[2025-12-18 17:53:11] 2025-12-18 22:52:09,197 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6934030762/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,198 | INFO     | extracted standard info from prmon json
[2025-12-18 17:53:11] 2025-12-18 22:52:09,198 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 17:53:11] 2025-12-18 22:52:09,198 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 17:53:11] 2025-12-18 22:52:09,198 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 17:53:11] 2025-12-18 22:52:09,198 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 17:53:11] 2025-12-18 22:52:09,202 | INFO     | fitting pss+swap vs Time
[2025-12-18 17:53:11] 2025-12-18 22:52:09,202 | INFO     | sum of square deviations: 5263458688.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,204 | INFO     | sum of deviations: 6185390972.000005
[2025-12-18 17:53:11] 2025-12-18 22:52:09,204 | INFO     | mean x: 1766090473.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,204 | INFO     | mean y: 2499518.0272373543
[2025-12-18 17:53:11] 2025-12-18 22:52:09,204 | INFO     | intersect: -2072934282.2483537
[2025-12-18 17:53:11] 2025-12-18 22:52:09,204 | INFO     | chi2: 1.5567167684624132
[2025-12-18 17:53:11] 2025-12-18 22:52:09,205 | INFO     | sum of square deviations: 4962187923.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,206 | INFO     | sum of deviations: 5663053828.000002
[2025-12-18 17:53:11] 2025-12-18 22:52:09,206 | INFO     | mean x: 1766090320.5
[2025-12-18 17:53:11] 2025-12-18 22:52:09,206 | INFO     | mean y: 2499253.595238095
[2025-12-18 17:53:11] 2025-12-18 22:52:09,207 | INFO     | intersect: -2013035971.0470943
[2025-12-18 17:53:11] 2025-12-18 22:52:09,207 | INFO     | chi2: 1.5564936486706142
[2025-12-18 17:53:11] 2025-12-18 22:52:09,207 | INFO     | current chi2=1.5564936486706142 (change=0.014332715900490173 %)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,207 | INFO     | right removable region: 251
[2025-12-18 17:53:11] 2025-12-18 22:52:09,207 | INFO     | sum of square deviations: 4962187923.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,209 | INFO     | sum of deviations: -30532242495.5
[2025-12-18 17:53:11] 2025-12-18 22:52:09,209 | INFO     | mean x: 1766090625.5
[2025-12-18 17:53:11] 2025-12-18 22:52:09,209 | INFO     | mean y: 2517930.646825397
[2025-12-18 17:53:11] 2025-12-18 22:52:09,209 | INFO     | intersect: 10869238031.443636
[2025-12-18 17:53:11] 2025-12-18 22:52:09,210 | INFO     | chi2: 0.20253920613235366
[2025-12-18 17:53:11] 2025-12-18 22:52:09,210 | INFO     | current chi2=0.20253920613235366 (change=86.98933484654347 %)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,210 | INFO     | sum of square deviations: 4672638308.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,211 | INFO     | sum of deviations: -30603239389.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,211 | INFO     | mean x: 1766090778.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,212 | INFO     | mean y: 2517940.983805668
[2025-12-18 17:53:11] 2025-12-18 22:52:09,212 | INFO     | intersect: 11569451929.712141
[2025-12-18 17:53:11] 2025-12-18 22:52:09,212 | INFO     | chi2: 0.18617864020145142
[2025-12-18 17:53:11] 2025-12-18 22:52:09,212 | INFO     | current chi2=0.18617864020145142 (change=8.077727884551432 %)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,212 | INFO     | left removable region: 20
[2025-12-18 17:53:11] 2025-12-18 22:52:09,213 | INFO     | sum of square deviations: 3822136780.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,214 | INFO     | sum of deviations: -14947333311.000006
[2025-12-18 17:53:11] 2025-12-18 22:52:09,214 | INFO     | mean x: 1766090900.0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,214 | INFO     | mean y: 2508963.2164502162
[2025-12-18 17:53:11] 2025-12-18 22:52:09,214 | INFO     | intersect: 6909208241.473044
[2025-12-18 17:53:11] 2025-12-18 22:52:09,214 | INFO     | chi2: 0.13886832170548769
[2025-12-18 17:53:11] 2025-12-18 22:52:09,215 | INFO     | current memory leak: -3.91 B/s (using 231 data points, chi2=0.14)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,215 | INFO     | could have reported an average CPU frequency of 2581 MHz (12 samples)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,215 | INFO     | ..............................
[2025-12-18 17:53:11] 2025-12-18 22:52:09,215 | INFO     | . Timing measurements:
[2025-12-18 17:53:11] 2025-12-18 22:52:09,215 | INFO     | . get job = 0 s
[2025-12-18 17:53:11] 2025-12-18 22:52:09,215 | INFO     | . initial setup = 2 s
[2025-12-18 17:53:11] 2025-12-18 22:52:09,215 | INFO     | . payload setup = 5 s
[2025-12-18 17:53:11] 2025-12-18 22:52:09,215 | INFO     | . stage-in = 0 s
[2025-12-18 17:53:11] 2025-12-18 22:52:09,216 | INFO     | . payload execution = 15656 s
[2025-12-18 17:53:11] 2025-12-18 22:52:09,216 | INFO     | . stage-out = 2 s
[2025-12-18 17:53:11] 2025-12-18 22:52:09,216 | INFO     | . log creation = 0 s
[2025-12-18 17:53:11] 2025-12-18 22:52:09,216 | INFO     | ..............................
[2025-12-18 17:53:11] 2025-12-18 22:52:09,289 | INFO     | 
[2025-12-18 17:53:11] 2025-12-18 22:52:09,290 | INFO     | job summary report
[2025-12-18 17:53:11] 2025-12-18 22:52:09,290 | INFO     | --------------------------------------------------
[2025-12-18 17:53:11] 2025-12-18 22:52:09,290 | INFO     | PanDA job id: 6934030762
[2025-12-18 17:53:11] 2025-12-18 22:52:09,290 | INFO     | task id: 47905857
[2025-12-18 17:53:11] 2025-12-18 22:52:09,290 | INFO     | errors: (none)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 17:53:11] 2025-12-18 22:52:09,290 | INFO     | pilot state: finished 
[2025-12-18 17:53:11] 2025-12-18 22:52:09,291 | INFO     | transexitcode: 0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,291 | INFO     | exeerrorcode: 0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,291 | INFO     | exeerrordiag: 
[2025-12-18 17:53:11] 2025-12-18 22:52:09,291 | INFO     | exitcode: 0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,291 | INFO     | exitmsg: OK
[2025-12-18 17:53:11] 2025-12-18 22:52:09,291 | INFO     | cpuconsumptiontime: 119998 s
[2025-12-18 17:53:11] 2025-12-18 22:52:09,292 | INFO     | nevents: 400
[2025-12-18 17:53:11] 2025-12-18 22:52:09,292 | INFO     | neventsw: 0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,292 | INFO     | pid: 25794
[2025-12-18 17:53:11] 2025-12-18 22:52:09,292 | INFO     | pgrp: 25794
[2025-12-18 17:53:11] 2025-12-18 22:52:09,292 | INFO     | corecount: 8
[2025-12-18 17:53:11] 2025-12-18 22:52:09,293 | INFO     | event service: False
[2025-12-18 17:53:11] 2025-12-18 22:52:09,293 | INFO     | sizes: {0: 2283685, 1: 2283940, 2: 2283940, 5: 2284230, 12: 2284286, 15665: 2315451, 15667: 2324449, 15669: 2324505, 15673: 2324699}
[2025-12-18 17:53:11] 2025-12-18 22:52:09,293 | INFO     | --------------------------------------------------
[2025-12-18 17:53:11] 2025-12-18 22:52:09,293 | INFO     | 
[2025-12-18 17:53:11] 2025-12-18 22:52:09,293 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-18 17:53:11] 2025-12-18 22:52:09,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,310 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,310 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,310 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,310 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,310 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,311 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,311 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,311 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,311 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,311 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,311 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,312 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 17:53:11] 2025-12-18 22:52:09,312 | INFO     | job 6934030762 has completed (purged errors)
[2025-12-18 17:53:11] 2025-12-18 22:52:09,312 | INFO     | overall cleanup function is called
[2025-12-18 17:53:11] 2025-12-18 22:52:10,321 | INFO     | --- collectZombieJob: --- 10, [25794]
[2025-12-18 17:53:11] 2025-12-18 22:52:10,321 | INFO     | zombie collector waiting for pid 25794
[2025-12-18 17:53:11] 2025-12-18 22:52:10,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 17:53:11] 2025-12-18 22:52:10,321 | INFO     | collected zombie processes
[2025-12-18 17:53:11] 2025-12-18 22:52:10,321 | INFO     | will attempt to kill all subprocesses of pid=25794
[2025-12-18 17:53:11] 2025-12-18 22:52:10,462 | INFO     | process IDs to be killed: [25794] (in reverse order)
[2025-12-18 17:53:11] 2025-12-18 22:52:10,521 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 17:53:11] 2025-12-18 22:52:10,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 17:53:11] 2025-12-18 22:52:10,526 | INFO     | did not find any defunct processes belonging to 25794
[2025-12-18 17:53:11] 2025-12-18 22:52:10,531 | INFO     | did not find any defunct processes belonging to 25794
[2025-12-18 17:53:11] 2025-12-18 22:52:10,532 | INFO     | ready for new job
[2025-12-18 17:53:11] 2025-12-18 22:52:10,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 17:53:11] 2025-12-18 22:52:10,534 | INFO     | ***************************************
[2025-12-18 17:53:11] 2025-12-18 22:52:10,534 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 17:53:11] 2025-12-18 22:52:10,534 | INFO     | ***************************************
[2025-12-18 17:53:11] 2025-12-18 22:52:10,535 | INFO     | 
[2025-12-18 17:53:11] 2025-12-18 22:52:10,536 | INFO     | architecture information:
[2025-12-18 17:53:11] 2025-12-18 22:52:10,536 | INFO     | executing command: cat /etc/os-release
[2025-12-18 17:53:11] 2025-12-18 22:52:10,553 | INFO     | cat /etc/os-release:
[2025-12-18 17:53:11] NAME="CentOS Linux"
[2025-12-18 17:53:11] VERSION="7 (Core)"
[2025-12-18 17:53:11] ID="centos"
[2025-12-18 17:53:11] ID_LIKE="rhel fedora"
[2025-12-18 17:53:11] VERSION_ID="7"
[2025-12-18 17:53:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 17:53:11] ANSI_COLOR="0;31"
[2025-12-18 17:53:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 17:53:11] HOME_URL="https://www.centos.org/"
[2025-12-18 17:53:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 17:53:11] 
[2025-12-18 17:53:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 17:53:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 17:53:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 17:53:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 17:53:11] 
[2025-12-18 17:53:11] 2025-12-18 22:52:10,553 | INFO     | ***************************************
[2025-12-18 17:53:11] 2025-12-18 22:52:11,057 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-18 17:53:11] 2025-12-18 22:52:11,083 | INFO     | sufficient remaining disk space (28353495040 B)
[2025-12-18 17:53:11] 2025-12-18 22:52:11,083 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 17:53:11] 2025-12-18 22:52:11,083 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 17:53:11] 2025-12-18 22:52:11,083 | INFO     | update_server=False
[2025-12-18 17:53:11] 2025-12-18 22:52:11,084 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 17:53:11] 2025-12-18 22:52:11,084 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 17:53:11] 2025-12-18 22:52:11,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 17:53:11] 2025-12-18 22:52:11,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 17:53:11] 2025-12-18 22:52:11,454 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-18 17:53:11] 2025-12-18 22:52:11,455 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-18 17:53:11] 2025-12-18 22:52:11,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 17:53:11] 2025-12-18 22:52:11,455 | INFO     | will abort loop
[2025-12-18 17:53:11] 2025-12-18 22:52:11,507 | INFO     | all payload control threads have been joined
[2025-12-18 17:53:11] 2025-12-18 22:52:11,771 | INFO     | all job control threads have been joined
[2025-12-18 17:53:11] 2025-12-18 22:52:11,841 | INFO     | all data control threads have been joined
[2025-12-18 17:53:11] 2025-12-18 22:52:12,085 | INFO     | [job] retrieve thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,090 | INFO     | [job] queue monitor thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,461 | INFO     | [job] job monitor thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,513 | INFO     | [payload] control thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,675 | INFO     | [data] copytool_in thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,689 | INFO     | [job] validate thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,777 | INFO     | [job] control thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,843 | INFO     | [data] control thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,843 | INFO     | [payload] validate_post thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:12,985 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:13,090 | INFO     | [data] copytool_out thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:13,330 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:13,501 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:13,512 | INFO     | [payload] failed_post thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:13,519 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:15,093 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 17:53:11] 2025-12-18 22:52:40,757 | INFO     | PID=19402 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-18 17:53:11] 2025-12-18 22:52:40,757 | INFO     | .. there are 3 such processes running
[2025-12-18 17:53:11] 2025-12-18 22:52:40,757 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 17:53:11] 2025-12-18 22:52:40,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 17:53:11] 2025-12-18 22:52:40,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 17:53:11] 2025-12-18 22:53:05,512 | INFO     | [monitor] cgroup control has ended
[2025-12-18 17:53:11] 2025-12-18 22:53:06,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888924403520)>', '<ExcThread(monitor, started 139888225679104)>']
[2025-12-18 17:53:11] 2025-12-18 22:53:06,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 17:53:11] 2025-12-18 22:53:06,877 | INFO     | [monitor] control thread has ended
[2025-12-18 17:53:11] 2025-12-18 22:53:11,083 | INFO     | all workflow threads have been joined
[2025-12-18 17:53:11] 2025-12-18 22:53:11,090 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 17:53:11] 2025-12-18 22:53:11,091 | INFO     | traces error code: 0
[2025-12-18 17:53:11] 2025-12-18 22:53:11,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 17:53:11] 2025-12-18 22:53:11,200 [wrapper] ==== pilot stdout END ====
[2025-12-18 17:53:11] 2025-12-18 22:53:11,202 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 17:53:11] 2025-12-18 22:53:11,204 [wrapper] pilotpid: 19402
[2025-12-18 17:53:11] 2025-12-18 22:53:11,206 [wrapper] Pilot exit status: 0
[2025-12-18 17:53:11] 2025-12-18 22:53:11,214 [wrapper] pandaids: 6934030762
[2025-12-18 17:53:11] 2025-12-18 22:53:11,243 [wrapper] cleanup supervisor_pilot 20441 19403
[2025-12-18 17:53:11] 2025-12-18 22:53:11,245 [wrapper] Test setup, not cleaning
[2025-12-18 17:53:11] 2025-12-18 22:53:11,247 [wrapper] apfmon messages muted
[2025-12-18 17:53:11] 2025-12-18 22:53:11,250 [wrapper] ==== wrapper stdout END ====
[2025-12-18 17:53:11] 2025-12-18 22:53:11,252 [wrapper] ==== wrapper stderr END ====
[2025-12-18 17:53:11]  *** Error codes and diagnostics ***
[2025-12-18 17:53:11]     "exeErrorCode": 0,
[2025-12-18 17:53:11]     "exeErrorDiag": "",
[2025-12-18 17:53:11]     "pilotErrorCode": 0,
[2025-12-18 17:53:11]     "pilotErrorDiag": "",
[2025-12-18 17:53:11]  *** Listing of results directory ***
[2025-12-18 17:53:11] total 407848
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas    579449 Dec 18 08:26 pilot3.tar.gz
[2025-12-18 17:53:11] -rwx------ 1 boincer umatlas     36322 Dec 18 08:30 runpilot2-wrapper.sh
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas      5112 Dec 18 08:32 queuedata.json
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas       100 Dec 18 13:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 17:53:11] -rwxr-xr-x 1 boincer umatlas      7986 Dec 18 13:30 run_atlas
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas       105 Dec 18 13:30 job.xml
[2025-12-18 17:53:11] -rw-r--r-- 2 boincer umatlas 203821730 Dec 18 13:30 EVNT.47905855._000043.pool.root.1
[2025-12-18 17:53:11] -rw-r--r-- 2 boincer umatlas     15847 Dec 18 13:30 start_atlas.sh
[2025-12-18 17:53:11] drwxrwx--x 2 boincer umatlas      4096 Dec 18 13:30 shared
[2025-12-18 17:53:11] -rw-r--r-- 2 boincer umatlas    592377 Dec 18 13:30 input.tar.gz
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas         0 Dec 18 13:30 boinc_lockfile
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas      2477 Dec 18 13:30 pandaJob.out
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas        57 Dec 18 13:30 setup.sh.local
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas    988872 Dec 18 13:30 agis_schedconf.cvmfs.json
[2025-12-18 17:53:11] drwx------ 5 boincer umatlas      4096 Dec 18 13:30 pilot3
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas      5952 Dec 18 17:47 init_data.xml
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas 204554070 Dec 18 17:51 HITS.47905857._001073.pool.root.1
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas       532 Dec 18 17:51 boinc_task_state.xml
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas      1069 Dec 18 17:51 memory_monitor_summary.json
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas   1516240 Dec 18 17:52 agis_ddmendpoints.agis.ALL.json
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas    492882 Dec 18 17:52 log.47905857._001073.job.log.tgz.1
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas        95 Dec 18 17:52 pilot_heartbeat.json
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas      7852 Dec 18 17:52 heartbeat.json
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas      8192 Dec 18 17:52 boinc_mmap_file
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas        29 Dec 18 17:52 wrapper_checkpoint.txt
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas      5007 Dec 18 17:53 pilotlog.txt
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas   2176045 Dec 18 17:53 log.47905857._001073.job.log.1
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas       357 Dec 18 17:53 output.list
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas       620 Dec 18 17:53 runtime_log
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas   2693120 Dec 18 17:53 result.tar.gz
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas       663 Dec 18 17:53 uEULDm5FTq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLTZKDmDa75lm.diag
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas      9343 Dec 18 17:53 runtime_log.err
[2025-12-18 17:53:11] -rw-r--r-- 1 boincer umatlas     21329 Dec 18 17:53 stderr.txt
[2025-12-18 17:53:11] HITS file was successfully produced:
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas 204554070 Dec 18 17:51 shared/HITS.pool.root.1
[2025-12-18 17:53:11]  *** Contents of shared directory: ***
[2025-12-18 17:53:11] total 402040
[2025-12-18 17:53:11] -rw-r--r-- 2 boincer umatlas 203821730 Dec 18 13:30 ATLAS.root_0
[2025-12-18 17:53:11] -rw-r--r-- 2 boincer umatlas     15847 Dec 18 13:30 start_atlas.sh
[2025-12-18 17:53:11] -rw-r--r-- 2 boincer umatlas    592377 Dec 18 13:30 input.tar.gz
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas 204554070 Dec 18 17:51 HITS.pool.root.1
[2025-12-18 17:53:11] -rw------- 1 boincer umatlas   2693120 Dec 18 17:53 result.tar.gz
17:53:13 (15681): run_atlas exited; CPU time 120209.942823
17:53:13 (15681): called boinc_finish(0)

</stderr_txt>
]]>

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