Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:27:06 (1576139): wrapper (7.7.26015): starting
07:27:06 (1576139): wrapper: running run_atlas (--nthreads 4)
[2025-12-25 07:27:06] Arguments: --nthreads 4
[2025-12-25 07:27:06] Threads: 4
[2025-12-25 07:27:06] Checking for CVMFS
[2025-12-25 07:27:06] No cvmfs_config command found, will try listing directly
[2025-12-25 07:27:06] CVMFS is ok
[2025-12-25 07:27:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-25 07:27:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-25 07:27:06] Further information can be found at the LHC@home message board.
[2025-12-25 07:27:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-25 07:27:06] Checking for apptainer binary...
[2025-12-25 07:27:06] which: no apptainer in ((null))
[2025-12-25 07:27:06] apptainer is not installed, using version from CVMFS
[2025-12-25 07:27:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-25 07:27:06] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot100/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-12-25 07:27:06] apptainer works
[2025-12-25 07:27:06] Set ATHENA_PROC_NUMBER=4
[2025-12-25 07:27:06] Set ATHENA_CORE_NUMBER=4
[2025-12-25 07:27:07] Starting ATLAS job with PandaID=6933846230
[2025-12-25 07:27:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot100/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-25 10:49:47]  *** The last 200 lines of the pilot log: ***
[2025-12-25 10:49:47] 2025-12-25 09:49:01,683 | INFO     | time since job start (12099s) is within the limit (174528.0s)
[2025-12-25 10:49:47] 2025-12-25 09:49:03,688 | INFO     | time since job start (12101s) is within the limit (174528.0s)
[2025-12-25 10:49:47] 2025-12-25 09:49:04,085 | INFO     | monitor loop #817: job 0:6933846230 is in state 'finished'
[2025-12-25 10:49:47] 2025-12-25 09:49:04,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-25 10:49:47] 2025-12-25 09:49:05,782 | INFO     | PID=1587998 has CPU usage=17.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-25 10:49:47] 2025-12-25 09:49:05,782 | INFO     | .. there are 7 such processes running
[2025-12-25 10:49:47] 2025-12-25 09:49:05,956 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-25 10:49:47] 2025-12-25 09:49:05,977 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2750.8293124999996
[2025-12-25 10:49:47] 2025-12-25 09:49:06,001 | INFO     | using path: /var/lib/boinc/var/slot100/slots/4/PanDA_Pilot-6933846230/memory_monitor_summary.json (trf name=prmon)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,002 | INFO     | extracted standard info from prmon json
[2025-12-25 10:49:47] 2025-12-25 09:49:06,002 | INFO     | extracted standard memory fields from prmon json
[2025-12-25 10:49:47] 2025-12-25 09:49:06,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-25 10:49:47] 2025-12-25 09:49:06,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-25 10:49:47] 2025-12-25 09:49:06,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-25 10:49:47] 2025-12-25 09:49:06,006 | INFO     | fitting pss+swap vs Time
[2025-12-25 10:49:47] 2025-12-25 09:49:06,006 | INFO     | sum of square deviations: 2406926989.5
[2025-12-25 10:49:47] 2025-12-25 09:49:06,008 | INFO     | sum of deviations: 12106013639.999994
[2025-12-25 10:49:47] 2025-12-25 09:49:06,008 | INFO     | mean x: 1766650085.5
[2025-12-25 10:49:47] 2025-12-25 09:49:06,008 | INFO     | mean y: 2332788.2525252528
[2025-12-25 10:49:47] 2025-12-25 09:49:06,008 | INFO     | intersect: -8883308581.622585
[2025-12-25 10:49:47] 2025-12-25 09:49:06,008 | INFO     | chi2: 1.201238982180533
[2025-12-25 10:49:47] 2025-12-25 09:49:06,009 | INFO     | sum of square deviations: 2229146912.0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,010 | INFO     | sum of deviations: 11727817910.000004
[2025-12-25 10:49:47] 2025-12-25 09:49:06,010 | INFO     | mean x: 1766649933.0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,010 | INFO     | mean y: 2332463.766839378
[2025-12-25 10:49:47] 2025-12-25 09:49:06,010 | INFO     | intersect: -9292231574.791111
[2025-12-25 10:49:47] 2025-12-25 09:49:06,010 | INFO     | chi2: 1.201860156209842
[2025-12-25 10:49:47] 2025-12-25 09:49:06,011 | INFO     | current chi2=1.201860156209842 (change=-0.05171111148770667 %)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,011 | INFO     | right removable region: 192
[2025-12-25 10:49:47] 2025-12-25 09:49:06,011 | INFO     | sum of square deviations: 2229146912.0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,012 | INFO     | sum of deviations: -9904943991.000002
[2025-12-25 10:49:47] 2025-12-25 09:49:06,012 | INFO     | mean x: 1766650238.0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,012 | INFO     | mean y: 2351397.248704663
[2025-12-25 10:49:47] 2025-12-25 09:49:06,012 | INFO     | intersect: 7852247500.945625
[2025-12-25 10:49:47] 2025-12-25 09:49:06,013 | INFO     | chi2: 0.022059055119927704
[2025-12-25 10:49:47] 2025-12-25 09:49:06,013 | INFO     | current chi2=0.022059055119927704 (change=98.1636414196378 %)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,013 | INFO     | sum of square deviations: 2060343747.0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,014 | INFO     | sum of deviations: -7740335750.0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,014 | INFO     | mean x: 1766650390.5
[2025-12-25 10:49:47] 2025-12-25 09:49:06,014 | INFO     | mean y: 2349437.340425532
[2025-12-25 10:49:47] 2025-12-25 09:49:06,014 | INFO     | intersect: 6639332802.494692
[2025-12-25 10:49:47] 2025-12-25 09:49:06,015 | INFO     | chi2: 0.019684991342980407
[2025-12-25 10:49:47] 2025-12-25 09:49:06,015 | INFO     | current chi2=0.019684991342980407 (change=10.762309464482076 %)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,015 | INFO     | left removable region: 20
[2025-12-25 10:49:47] 2025-12-25 09:49:06,015 | INFO     | sum of square deviations: 1577789583.0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,016 | INFO     | sum of deviations: -3461881454.9999995
[2025-12-25 10:49:47] 2025-12-25 09:49:06,016 | INFO     | mean x: 1766650512.5
[2025-12-25 10:49:47] 2025-12-25 09:49:06,016 | INFO     | mean y: 2345286.8604651163
[2025-12-25 10:49:47] 2025-12-25 09:49:06,016 | INFO     | intersect: 3878612890.973551
[2025-12-25 10:49:47] 2025-12-25 09:49:06,017 | INFO     | chi2: 0.011825073057339089
[2025-12-25 10:49:47] 2025-12-25 09:49:06,017 | INFO     | current memory leak: -2.19 B/s (using 172 data points, chi2=0.01)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,017 | INFO     | could have reported an average CPU frequency of 2750 MHz (10 samples)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,017 | INFO     | ..............................
[2025-12-25 10:49:47] 2025-12-25 09:49:06,017 | INFO     | . Timing measurements:
[2025-12-25 10:49:47] 2025-12-25 09:49:06,017 | INFO     | . get job = 0 s
[2025-12-25 10:49:47] 2025-12-25 09:49:06,017 | INFO     | . initial setup = 1 s
[2025-12-25 10:49:47] 2025-12-25 09:49:06,017 | INFO     | . payload setup = 9 s
[2025-12-25 10:49:47] 2025-12-25 09:49:06,018 | INFO     | . stage-in = 0 s
[2025-12-25 10:49:47] 2025-12-25 09:49:06,018 | INFO     | . payload execution = 12059 s
[2025-12-25 10:49:47] 2025-12-25 09:49:06,018 | INFO     | . stage-out = 1 s
[2025-12-25 10:49:47] 2025-12-25 09:49:06,018 | INFO     | . log creation = 0 s
[2025-12-25 10:49:47] 2025-12-25 09:49:06,018 | INFO     | ..............................
[2025-12-25 10:49:47] 2025-12-25 09:49:06,111 | INFO     | 
[2025-12-25 10:49:47] 2025-12-25 09:49:06,111 | INFO     | job summary report
[2025-12-25 10:49:47] 2025-12-25 09:49:06,111 | INFO     | --------------------------------------------------
[2025-12-25 10:49:47] 2025-12-25 09:49:06,111 | INFO     | PanDA job id: 6933846230
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | task id: 47905857
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | errors: (none)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | pilot state: finished 
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | transexitcode: 0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | exeerrorcode: 0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | exeerrordiag: 
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | exitcode: 0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | exitmsg: OK
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | cpuconsumptiontime: 46556 s
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | nevents: 400
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | neventsw: 0
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | pid: 1610476
[2025-12-25 10:49:47] 2025-12-25 09:49:06,112 | INFO     | pgrp: 1610476
[2025-12-25 10:49:47] 2025-12-25 09:49:06,113 | INFO     | corecount: 4
[2025-12-25 10:49:47] 2025-12-25 09:49:06,113 | INFO     | event service: False
[2025-12-25 10:49:47] 2025-12-25 09:49:06,113 | INFO     | sizes: {0: 2283806, 1: 2283948, 8: 2284210, 11: 2284238, 12073: 2314254, 12075: 2323276, 12077: 2323488, 12086: 2323682}
[2025-12-25 10:49:47] 2025-12-25 09:49:06,113 | INFO     | --------------------------------------------------
[2025-12-25 10:49:47] 2025-12-25 09:49:06,113 | INFO     | 
[2025-12-25 10:49:47] 2025-12-25 09:49:06,113 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot100/slots/4
[2025-12-25 10:49:47] 2025-12-25 09:49:06,150 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,150 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,150 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,150 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,152 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,152 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,152 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,152 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,152 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-25 10:49:47] 2025-12-25 09:49:06,152 | INFO     | job 6933846230 has completed (purged errors)
[2025-12-25 10:49:47] 2025-12-25 09:49:06,152 | INFO     | overall cleanup function is called
[2025-12-25 10:49:47] 2025-12-25 09:49:07,161 | INFO     | --- collectZombieJob: --- 10, [1610476]
[2025-12-25 10:49:47] 2025-12-25 09:49:07,162 | INFO     | zombie collector waiting for pid 1610476
[2025-12-25 10:49:47] 2025-12-25 09:49:07,162 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-25 10:49:47] 2025-12-25 09:49:07,162 | INFO     | collected zombie processes
[2025-12-25 10:49:47] 2025-12-25 09:49:07,162 | INFO     | will attempt to kill all subprocesses of pid=1610476
[2025-12-25 10:49:47] 2025-12-25 09:49:08,061 | INFO     | process IDs to be killed: [1610476] (in reverse order)
[2025-12-25 10:49:47] 2025-12-25 09:49:08,373 | WARNING  | found no corresponding commands to process id(s)
[2025-12-25 10:49:47] 2025-12-25 09:49:08,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-25 10:49:47] 2025-12-25 09:49:08,412 | INFO     | did not find any defunct processes belonging to 1610476
[2025-12-25 10:49:47] 2025-12-25 09:49:08,452 | INFO     | did not find any defunct processes belonging to 1610476
[2025-12-25 10:49:47] 2025-12-25 09:49:08,452 | INFO     | ready for new job
[2025-12-25 10:49:47] 2025-12-25 09:49:08,453 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-25 10:49:47] 2025-12-25 09:49:08,456 | INFO     | ***************************************
[2025-12-25 10:49:47] 2025-12-25 09:49:08,456 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-25 10:49:47] 2025-12-25 09:49:08,456 | INFO     | ***************************************
[2025-12-25 10:49:47] 2025-12-25 09:49:08,456 | INFO     | 
[2025-12-25 10:49:47] 2025-12-25 09:49:08,464 | INFO     | architecture information:
[2025-12-25 10:49:47] 2025-12-25 09:49:08,465 | INFO     | executing command: cat /etc/os-release
[2025-12-25 10:49:47] 2025-12-25 09:49:08,486 | INFO     | cat /etc/os-release:
[2025-12-25 10:49:47] NAME="CentOS Linux"
[2025-12-25 10:49:47] VERSION="7 (Core)"
[2025-12-25 10:49:47] ID="centos"
[2025-12-25 10:49:47] ID_LIKE="rhel fedora"
[2025-12-25 10:49:47] VERSION_ID="7"
[2025-12-25 10:49:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-25 10:49:47] ANSI_COLOR="0;31"
[2025-12-25 10:49:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-25 10:49:47] HOME_URL="https://www.centos.org/"
[2025-12-25 10:49:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-25 10:49:47] 
[2025-12-25 10:49:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-25 10:49:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-25 10:49:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-25 10:49:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-25 10:49:47] 
[2025-12-25 10:49:47] 2025-12-25 09:49:08,490 | INFO     | ***************************************
[2025-12-25 10:49:47] 2025-12-25 09:49:08,993 | INFO     | executing command: df -mP /var/lib/boinc/var/slot100/slots/4
[2025-12-25 10:49:47] 2025-12-25 09:49:09,016 | INFO     | sufficient remaining disk space (298757128192 B)
[2025-12-25 10:49:47] 2025-12-25 09:49:09,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-25 10:49:47] 2025-12-25 09:49:09,016 | INFO     | current server update state: UPDATING_FINAL
[2025-12-25 10:49:47] 2025-12-25 09:49:09,017 | INFO     | update_server=False
[2025-12-25 10:49:47] 2025-12-25 09:49:09,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-25 10:49:47] 2025-12-25 09:49:09,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-25 10:49:47] 2025-12-25 09:49:09,096 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-25 10:49:47] 2025-12-25 09:49:09,097 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-25 10:49:47] 2025-12-25 09:49:09,097 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-25 10:49:47] 2025-12-25 09:49:09,097 | INFO     | will abort loop
[2025-12-25 10:49:47] 2025-12-25 09:49:09,494 | INFO     | all payload control threads have been joined
[2025-12-25 10:49:47] 2025-12-25 09:49:09,695 | INFO     | all job control threads have been joined
[2025-12-25 10:49:47] 2025-12-25 09:49:10,005 | INFO     | all data control threads have been joined
[2025-12-25 10:49:47] 2025-12-25 09:49:10,026 | INFO     | [job] retrieve thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:10,101 | INFO     | [job] job monitor thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:10,251 | INFO     | [payload] failed_post thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:10,254 | INFO     | [payload] validate_post thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:10,500 | INFO     | [payload] control thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:10,597 | INFO     | [payload] execute_payloads thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:10,699 | INFO     | [job] control thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:10,994 | INFO     | [job] validate thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:11,010 | INFO     | [data] control thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:11,023 | INFO     | [data] copytool_out thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:11,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-25 10:49:47] 2025-12-25 09:49:11,275 | INFO     | [payload] validate_pre thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:11,317 | INFO     | [data] copytool_in thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:11,399 | INFO     | [job] create_data_payload thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:12,125 | INFO     | [job] queue monitor thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:12,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-25 10:49:47] 2025-12-25 09:49:16,306 | INFO     | [data] queue_monitor thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:19,467 | INFO     | job.realtimelogging is not enabled
[2025-12-25 10:49:47] 2025-12-25 09:49:20,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-25 10:49:47] 2025-12-25 09:49:38,856 | INFO     | PID=1587998 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-25 10:49:47] 2025-12-25 09:49:38,857 | INFO     | .. there are 7 such processes running
[2025-12-25 10:49:47] 2025-12-25 09:49:38,857 | INFO     | found 0 job(s) in 20 queues
[2025-12-25 10:49:47] 2025-12-25 09:49:38,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-25 10:49:47] 2025-12-25 09:49:38,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-25 10:49:47] 2025-12-25 09:49:40,393 | INFO     | [monitor] cgroup control has ended
[2025-12-25 10:49:47] 2025-12-25 09:49:42,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22513310197568)>', '<ExcThread(monitor, started 22513004300032)>']
[2025-12-25 10:49:47] 2025-12-25 09:49:42,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-25 10:49:47] 2025-12-25 09:49:42,876 | INFO     | [monitor] control thread has ended
[2025-12-25 10:49:47] 2025-12-25 09:49:47,259 | INFO     | all workflow threads have been joined
[2025-12-25 10:49:47] 2025-12-25 09:49:47,259 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-25 10:49:47] 2025-12-25 09:49:47,260 | INFO     | traces error code: 0
[2025-12-25 10:49:47] 2025-12-25 09:49:47,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-25 10:49:47] 2025-12-25 09:49:47,418 [wrapper] ==== pilot stdout END ====
[2025-12-25 10:49:47] 2025-12-25 09:49:47,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-25 10:49:47] 2025-12-25 09:49:47,426 [wrapper] pilotpid: 1587998
[2025-12-25 10:49:47] 2025-12-25 09:49:47,429 [wrapper] Pilot exit status: 0
[2025-12-25 10:49:47] 2025-12-25 09:49:47,444 [wrapper] pandaids: 6933846230
[2025-12-25 10:49:47] 2025-12-25 09:49:47,675 [wrapper] cleanup supervisor_pilot 2061800 1587999
[2025-12-25 10:49:47] 2025-12-25 09:49:47,678 [wrapper] Test setup, not cleaning
[2025-12-25 10:49:47] 2025-12-25 09:49:47,682 [wrapper] apfmon messages muted
[2025-12-25 10:49:47] 2025-12-25 09:49:47,684 [wrapper] ==== wrapper stdout END ====
[2025-12-25 10:49:47] 2025-12-25 09:49:47,687 [wrapper] ==== wrapper stderr END ====
[2025-12-25 10:49:47]  *** Error codes and diagnostics ***
[2025-12-25 10:49:47]     "exeErrorCode": 0,
[2025-12-25 10:49:47]     "exeErrorDiag": "",
[2025-12-25 10:49:47]     "pilotErrorCode": 0,
[2025-12-25 10:49:47]     "pilotErrorDiag": "",
[2025-12-25 10:49:47]  *** Listing of results directory ***
[2025-12-25 10:49:47] total 398812
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc      5112 Dec 18 14:26 queuedata.json
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc    579449 Dec 18 14:26 pilot3.tar.gz
[2025-12-25 10:49:47] -rwx------. 1 boinc boinc     36322 Dec 18 14:26 runpilot2-wrapper.sh
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc       100 Dec 25 07:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-25 10:49:47] -rwxr-xr-x. 1 boinc boinc      7986 Dec 25 07:27 run_atlas
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc       105 Dec 25 07:27 job.xml
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc      6689 Dec 25 07:27 init_data.xml
[2025-12-25 10:49:47] -rw-r--r--. 2 boinc boinc 200385726 Dec 25 07:27 EVNT.47905855._000032.pool.root.1
[2025-12-25 10:49:47] -rw-r--r--. 2 boinc boinc    592378 Dec 25 07:27 input.tar.gz
[2025-12-25 10:49:47] -rw-r--r--. 2 boinc boinc     15847 Dec 25 07:27 start_atlas.sh
[2025-12-25 10:49:47] drwxrwx--x. 2 boinc boinc      4096 Dec 25 07:27 shared
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc         0 Dec 25 07:27 boinc_lockfile
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc      2475 Dec 25 07:27 pandaJob.out
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc    989250 Dec 25 07:27 agis_schedconf.cvmfs.json
[2025-12-25 10:49:47] drwx------. 5 boinc boinc      4096 Dec 25 07:27 pilot3
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc 200003719 Dec 25 10:48 HITS.47905857._000784.pool.root.1
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc       529 Dec 25 10:48 boinc_task_state.xml
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc        95 Dec 25 10:48 pilot_heartbeat.json
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc      1034 Dec 25 10:48 memory_monitor_summary.json
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc   1516240 Dec 25 10:48 agis_ddmendpoints.agis.ALL.json
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc    366698 Dec 25 10:48 log.47905857._000784.job.log.tgz.1
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc      7791 Dec 25 10:49 heartbeat.json
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc      8192 Dec 25 10:49 boinc_mmap_file
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc        26 Dec 25 10:49 wrapper_checkpoint.txt
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc      5092 Dec 25 10:49 pilotlog.txt
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc   1668286 Dec 25 10:49 log.47905857._000784.job.log.1
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc       357 Dec 25 10:49 output.list
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc       620 Dec 25 10:49 runtime_log
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc   2058240 Dec 25 10:49 result.tar.gz
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc      9223 Dec 25 10:49 runtime_log.err
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc       665 Dec 25 10:49 H2eLDm2CTq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUMZKDmJYpHNn.diag
[2025-12-25 10:49:47] -rw-r--r--. 1 boinc boinc     21156 Dec 25 10:49 stderr.txt
[2025-12-25 10:49:47] HITS file was successfully produced:
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc 200003719 Dec 25 10:48 shared/HITS.pool.root.1
[2025-12-25 10:49:47]  *** Contents of shared directory: ***
[2025-12-25 10:49:47] total 393628
[2025-12-25 10:49:47] -rw-r--r--. 2 boinc boinc 200385726 Dec 25 07:27 ATLAS.root_0
[2025-12-25 10:49:47] -rw-r--r--. 2 boinc boinc    592378 Dec 25 07:27 input.tar.gz
[2025-12-25 10:49:47] -rw-r--r--. 2 boinc boinc     15847 Dec 25 07:27 start_atlas.sh
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc 200003719 Dec 25 10:48 HITS.pool.root.1
[2025-12-25 10:49:47] -rw-------. 1 boinc boinc   2058240 Dec 25 10:49 result.tar.gz
10:49:49 (1576139): run_atlas exited; CPU time 47406.668787
10:49:49 (1576139): called boinc_finish(0)

</stderr_txt>
]]>

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