Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:54 (9633): wrapper (7.7.26015): starting
00:58:54 (9633): wrapper: running run_atlas (--nthreads 8)
[2025-12-19 00:58:54] Arguments: --nthreads 8
[2025-12-19 00:58:54] Threads: 8
[2025-12-19 00:58:54] Checking for CVMFS
[2025-12-19 00:58:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 00:58:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 00:58:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 00:58:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 00:58:57] 2.11.2.0 6904 4426 65788 154169 2 66 16494813 25165825 2113 130560 0 3105825 99.883 1383680 2102 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-19 00:58:57] CVMFS is ok
[2025-12-19 00:58:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 00:58:57] Checking for apptainer binary...
[2025-12-19 00:58:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 00:58:57] Running /usr/bin/apptainer --version
[2025-12-19 00:58:57] apptainer version 1.3.2-1.el7
[2025-12-19 00:58:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 00:59:13] cg-vwn474.simple-grid.lan
[2025-12-19 00:59:13] apptainer works
[2025-12-19 00:59:13] Set ATHENA_PROC_NUMBER=8
[2025-12-19 00:59:13] Set ATHENA_CORE_NUMBER=8
[2025-12-19 00:59:13] Starting ATLAS job with PandaID=6933076697
[2025-12-19 00:59:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 04:59:13]  *** The last 200 lines of the pilot log: ***
[2025-12-19 04:59:13] 2025-12-19 03:58:17,979 | INFO     | time since job start (14140s) is within the limit (174528.0s)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,128 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-19 04:59:13] 2025-12-19 03:58:19,129 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-19 04:59:13] 2025-12-19 03:58:19,130 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6933076697/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,131 | INFO     | extracted standard info from prmon json
[2025-12-19 04:59:13] 2025-12-19 03:58:19,131 | INFO     | extracted standard memory fields from prmon json
[2025-12-19 04:59:13] 2025-12-19 03:58:19,131 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-19 04:59:13] 2025-12-19 03:58:19,132 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-19 04:59:13] 2025-12-19 03:58:19,132 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-19 04:59:13] 2025-12-19 03:58:19,136 | INFO     | fitting pss+swap vs Time
[2025-12-19 04:59:13] 2025-12-19 03:58:19,139 | INFO     | sum of square deviations: 3438620752.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,141 | INFO     | sum of deviations: 66902145036.00003
[2025-12-19 04:59:13] 2025-12-19 03:58:19,141 | INFO     | mean x: 1766109796.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,141 | INFO     | mean y: 2418921.9103139015
[2025-12-19 04:59:13] 2025-12-19 03:58:19,141 | INFO     | intersect: -34359187734.70316
[2025-12-19 04:59:13] 2025-12-19 03:58:19,142 | INFO     | chi2: 5.538331605640584
[2025-12-19 04:59:13] 2025-12-19 03:58:19,142 | INFO     | sum of square deviations: 3212467674.5
[2025-12-19 04:59:13] 2025-12-19 03:58:19,144 | INFO     | sum of deviations: 80000466721.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,144 | INFO     | mean x: 1766109643.5
[2025-12-19 04:59:13] 2025-12-19 03:58:19,144 | INFO     | mean y: 2427574.76146789
[2025-12-19 04:59:13] 2025-12-19 03:58:19,144 | INFO     | intersect: -43979212110.5156
[2025-12-19 04:59:13] 2025-12-19 03:58:19,144 | INFO     | chi2: 4.802776503600691
[2025-12-19 04:59:13] 2025-12-19 03:58:19,144 | INFO     | current chi2=4.802776503600691 (change=13.281167586476009 %)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,144 | INFO     | right removable region: 217
[2025-12-19 04:59:13] 2025-12-19 03:58:19,145 | INFO     | sum of square deviations: 3212467674.5
[2025-12-19 04:59:13] 2025-12-19 03:58:19,146 | INFO     | sum of deviations: -6296588390.500004
[2025-12-19 04:59:13] 2025-12-19 03:58:19,146 | INFO     | mean x: 1766109948.5
[2025-12-19 04:59:13] 2025-12-19 03:58:19,146 | INFO     | mean y: 2468223.0321100918
[2025-12-19 04:59:13] 2025-12-19 03:58:19,147 | INFO     | intersect: 3464127148.456936
[2025-12-19 04:59:13] 2025-12-19 03:58:19,147 | INFO     | chi2: 1.240973540635575
[2025-12-19 04:59:13] 2025-12-19 03:58:19,147 | INFO     | current chi2=1.240973540635575 (change=77.59300762396225 %)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,147 | INFO     | sum of square deviations: 2996454322.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,164 | INFO     | sum of deviations: -25645433767.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,164 | INFO     | mean x: 1766110101.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,164 | INFO     | mean y: 2481787.6572769955
[2025-12-19 04:59:13] 2025-12-19 03:58:19,164 | INFO     | intersect: 15117899796.163525
[2025-12-19 04:59:13] 2025-12-19 03:58:19,165 | INFO     | chi2: 0.8141938098945328
[2025-12-19 04:59:13] 2025-12-19 03:58:19,165 | INFO     | current chi2=0.8141938098945328 (change=34.39071960571081 %)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,165 | INFO     | sum of square deviations: 2790348132.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,167 | INFO     | sum of deviations: -26285467940.5
[2025-12-19 04:59:13] 2025-12-19 03:58:19,167 | INFO     | mean x: 1766110253.5
[2025-12-19 04:59:13] 2025-12-19 03:58:19,167 | INFO     | mean y: 2482250.168269231
[2025-12-19 04:59:13] 2025-12-19 03:58:19,167 | INFO     | intersect: 16639486757.017588
[2025-12-19 04:59:13] 2025-12-19 03:58:19,167 | INFO     | chi2: 0.8104297524248536
[2025-12-19 04:59:13] 2025-12-19 03:58:19,167 | INFO     | current chi2=0.8104297524248536 (change=0.46230484977118746 %)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,167 | INFO     | left removable region: 30
[2025-12-19 04:59:13] 2025-12-19 03:58:19,168 | INFO     | sum of square deviations: 2027639878.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,169 | INFO     | sum of deviations: -8735505305.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,169 | INFO     | mean x: 1766110528.0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,169 | INFO     | mean y: 2490316.588235294
[2025-12-19 04:59:13] 2025-12-19 03:58:19,169 | INFO     | intersect: 7611271369.848004
[2025-12-19 04:59:13] 2025-12-19 03:58:19,170 | INFO     | chi2: 0.01251273834962106
[2025-12-19 04:59:13] 2025-12-19 03:58:19,170 | INFO     | current memory leak: -4.31 B/s (using 187 data points, chi2=0.01)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,170 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,170 | INFO     | ..............................
[2025-12-19 04:59:13] 2025-12-19 03:58:19,170 | INFO     | . Timing measurements:
[2025-12-19 04:59:13] 2025-12-19 03:58:19,170 | INFO     | . get job = 0 s
[2025-12-19 04:59:13] 2025-12-19 03:58:19,171 | INFO     | . initial setup = 9 s
[2025-12-19 04:59:13] 2025-12-19 03:58:19,171 | INFO     | . payload setup = 123 s
[2025-12-19 04:59:13] 2025-12-19 03:58:19,171 | INFO     | . stage-in = 0 s
[2025-12-19 04:59:13] 2025-12-19 03:58:19,171 | INFO     | . payload execution = 13733 s
[2025-12-19 04:59:13] 2025-12-19 03:58:19,171 | INFO     | . stage-out = 3 s
[2025-12-19 04:59:13] 2025-12-19 03:58:19,171 | INFO     | . log creation = 1 s
[2025-12-19 04:59:13] 2025-12-19 03:58:19,171 | INFO     | ..............................
[2025-12-19 04:59:13] 2025-12-19 03:58:19,403 | INFO     | 
[2025-12-19 04:59:13] 2025-12-19 03:58:19,403 | INFO     | job summary report
[2025-12-19 04:59:13] 2025-12-19 03:58:19,403 | INFO     | --------------------------------------------------
[2025-12-19 04:59:13] 2025-12-19 03:58:19,403 | INFO     | PanDA job id: 6933076697
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | task id: 47886933
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | errors: (none)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | pilot state: finished 
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | transexitcode: 0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | exeerrorcode: 0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | exeerrordiag: 
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | exitcode: 0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | exitmsg: OK
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | cpuconsumptiontime: 52043 s
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | nevents: 400
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | neventsw: 0
[2025-12-19 04:59:13] 2025-12-19 03:58:19,404 | INFO     | pid: 19965
[2025-12-19 04:59:13] 2025-12-19 03:58:19,405 | INFO     | pgrp: 19965
[2025-12-19 04:59:13] 2025-12-19 03:58:19,405 | INFO     | corecount: 8
[2025-12-19 04:59:13] 2025-12-19 03:58:19,405 | INFO     | event service: False
[2025-12-19 04:59:13] 2025-12-19 03:58:19,405 | INFO     | sizes: {0: 2283743, 1: 2283998, 12: 2283998, 23: 2284026, 34: 2284054, 44: 2284082, 55: 2284238, 66: 2284266, 77: 2284294, 87: 2284350, 97: 2284640, 98: 2284948, 1
[2025-12-19 04:59:13] 2025-12-19 03:58:19,405 | INFO     | --------------------------------------------------
[2025-12-19 04:59:13] 2025-12-19 03:58:19,405 | INFO     | 
[2025-12-19 04:59:13] 2025-12-19 03:58:19,405 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-19 04:59:13] 2025-12-19 03:58:19,735 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,736 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,736 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,736 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,736 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,737 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,738 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,738 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,738 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 04:59:13] 2025-12-19 03:58:19,738 | INFO     | job 6933076697 has completed (purged errors)
[2025-12-19 04:59:13] 2025-12-19 03:58:19,738 | INFO     | overall cleanup function is called
[2025-12-19 04:59:13] 2025-12-19 03:58:20,746 | INFO     | --- collectZombieJob: --- 10, [19965]
[2025-12-19 04:59:13] 2025-12-19 03:58:20,746 | INFO     | zombie collector waiting for pid 19965
[2025-12-19 04:59:13] 2025-12-19 03:58:20,746 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 04:59:13] 2025-12-19 03:58:20,746 | INFO     | collected zombie processes
[2025-12-19 04:59:13] 2025-12-19 03:58:20,747 | INFO     | will attempt to kill all subprocesses of pid=19965
[2025-12-19 04:59:13] 2025-12-19 03:58:20,853 | INFO     | process IDs to be killed: [19965] (in reverse order)
[2025-12-19 04:59:13] 2025-12-19 03:58:21,356 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 04:59:13] 2025-12-19 03:58:21,356 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 04:59:13] 2025-12-19 03:58:21,359 | INFO     | did not find any defunct processes belonging to 19965
[2025-12-19 04:59:13] 2025-12-19 03:58:21,362 | INFO     | did not find any defunct processes belonging to 19965
[2025-12-19 04:59:13] 2025-12-19 03:58:21,362 | INFO     | ready for new job
[2025-12-19 04:59:13] 2025-12-19 03:58:21,362 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 04:59:13] 2025-12-19 03:58:21,364 | INFO     | ***************************************
[2025-12-19 04:59:13] 2025-12-19 03:58:21,364 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 04:59:13] 2025-12-19 03:58:21,364 | INFO     | ***************************************
[2025-12-19 04:59:13] 2025-12-19 03:58:21,364 | INFO     | 
[2025-12-19 04:59:13] 2025-12-19 03:58:21,365 | INFO     | pilot is running in a VM
[2025-12-19 04:59:13] 2025-12-19 03:58:21,365 | INFO     | architecture information:
[2025-12-19 04:59:13] 2025-12-19 03:58:21,372 | INFO     | executing command: cat /etc/os-release
[2025-12-19 04:59:13] 2025-12-19 03:58:21,564 | INFO     | cat /etc/os-release:
[2025-12-19 04:59:13] NAME="CentOS Linux"
[2025-12-19 04:59:13] VERSION="7 (Core)"
[2025-12-19 04:59:13] ID="centos"
[2025-12-19 04:59:13] ID_LIKE="rhel fedora"
[2025-12-19 04:59:13] VERSION_ID="7"
[2025-12-19 04:59:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 04:59:13] ANSI_COLOR="0;31"
[2025-12-19 04:59:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 04:59:13] HOME_URL="https://www.centos.org/"
[2025-12-19 04:59:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 04:59:13] 
[2025-12-19 04:59:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 04:59:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 04:59:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 04:59:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 04:59:13] 
[2025-12-19 04:59:13] 2025-12-19 03:58:21,565 | INFO     | ***************************************
[2025-12-19 04:59:13] 2025-12-19 03:58:22,068 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-19 04:59:13] 2025-12-19 03:58:22,134 | INFO     | sufficient remaining disk space (493771292672 B)
[2025-12-19 04:59:13] 2025-12-19 03:58:22,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 04:59:13] 2025-12-19 03:58:22,134 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 04:59:13] 2025-12-19 03:58:22,134 | INFO     | update_server=False
[2025-12-19 04:59:13] 2025-12-19 03:58:22,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 04:59:13] 2025-12-19 03:58:22,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 04:59:13] 2025-12-19 03:58:22,135 | INFO     | aborting loop
[2025-12-19 04:59:13] 2025-12-19 03:58:22,176 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 04:59:13] 2025-12-19 03:58:22,222 | INFO     | all data control threads have been joined
[2025-12-19 04:59:13] 2025-12-19 03:58:22,969 | INFO     | all payload control threads have been joined
[2025-12-19 04:59:13] 2025-12-19 03:58:23,009 | INFO     | all job control threads have been joined
[2025-12-19 04:59:13] 2025-12-19 03:58:23,140 | INFO     | [job] retrieve thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,141 | INFO     | [job] job monitor thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,231 | INFO     | [data] control thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,254 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 04:59:13] 2025-12-19 03:58:23,578 | INFO     | [payload] validate_post thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,680 | INFO     | [job] validate thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,681 | INFO     | [payload] failed_post thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,782 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,879 | INFO     | [data] copytool_in thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:23,975 | INFO     | [payload] control thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:24,015 | INFO     | [job] control thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:24,302 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:24,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 04:59:13] 2025-12-19 03:58:25,325 | INFO     | [job] queue monitor thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:25,466 | INFO     | [data] copytool_out thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:26,186 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 04:59:13] 2025-12-19 03:58:51,161 | INFO     | PID=13439 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-19 04:59:13] 2025-12-19 03:58:51,161 | INFO     | .. there are 9 such processes running
[2025-12-19 04:59:13] 2025-12-19 03:58:51,163 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 04:59:13] 2025-12-19 03:58:51,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 04:59:13] 2025-12-19 03:58:51,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 04:59:13] 2025-12-19 03:59:00,982 | INFO     | [monitor] cgroup control has ended
[2025-12-19 04:59:13] 2025-12-19 03:59:02,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666736674624)>', '<ExcThread(monitor, started 139666154055424)>']
[2025-12-19 04:59:13] 2025-12-19 03:59:03,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 04:59:13] 2025-12-19 03:59:03,233 | INFO     | [monitor] control thread has ended
[2025-12-19 04:59:13] 2025-12-19 03:59:07,789 | INFO     | all workflow threads have been joined
[2025-12-19 04:59:13] 2025-12-19 03:59:07,789 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 04:59:13] 2025-12-19 03:59:07,790 | INFO     | traces error code: 0
[2025-12-19 04:59:13] 2025-12-19 03:59:07,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 04:59:13] 2025-12-19 03:59:08,195 [wrapper] ==== pilot stdout END ====
[2025-12-19 04:59:13] 2025-12-19 03:59:08,285 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 04:59:13] 2025-12-19 03:59:08,393 [wrapper] pilotpid: 13439
[2025-12-19 04:59:13] 2025-12-19 03:59:08,517 [wrapper] Pilot exit status: 0
[2025-12-19 04:59:13] 2025-12-19 03:59:08,926 [wrapper] pandaids: 6933076697
[2025-12-19 04:59:13] 2025-12-19 03:59:09,871 [wrapper] cleanup supervisor_pilot 11444 13440
[2025-12-19 04:59:13] 2025-12-19 03:59:09,972 [wrapper] Test setup, not cleaning
[2025-12-19 04:59:13] 2025-12-19 03:59:10,068 [wrapper] apfmon messages muted
[2025-12-19 04:59:13] 2025-12-19 03:59:10,105 [wrapper] ==== wrapper stdout END ====
[2025-12-19 04:59:13] 2025-12-19 03:59:10,173 [wrapper] ==== wrapper stderr END ====
[2025-12-19 04:59:13]  *** Error codes and diagnostics ***
[2025-12-19 04:59:13]     "exeErrorCode": 0,
[2025-12-19 04:59:13]     "exeErrorDiag": "",
[2025-12-19 04:59:13]     "pilotErrorCode": 0,
[2025-12-19 04:59:13]     "pilotErrorDiag": "",
[2025-12-19 04:59:13]  *** Listing of results directory ***
[2025-12-19 04:59:13] total 346960
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc    579449 Dec 18 06:16 pilot3.tar.gz
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc      5112 Dec 18 06:19 queuedata.json
[2025-12-19 04:59:13] -rwx------. 1 boinc boinc     36322 Dec 18 06:19 runpilot2-wrapper.sh
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc       100 Dec 19 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 04:59:13] -rwxr-xr-x. 1 boinc boinc      7986 Dec 19 00:58 run_atlas
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc       105 Dec 19 00:58 job.xml
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc      6392 Dec 19 00:58 init_data.xml
[2025-12-19 04:59:13] -rw-r--r--. 2 boinc boinc 194201101 Dec 19 00:58 EVNT.47886929._000508.pool.root.1
[2025-12-19 04:59:13] -rw-r--r--. 2 boinc boinc     15847 Dec 19 00:58 start_atlas.sh
[2025-12-19 04:59:13] drwxrwx--x. 2 boinc boinc        68 Dec 19 00:58 shared
[2025-12-19 04:59:13] -rw-r--r--. 2 boinc boinc    592401 Dec 19 00:58 input.tar.gz
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc         0 Dec 19 00:58 boinc_lockfile
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc      2516 Dec 19 00:59 pandaJob.out
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc    988880 Dec 19 01:02 agis_schedconf.cvmfs.json
[2025-12-19 04:59:13] drwx------. 5 boinc boinc      4096 Dec 19 01:02 pilot3
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc 152489423 Dec 19 04:55 HITS.47886933._014118.pool.root.1
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc       530 Dec 19 04:55 boinc_task_state.xml
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc      1017 Dec 19 04:56 memory_monitor_summary.json
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc   1516240 Dec 19 04:56 agis_ddmendpoints.agis.ALL.json
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc    459162 Dec 19 04:56 log.47886933._014118.job.log.tgz.1
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc      7782 Dec 19 04:58 heartbeat.json
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc        28 Dec 19 04:58 wrapper_checkpoint.txt
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc      8192 Dec 19 04:58 boinc_mmap_file
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc        95 Dec 19 04:58 pilot_heartbeat.json
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc      4884 Dec 19 04:59 pilotlog.txt
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc   1889830 Dec 19 04:59 log.47886933._014118.job.log.1
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc       357 Dec 19 04:59 output.list
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc       620 Dec 19 04:59 runtime_log
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc   2365440 Dec 19 04:59 result.tar.gz
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc      8817 Dec 19 04:59 runtime_log.err
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc       656 Dec 19 04:59 3WqNDmZbLq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkYdKDmP4Qvgm.diag
[2025-12-19 04:59:13] -rw-r--r--. 1 boinc boinc     20755 Dec 19 04:59 stderr.txt
[2025-12-19 04:59:13] HITS file was successfully produced:
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc 152489423 Dec 19 04:55 shared/HITS.pool.root.1
[2025-12-19 04:59:13]  *** Contents of shared directory: ***
[2025-12-19 04:59:13] total 341476
[2025-12-19 04:59:13] -rw-r--r--. 2 boinc boinc 194201101 Dec 19 00:58 ATLAS.root_0
[2025-12-19 04:59:13] -rw-r--r--. 2 boinc boinc     15847 Dec 19 00:58 start_atlas.sh
[2025-12-19 04:59:13] -rw-r--r--. 2 boinc boinc    592401 Dec 19 00:58 input.tar.gz
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc 152489423 Dec 19 04:55 HITS.pool.root.1
[2025-12-19 04:59:13] -rw-------. 1 boinc boinc   2365440 Dec 19 04:59 result.tar.gz
04:59:15 (9633): run_atlas exited; CPU time 52216.005729
04:59:15 (9633): called boinc_finish(0)

</stderr_txt>
]]>

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