Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
00:30:15 (86571): wrapper (7.7.26015): starting
00:30:15 (86571): wrapper: running run_atlas (--nthreads 4)
[2025-12-19 00:30:15] Arguments: --nthreads 4
[2025-12-19 00:30:15] Threads: 4
[2025-12-19 00:30:15] Checking for CVMFS
[2025-12-19 00:30:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 00:30:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 00:30:15] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 00:30:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 00:30:16] 2.13.1.0 189701 7196 102276 154169 3 57 8004713 10240001 1822 130560 0 20768109 99.997 267584 249 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-19 00:30:16] CVMFS is ok
[2025-12-19 00:30:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 00:30:16] Checking for apptainer binary...
[2025-12-19 00:30:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 00:30:16] Running /usr/bin/apptainer --version
[2025-12-19 00:30:16] apptainer version 1.4.2
[2025-12-19 00:30:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 00:30:16] julianvlneu
[2025-12-19 00:30:16] apptainer works
[2025-12-19 00:30:16] Set ATHENA_PROC_NUMBER=4
[2025-12-19 00:30:16] Set ATHENA_CORE_NUMBER=4
[2025-12-19 00:30:16] Starting ATLAS job with PandaID=6933466131
[2025-12-19 00:30:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 01:22:49]  *** The last 200 lines of the pilot log: ***
[2025-12-19 01:22:49]  status_code=0
[2025-12-19 01:22:49]  storage_token=
[2025-12-19 01:22:49]  surl=/var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6933466131/log.47886933._015530.job.log.tgz.1
[2025-12-19 01:22:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/60/log.47886933._015530.job.log.tgz.1
[2025-12-19 01:22:49]  workdir=None
[2025-12-19 01:22:49] ]
[2025-12-19 01:22:49] 2025-12-19 00:22:09,972 | INFO     | transferring file log.47886933._015530.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6933466131/log.47886933._015530.job.log.tgz.1 to /var/li
[2025-12-19 01:22:49] 2025-12-19 00:22:09,972 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6933466131/log.47886933._015530.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-19 01:22:49] 2025-12-19 00:22:09,994 | INFO     | adding to output.list: log.47886933._015530.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/60/log.47886933._015530.job.log.tg
[2025-12-19 01:22:49] 2025-12-19 00:22:09,995 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-19 01:22:49] 2025-12-19 00:22:09,995 | INFO     | summary of transferred files:
[2025-12-19 01:22:49] 2025-12-19 00:22:09,995 | INFO     |  -- lfn=log.47886933._015530.job.log.tgz.1, status_code=0, status=transferred
[2025-12-19 01:22:49] 2025-12-19 00:22:09,996 | INFO     | stage-out finished correctly
[2025-12-19 01:22:49] 2025-12-19 00:22:10,070 | INFO     | time since job start (3101s) is within the limit (174528.0s)
[2025-12-19 01:22:49] 2025-12-19 00:22:10,315 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-19 01:22:49] 2025-12-19 00:22:11,450 | INFO     | monitor loop #239: job 0:6933466131 is in state 'finished'
[2025-12-19 01:22:49] 2025-12-19 00:22:11,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 01:22:49] 2025-12-19 00:22:12,076 | INFO     | time since job start (3103s) is within the limit (174528.0s)
[2025-12-19 01:22:49] 2025-12-19 00:22:12,289 | INFO     | job 6933466131 has state=finished
[2025-12-19 01:22:49] 2025-12-19 00:22:12,289 | INFO     | preparing for final server update for job 6933466131 in state='finished'
[2025-12-19 01:22:49] 2025-12-19 00:22:12,289 | INFO     | this job has now completed (state=finished)
[2025-12-19 01:22:49] 2025-12-19 00:22:12,289 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-19 01:22:49] 2025-12-19 00:22:12,289 | INFO     | log transfer has been attempted: DONE
[2025-12-19 01:22:49] 2025-12-19 00:22:12,289 | INFO     | job 6933466131 has finished - writing final server update
[2025-12-19 01:22:49] 2025-12-19 00:22:12,290 | INFO     | total number of processed events: 400 (read)
[2025-12-19 01:22:49] 2025-12-19 00:22:12,291 | INFO     | executing command: lscpu
[2025-12-19 01:22:49] 2025-12-19 00:22:12,313 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-19 01:22:49] 2025-12-19 00:22:13,955 | INFO     | monitor loop #240: job 0:6933466131 is in state 'finished'
[2025-12-19 01:22:49] 2025-12-19 00:22:13,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 01:22:49] 2025-12-19 00:22:14,082 | INFO     | time since job start (3105s) is within the limit (174528.0s)
[2025-12-19 01:22:49] 2025-12-19 00:22:16,088 | INFO     | time since job start (3107s) is within the limit (174528.0s)
[2025-12-19 01:22:49] 2025-12-19 00:22:16,460 | INFO     | monitor loop #241: job 0:6933466131 is in state 'finished'
[2025-12-19 01:22:49] 2025-12-19 00:22:16,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 01:22:49] 2025-12-19 00:22:17,247 | INFO     | PID=90426 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-19 01:22:49] 2025-12-19 00:22:17,247 | INFO     | .. there are 3 such processes running
[2025-12-19 01:22:49] 2025-12-19 00:22:17,632 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-19 01:22:49] 2025-12-19 00:22:17,633 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 4399.884000000001
[2025-12-19 01:22:49] 2025-12-19 00:22:17,634 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6933466131/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 01:22:49] 2025-12-19 00:22:17,635 | INFO     | extracted standard info from prmon json
[2025-12-19 01:22:49] 2025-12-19 00:22:17,635 | INFO     | extracted standard memory fields from prmon json
[2025-12-19 01:22:49] 2025-12-19 00:22:17,635 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-19 01:22:49] 2025-12-19 00:22:17,635 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-19 01:22:49] 2025-12-19 00:22:17,635 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | fitting pss+swap vs Time
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | sum of square deviations: 26400495.0
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | sum of deviations: -4165669869.9999995
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | mean x: 1766102274.5
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | mean y: 2512902.6818181816
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | intersect: 278671493625.3205
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | chi2: 0.026743630430673095
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | current memory leak: -157.79 B/s (using 44 data points, chi2=0.03)
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | could have reported an average CPU frequency of 4399 MHz (5 samples)
[2025-12-19 01:22:49] 2025-12-19 00:22:17,636 | INFO     | ..............................
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | . Timing measurements:
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | . get job = 0 s
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | . initial setup = 1 s
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | . payload setup = 7 s
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | . stage-in = 0 s
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | . payload execution = 3073 s
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | . stage-out = 0 s
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | . log creation = 0 s
[2025-12-19 01:22:49] 2025-12-19 00:22:17,637 | INFO     | ..............................
[2025-12-19 01:22:49] 2025-12-19 00:22:17,997 | INFO     | 
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | job summary report
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | --------------------------------------------------
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | PanDA job id: 6933466131
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | task id: 47886933
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | errors: (none)
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | pilot state: finished 
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | transexitcode: 0
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | exeerrorcode: 0
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | exeerrordiag: 
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | exitcode: 0
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | exitmsg: OK
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | cpuconsumptiontime: 11386 s
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | nevents: 400
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | neventsw: 0
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | pid: 97061
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | pgrp: 97061
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | corecount: 4
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | event service: False
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | sizes: {0: 2283983, 6: 2284245, 11: 2284273, 3084: 2309665, 3085: 2318747, 3093: 2318917}
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | --------------------------------------------------
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | 
[2025-12-19 01:22:49] 2025-12-19 00:22:17,998 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/2
[2025-12-19 01:22:49] 2025-12-19 00:22:18,018 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,019 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 01:22:49] 2025-12-19 00:22:18,020 | INFO     | job 6933466131 has completed (purged errors)
[2025-12-19 01:22:49] 2025-12-19 00:22:18,020 | INFO     | overall cleanup function is called
[2025-12-19 01:22:49] 2025-12-19 00:22:19,027 | INFO     | --- collectZombieJob: --- 10, [97061]
[2025-12-19 01:22:49] 2025-12-19 00:22:19,027 | INFO     | zombie collector waiting for pid 97061
[2025-12-19 01:22:49] 2025-12-19 00:22:19,027 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 01:22:49] 2025-12-19 00:22:19,027 | INFO     | collected zombie processes
[2025-12-19 01:22:49] 2025-12-19 00:22:19,027 | INFO     | will attempt to kill all subprocesses of pid=97061
[2025-12-19 01:22:49] 2025-12-19 00:22:19,136 | INFO     | process IDs to be killed: [97061] (in reverse order)
[2025-12-19 01:22:49] 2025-12-19 00:22:19,196 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 01:22:49] 2025-12-19 00:22:19,197 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 01:22:49] 2025-12-19 00:22:19,201 | INFO     | did not find any defunct processes belonging to 97061
[2025-12-19 01:22:49] 2025-12-19 00:22:19,204 | INFO     | did not find any defunct processes belonging to 97061
[2025-12-19 01:22:49] 2025-12-19 00:22:19,204 | INFO     | ready for new job
[2025-12-19 01:22:49] 2025-12-19 00:22:19,204 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 01:22:49] 2025-12-19 00:22:19,206 | INFO     | ***************************************
[2025-12-19 01:22:49] 2025-12-19 00:22:19,206 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 01:22:49] 2025-12-19 00:22:19,206 | INFO     | ***************************************
[2025-12-19 01:22:49] 2025-12-19 00:22:19,206 | INFO     | 
[2025-12-19 01:22:49] 2025-12-19 00:22:19,206 | INFO     | pilot is running in a VM
[2025-12-19 01:22:49] 2025-12-19 00:22:19,206 | INFO     | architecture information:
[2025-12-19 01:22:49] 2025-12-19 00:22:19,207 | INFO     | executing command: cat /etc/os-release
[2025-12-19 01:22:49] 2025-12-19 00:22:19,221 | INFO     | cat /etc/os-release:
[2025-12-19 01:22:49] NAME="CentOS Linux"
[2025-12-19 01:22:49] VERSION="7 (Core)"
[2025-12-19 01:22:49] ID="centos"
[2025-12-19 01:22:49] ID_LIKE="rhel fedora"
[2025-12-19 01:22:49] VERSION_ID="7"
[2025-12-19 01:22:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 01:22:49] ANSI_COLOR="0;31"
[2025-12-19 01:22:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 01:22:49] HOME_URL="https://www.centos.org/"
[2025-12-19 01:22:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 01:22:49] 
[2025-12-19 01:22:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 01:22:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 01:22:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 01:22:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 01:22:49] 
[2025-12-19 01:22:49] 2025-12-19 00:22:19,222 | INFO     | ***************************************
[2025-12-19 01:22:49] 2025-12-19 00:22:19,725 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/2
[2025-12-19 01:22:49] 2025-12-19 00:22:19,741 | INFO     | sufficient remaining disk space (146259574784 B)
[2025-12-19 01:22:49] 2025-12-19 00:22:19,741 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 01:22:49] 2025-12-19 00:22:19,742 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 01:22:49] 2025-12-19 00:22:19,742 | INFO     | update_server=False
[2025-12-19 01:22:49] 2025-12-19 00:22:19,742 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 01:22:49] 2025-12-19 00:22:19,970 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 01:22:49] 2025-12-19 00:22:19,970 | INFO     | aborting loop
[2025-12-19 01:22:49] 2025-12-19 00:22:20,091 | INFO     | all payload control threads have been joined
[2025-12-19 01:22:49] 2025-12-19 00:22:20,291 | INFO     | all job control threads have been joined
[2025-12-19 01:22:49] 2025-12-19 00:22:20,292 | INFO     | all data control threads have been joined
[2025-12-19 01:22:49] 2025-12-19 00:22:20,542 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 01:22:49] 2025-12-19 00:22:20,748 | INFO     | [job] retrieve thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:20,849 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 01:22:49] 2025-12-19 00:22:20,975 | INFO     | [job] job monitor thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:21,096 | INFO     | [payload] control thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:21,297 | INFO     | [job] control thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:21,297 | INFO     | [data] control thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:21,346 | INFO     | [payload] validate_post thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:21,363 | INFO     | [data] copytool_in thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:21,671 | INFO     | [payload] failed_post thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:21,986 | INFO     | [job] validate thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:22,030 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:22,089 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:22,121 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:22,549 | INFO     | [data] copytool_out thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:22,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 01:22:49] 2025-12-19 00:22:23,682 | INFO     | [job] queue monitor thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:24,857 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:30,360 | INFO     | job.realtimelogging is not enabled
[2025-12-19 01:22:49] 2025-12-19 00:22:31,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 01:22:49] 2025-12-19 00:22:32,428 | INFO     | [monitor] cgroup control has ended
[2025-12-19 01:22:49] 2025-12-19 00:22:34,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123768185771840)>', '<ExcThread(monitor, started 123766797498112)>']
[2025-12-19 01:22:49] 2025-12-19 00:22:39,066 | INFO     | all workflow threads have been joined
[2025-12-19 01:22:49] 2025-12-19 00:22:39,066 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 01:22:49] 2025-12-19 00:22:39,066 | INFO     | traces error code: 0
[2025-12-19 01:22:49] 2025-12-19 00:22:39,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 01:22:49] 2025-12-19 00:22:49,451 | INFO     | PID=90426 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-19 01:22:49] 2025-12-19 00:22:49,451 | INFO     | .. there are 3 such processes running
[2025-12-19 01:22:49] 2025-12-19 00:22:49,451 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 01:22:49] 2025-12-19 00:22:49,451 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 01:22:49] 2025-12-19 00:22:49,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 01:22:49] 2025-12-19 00:22:49,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 01:22:49] 2025-12-19 00:22:49,451 | CRITICAL | thread 'MainThread' is not alive
[2025-12-19 01:22:49] 2025-12-19 00:22:49,451 | INFO     | [monitor] control thread has ended
[2025-12-19 01:22:49] 2025-12-19 00:22:49,527 [wrapper] ==== pilot stdout END ====
[2025-12-19 01:22:49] 2025-12-19 00:22:49,532 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 01:22:49] 2025-12-19 00:22:49,537 [wrapper] pilotpid: 90426
[2025-12-19 01:22:49] 2025-12-19 00:22:49,541 [wrapper] Pilot exit status: 0
[2025-12-19 01:22:49] 2025-12-19 00:22:49,559 [wrapper] pandaids: 6933466131
[2025-12-19 01:22:49] 2025-12-19 00:22:49,603 [wrapper] cleanup supervisor_pilot  149434 90427
[2025-12-19 01:22:49] 2025-12-19 00:22:49,608 [wrapper] Test setup, not cleaning
[2025-12-19 01:22:49] 2025-12-19 00:22:49,613 [wrapper] apfmon messages muted
[2025-12-19 01:22:49] 2025-12-19 00:22:49,617 [wrapper] ==== wrapper stdout END ====
[2025-12-19 01:22:49] 2025-12-19 00:22:49,622 [wrapper] ==== wrapper stderr END ====
[2025-12-19 01:22:49]  *** Error codes and diagnostics ***
[2025-12-19 01:22:49]     "exeErrorCode": 0,
[2025-12-19 01:22:49]     "exeErrorDiag": "",
[2025-12-19 01:22:49]     "pilotErrorCode": 0,
[2025-12-19 01:22:49]     "pilotErrorDiag": "",
[2025-12-19 01:22:49]  *** Listing of results directory ***
[2025-12-19 01:22:49] insgesamt 338212
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc    579449 Dez 18 11:44 pilot3.tar.gz
[2025-12-19 01:22:49] -rwx------ 1 yeti boinc     36322 Dez 18 11:47 runpilot2-wrapper.sh
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc      5112 Dez 18 11:50 queuedata.json
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc       100 Dez 19 00:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 01:22:49] -rwxr-xr-x 1 yeti boinc      7986 Dez 19 00:30 run_atlas
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc       105 Dez 19 00:30 job.xml
[2025-12-19 01:22:49] -rw-r--r-- 2 yeti boinc 192951444 Dez 19 00:30 EVNT.47886929._000642.pool.root.1
[2025-12-19 01:22:49] -rw-r--r-- 2 yeti boinc     15847 Dez 19 00:30 start_atlas.sh
[2025-12-19 01:22:49] drwxrwx--x 2 yeti boinc      4096 Dez 19 00:30 shared
[2025-12-19 01:22:49] -rw-r--r-- 2 yeti boinc    592405 Dez 19 00:30 input.tar.gz
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc      6730 Dez 19 00:30 init_data.xml
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc         0 Dez 19 00:30 boinc_setup_complete
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc         0 Dez 19 00:30 boinc_lockfile
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc      2515 Dez 19 00:30 pandaJob.out
[2025-12-19 01:22:49] -rw------- 1 yeti boinc        52 Dez 19 00:30 setup.sh.local
[2025-12-19 01:22:49] -rw------- 1 yeti boinc    988880 Dez 19 00:30 agis_schedconf.cvmfs.json
[2025-12-19 01:22:49] -rw------- 1 yeti boinc   1516240 Dez 19 00:30 agis_ddmendpoints.agis.ALL.json
[2025-12-19 01:22:49] drwx------ 5 yeti boinc      4096 Dez 19 00:30 pilot3
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc       529 Dez 19 01:21 boinc_task_state.xml
[2025-12-19 01:22:49] -rw------- 1 yeti boinc 147986968 Dez 19 01:21 HITS.47886933._015530.pool.root.1
[2025-12-19 01:22:49] -rw------- 1 yeti boinc        95 Dez 19 01:21 pilot_heartbeat.json
[2025-12-19 01:22:49] -rw------- 1 yeti boinc      1021 Dez 19 01:22 memory_monitor_summary.json
[2025-12-19 01:22:49] -rw------- 1 yeti boinc    249564 Dez 19 01:22 log.47886933._015530.job.log.tgz.1
[2025-12-19 01:22:49] -rw------- 1 yeti boinc      7743 Dez 19 01:22 heartbeat.json
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc      8192 Dez 19 01:22 boinc_mmap_file
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc        27 Dez 19 01:22 wrapper_checkpoint.txt
[2025-12-19 01:22:49] -rw------- 1 yeti boinc       890 Dez 19 01:22 pilotlog.txt
[2025-12-19 01:22:49] -rw------- 1 yeti boinc    487665 Dez 19 01:22 log.47886933._015530.job.log.1
[2025-12-19 01:22:49] -rw------- 1 yeti boinc       357 Dez 19 01:22 output.list
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc       620 Dez 19 01:22 runtime_log
[2025-12-19 01:22:49] -rw------- 1 yeti boinc    757760 Dez 19 01:22 result.tar.gz
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc      9557 Dez 19 01:22 runtime_log.err
[2025-12-19 01:22:49] -rw------- 1 yeti boinc       640 Dez 19 01:22 Qd2NDm5iQq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKGZKDmM4Wcvn.diag
[2025-12-19 01:22:49] -rw-r--r-- 1 yeti boinc     21855 Dez 19 01:22 stderr.txt
[2025-12-19 01:22:49] HITS file was successfully produced:
[2025-12-19 01:22:49] -rw------- 1 yeti boinc 147986968 Dez 19 01:21 shared/HITS.pool.root.1
[2025-12-19 01:22:49]  *** Contents of shared directory: ***
[2025-12-19 01:22:49] insgesamt 334296
[2025-12-19 01:22:49] -rw-r--r-- 2 yeti boinc 192951444 Dez 19 00:30 ATLAS.root_0
[2025-12-19 01:22:49] -rw-r--r-- 2 yeti boinc     15847 Dez 19 00:30 start_atlas.sh
[2025-12-19 01:22:49] -rw-r--r-- 2 yeti boinc    592405 Dez 19 00:30 input.tar.gz
[2025-12-19 01:22:49] -rw------- 1 yeti boinc 147986968 Dez 19 01:21 HITS.pool.root.1
[2025-12-19 01:22:49] -rw------- 1 yeti boinc    757760 Dez 19 01:22 result.tar.gz
01:22:51 (86571): run_atlas exited; CPU time 11465.097811
01:22:51 (86571): called boinc_finish(0)

</stderr_txt>
]]>

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