Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
00:49:39 (128518): wrapper (7.7.26015): starting
00:49:39 (128518): wrapper: running run_atlas (--nthreads 4)
[2025-12-19 00:49:39] Arguments: --nthreads 4
[2025-12-19 00:49:39] Threads: 4
[2025-12-19 00:49:39] Checking for CVMFS
[2025-12-19 00:49:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 00:49:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 00:49:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 00:49:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 00:49:40] 2.13.1.0 189701 7215 101532 154169 0 188 8004958 10240001 1778 130560 0 20879532 99.997 267587 249 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-19 00:49:40] CVMFS is ok
[2025-12-19 00:49:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 00:49:40] Checking for apptainer binary...
[2025-12-19 00:49:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 00:49:40] Running /usr/bin/apptainer --version
[2025-12-19 00:49:40] apptainer version 1.4.2
[2025-12-19 00:49:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 00:49:40] julianvlneu
[2025-12-19 00:49:40] apptainer works
[2025-12-19 00:49:40] Set ATHENA_PROC_NUMBER=4
[2025-12-19 00:49:40] Set ATHENA_CORE_NUMBER=4
[2025-12-19 00:49:40] Starting ATLAS job with PandaID=6933076676
[2025-12-19 00:49:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 01:42:03]  *** The last 200 lines of the pilot log: ***
[2025-12-19 01:42:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-19 01:42:03]  replicas=None
[2025-12-19 01:42:03]  scope=mc23_13p6TeV
[2025-12-19 01:42:03]  status=None
[2025-12-19 01:42:03]  status_code=0
[2025-12-19 01:42:03]  storage_token=
[2025-12-19 01:42:03]  surl=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6933076676/log.47886933._014097.job.log.tgz.1
[2025-12-19 01:42:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/57/log.47886933._014097.job.log.tgz.1
[2025-12-19 01:42:03]  workdir=None
[2025-12-19 01:42:03] ]
[2025-12-19 01:42:03] 2025-12-19 00:41:14,898 | INFO     | transferring file log.47886933._014097.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6933076676/log.47886933._014097.job.log.tgz.1 to /var/li
[2025-12-19 01:42:03] 2025-12-19 00:41:14,898 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6933076676/log.47886933._014097.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-19 01:42:03] 2025-12-19 00:41:14,918 | INFO     | adding to output.list: log.47886933._014097.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/57/log.47886933._014097.job.log.tg
[2025-12-19 01:42:03] 2025-12-19 00:41:14,919 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-19 01:42:03] 2025-12-19 00:41:14,919 | INFO     | summary of transferred files:
[2025-12-19 01:42:03] 2025-12-19 00:41:14,920 | INFO     |  -- lfn=log.47886933._014097.job.log.tgz.1, status_code=0, status=transferred
[2025-12-19 01:42:03] 2025-12-19 00:41:14,920 | INFO     | stage-out finished correctly
[2025-12-19 01:42:03] 2025-12-19 00:41:15,433 | INFO     | time since job start (3082s) is within the limit (174528.0s)
[2025-12-19 01:42:03] 2025-12-19 00:41:16,248 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-19 01:42:03] 2025-12-19 00:41:16,272 | INFO     | job 6933076676 has state=finished
[2025-12-19 01:42:03] 2025-12-19 00:41:16,272 | INFO     | preparing for final server update for job 6933076676 in state='finished'
[2025-12-19 01:42:03] 2025-12-19 00:41:16,273 | INFO     | this job has now completed (state=finished)
[2025-12-19 01:42:03] 2025-12-19 00:41:16,273 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-19 01:42:03] 2025-12-19 00:41:16,273 | INFO     | log transfer has been attempted: DONE
[2025-12-19 01:42:03] 2025-12-19 00:41:16,273 | INFO     | job 6933076676 has finished - writing final server update
[2025-12-19 01:42:03] 2025-12-19 00:41:16,273 | INFO     | total number of processed events: 400 (read)
[2025-12-19 01:42:03] 2025-12-19 00:41:16,273 | INFO     | executing command: lscpu
[2025-12-19 01:42:03] 2025-12-19 00:41:16,294 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-19 01:42:03] 2025-12-19 00:41:17,114 | INFO     | monitor loop #237: job 0:6933076676 is in state 'finished'
[2025-12-19 01:42:03] 2025-12-19 00:41:17,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 01:42:03] 2025-12-19 00:41:17,440 | INFO     | time since job start (3084s) is within the limit (174528.0s)
[2025-12-19 01:42:03] 2025-12-19 00:41:18,588 | INFO     | PID=132362 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-19 01:42:03] 2025-12-19 00:41:18,589 | INFO     | .. there are 3 such processes running
[2025-12-19 01:42:03] 2025-12-19 00:41:19,589 | INFO     | time since job start (3086s) is within the limit (174528.0s)
[2025-12-19 01:42:03] 2025-12-19 00:41:19,619 | INFO     | monitor loop #238: job 0:6933076676 is in state 'finished'
[2025-12-19 01:42:03] 2025-12-19 00:41:19,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 01:42:03] 2025-12-19 00:41:21,271 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-19 01:42:03] 2025-12-19 00:41:21,271 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 4399.884000000001
[2025-12-19 01:42:03] 2025-12-19 00:41:21,273 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6933076676/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 01:42:03] 2025-12-19 00:41:21,273 | INFO     | extracted standard info from prmon json
[2025-12-19 01:42:03] 2025-12-19 00:41:21,273 | INFO     | extracted standard memory fields from prmon json
[2025-12-19 01:42:03] 2025-12-19 00:41:21,273 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-19 01:42:03] 2025-12-19 00:41:21,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-19 01:42:03] 2025-12-19 00:41:21,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | fitting pss+swap vs Time
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | sum of square deviations: 24640462.0
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | sum of deviations: -1660400357.9999998
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | mean x: 1766103407.0
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | mean y: 2370096.511627907
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | intersect: 119011450739.87859
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | chi2: 0.009481634806897534
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | current memory leak: -67.39 B/s (using 43 data points, chi2=0.01)
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | could have reported an average CPU frequency of 4399 MHz (5 samples)
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | ..............................
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | . Timing measurements:
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | . get job = 0 s
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | . initial setup = 1 s
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | . payload setup = 7 s
[2025-12-19 01:42:03] 2025-12-19 00:41:21,274 | INFO     | . stage-in = 0 s
[2025-12-19 01:42:03] 2025-12-19 00:41:21,275 | INFO     | . payload execution = 3055 s
[2025-12-19 01:42:03] 2025-12-19 00:41:21,275 | INFO     | . stage-out = 0 s
[2025-12-19 01:42:03] 2025-12-19 00:41:21,275 | INFO     | . log creation = 0 s
[2025-12-19 01:42:03] 2025-12-19 00:41:21,275 | INFO     | ..............................
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | 
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | job summary report
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | --------------------------------------------------
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | PanDA job id: 6933076676
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | task id: 47886933
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | errors: (none)
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | pilot state: finished 
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | transexitcode: 0
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | exeerrorcode: 0
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | exeerrordiag: 
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | exitcode: 0
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | exitmsg: OK
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | cpuconsumptiontime: 11367 s
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | nevents: 400
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | neventsw: 0
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | pid: 138996
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | pgrp: 138996
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | corecount: 4
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | event service: False
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | sizes: {0: 2283983, 5: 2284245, 11: 2284301, 3065: 2309639, 3066: 2318720, 3067: 2318720, 3072: 2319074}
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | --------------------------------------------------
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | 
[2025-12-19 01:42:03] 2025-12-19 00:41:21,301 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2025-12-19 01:42:03] 2025-12-19 00:41:21,322 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,322 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,322 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,322 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,322 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | job 6933076676 has completed (purged errors)
[2025-12-19 01:42:03] 2025-12-19 00:41:21,323 | INFO     | overall cleanup function is called
[2025-12-19 01:42:03] 2025-12-19 00:41:22,330 | INFO     | --- collectZombieJob: --- 10, [138996]
[2025-12-19 01:42:03] 2025-12-19 00:41:22,330 | INFO     | zombie collector waiting for pid 138996
[2025-12-19 01:42:03] 2025-12-19 00:41:22,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 01:42:03] 2025-12-19 00:41:22,330 | INFO     | collected zombie processes
[2025-12-19 01:42:03] 2025-12-19 00:41:22,330 | INFO     | will attempt to kill all subprocesses of pid=138996
[2025-12-19 01:42:03] 2025-12-19 00:41:22,435 | INFO     | process IDs to be killed: [138996] (in reverse order)
[2025-12-19 01:42:03] 2025-12-19 00:41:22,493 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 01:42:03] 2025-12-19 00:41:22,494 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 01:42:03] 2025-12-19 00:41:22,497 | INFO     | did not find any defunct processes belonging to 138996
[2025-12-19 01:42:03] 2025-12-19 00:41:22,500 | INFO     | did not find any defunct processes belonging to 138996
[2025-12-19 01:42:03] 2025-12-19 00:41:22,501 | INFO     | ready for new job
[2025-12-19 01:42:03] 2025-12-19 00:41:22,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 01:42:03] 2025-12-19 00:41:22,502 | INFO     | ***************************************
[2025-12-19 01:42:03] 2025-12-19 00:41:22,502 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 01:42:03] 2025-12-19 00:41:22,502 | INFO     | ***************************************
[2025-12-19 01:42:03] 2025-12-19 00:41:22,502 | INFO     | 
[2025-12-19 01:42:03] 2025-12-19 00:41:22,503 | INFO     | pilot is running in a VM
[2025-12-19 01:42:03] 2025-12-19 00:41:22,503 | INFO     | architecture information:
[2025-12-19 01:42:03] 2025-12-19 00:41:22,503 | INFO     | executing command: cat /etc/os-release
[2025-12-19 01:42:03] 2025-12-19 00:41:22,516 | INFO     | cat /etc/os-release:
[2025-12-19 01:42:03] NAME="CentOS Linux"
[2025-12-19 01:42:03] VERSION="7 (Core)"
[2025-12-19 01:42:03] ID="centos"
[2025-12-19 01:42:03] ID_LIKE="rhel fedora"
[2025-12-19 01:42:03] VERSION_ID="7"
[2025-12-19 01:42:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 01:42:03] ANSI_COLOR="0;31"
[2025-12-19 01:42:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 01:42:03] HOME_URL="https://www.centos.org/"
[2025-12-19 01:42:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 01:42:03] 
[2025-12-19 01:42:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 01:42:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 01:42:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 01:42:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 01:42:03] 
[2025-12-19 01:42:03] 2025-12-19 00:41:22,517 | INFO     | ***************************************
[2025-12-19 01:42:03] 2025-12-19 00:41:23,020 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2025-12-19 01:42:03] 2025-12-19 00:41:23,036 | INFO     | sufficient remaining disk space (146387501056 B)
[2025-12-19 01:42:03] 2025-12-19 00:41:23,037 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 01:42:03] 2025-12-19 00:41:23,037 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 01:42:03] 2025-12-19 00:41:23,037 | INFO     | update_server=False
[2025-12-19 01:42:03] 2025-12-19 00:41:23,037 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 01:42:03] 2025-12-19 00:41:23,037 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 01:42:03] 2025-12-19 00:41:23,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 01:42:03] 2025-12-19 00:41:23,038 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 01:42:03] 2025-12-19 00:41:23,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 01:42:03] 2025-12-19 00:41:23,128 | INFO     | aborting loop
[2025-12-19 01:42:03] 2025-12-19 00:41:23,233 | INFO     | all data control threads have been joined
[2025-12-19 01:42:03] 2025-12-19 00:41:23,691 | INFO     | all job control threads have been joined
[2025-12-19 01:42:03] 2025-12-19 00:41:24,043 | INFO     | [job] retrieve thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,043 | INFO     | [job] queue monitor thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,044 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,062 | INFO     | [data] copytool_in thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,134 | INFO     | [job] job monitor thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,239 | INFO     | [data] control thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,515 | INFO     | all payload control threads have been joined
[2025-12-19 01:42:03] 2025-12-19 00:41:24,697 | INFO     | [job] control thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,753 | INFO     | [payload] failed_post thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,849 | INFO     | [job] validate thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,926 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:24,990 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:25,044 | INFO     | [data] copytool_out thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:25,262 | INFO     | [payload] validate_post thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:25,520 | INFO     | [payload] control thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:27,044 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:33,299 | INFO     | job.realtimelogging is not enabled
[2025-12-19 01:42:03] 2025-12-19 00:41:34,305 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 01:42:03] 2025-12-19 00:41:52,795 | INFO     | PID=132362 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-19 01:42:03] 2025-12-19 00:41:52,796 | INFO     | .. there are 3 such processes running
[2025-12-19 01:42:03] 2025-12-19 00:41:52,796 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 01:42:03] 2025-12-19 00:41:52,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 01:42:03] 2025-12-19 00:41:52,796 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 01:42:03] 2025-12-19 00:41:56,711 | INFO     | [monitor] cgroup control has ended
[2025-12-19 01:42:03] 2025-12-19 00:41:57,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136067790739264)>', '<ExcThread(monitor, started 136067164395264)>']
[2025-12-19 01:42:03] 2025-12-19 00:41:57,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 01:42:03] 2025-12-19 00:41:57,822 | INFO     | [monitor] control thread has ended
[2025-12-19 01:42:03] 2025-12-19 00:42:02,761 | INFO     | all workflow threads have been joined
[2025-12-19 01:42:03] 2025-12-19 00:42:02,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 01:42:03] 2025-12-19 00:42:02,762 | INFO     | traces error code: 0
[2025-12-19 01:42:03] 2025-12-19 00:42:02,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 01:42:03] 2025-12-19 00:42:02,827 [wrapper] ==== pilot stdout END ====
[2025-12-19 01:42:03] 2025-12-19 00:42:02,831 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 01:42:03] 2025-12-19 00:42:02,836 [wrapper] pilotpid: 132362
[2025-12-19 01:42:03] 2025-12-19 00:42:02,840 [wrapper] Pilot exit status: 0
[2025-12-19 01:42:03] 2025-12-19 00:42:02,856 [wrapper] pandaids: 6933076676
[2025-12-19 01:42:03] 2025-12-19 00:42:02,899 [wrapper] cleanup supervisor_pilot  174368 132363
[2025-12-19 01:42:03] 2025-12-19 00:42:02,904 [wrapper] Test setup, not cleaning
[2025-12-19 01:42:03] 2025-12-19 00:42:02,909 [wrapper] apfmon messages muted
[2025-12-19 01:42:03] 2025-12-19 00:42:02,913 [wrapper] ==== wrapper stdout END ====
[2025-12-19 01:42:03] 2025-12-19 00:42:02,917 [wrapper] ==== wrapper stderr END ====
[2025-12-19 01:42:03]  *** Error codes and diagnostics ***
[2025-12-19 01:42:03]     "exeErrorCode": 0,
[2025-12-19 01:42:03]     "exeErrorDiag": "",
[2025-12-19 01:42:03]     "pilotErrorCode": 0,
[2025-12-19 01:42:03]     "pilotErrorDiag": "",
[2025-12-19 01:42:03]  *** Listing of results directory ***
[2025-12-19 01:42:03] insgesamt 335052
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc      5112 Dez 18 06:16 queuedata.json
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc    579449 Dez 18 06:16 pilot3.tar.gz
[2025-12-19 01:42:03] -rwx------ 1 yeti boinc     36322 Dez 18 06:16 runpilot2-wrapper.sh
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc       100 Dez 19 00:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 01:42:03] -rwxr-xr-x 1 yeti boinc      7986 Dez 19 00:49 run_atlas
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc       105 Dez 19 00:49 job.xml
[2025-12-19 01:42:03] -rw-r--r-- 2 yeti boinc 192129346 Dez 19 00:49 EVNT.47886929._000507.pool.root.1
[2025-12-19 01:42:03] -rw-r--r-- 2 yeti boinc     15847 Dez 19 00:49 start_atlas.sh
[2025-12-19 01:42:03] drwxrwx--x 2 yeti boinc      4096 Dez 19 00:49 shared
[2025-12-19 01:42:03] -rw-r--r-- 2 yeti boinc    592400 Dez 19 00:49 input.tar.gz
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc      6730 Dez 19 00:49 init_data.xml
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc         0 Dez 19 00:49 boinc_setup_complete
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc         0 Dez 19 00:49 boinc_lockfile
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc      2515 Dez 19 00:49 pandaJob.out
[2025-12-19 01:42:03] -rw------- 1 yeti boinc        52 Dez 19 00:49 setup.sh.local
[2025-12-19 01:42:03] -rw------- 1 yeti boinc    988880 Dez 19 00:49 agis_schedconf.cvmfs.json
[2025-12-19 01:42:03] -rw------- 1 yeti boinc   1516240 Dez 19 00:49 agis_ddmendpoints.agis.ALL.json
[2025-12-19 01:42:03] drwx------ 5 yeti boinc      4096 Dez 19 00:49 pilot3
[2025-12-19 01:42:03] -rw------- 1 yeti boinc 145565982 Dez 19 01:40 HITS.47886933._014097.pool.root.1
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc       529 Dez 19 01:40 boinc_task_state.xml
[2025-12-19 01:42:03] -rw------- 1 yeti boinc      1033 Dez 19 01:41 memory_monitor_summary.json
[2025-12-19 01:42:03] -rw------- 1 yeti boinc    256475 Dez 19 01:41 log.47886933._014097.job.log.tgz.1
[2025-12-19 01:42:03] -rw------- 1 yeti boinc        95 Dez 19 01:41 pilot_heartbeat.json
[2025-12-19 01:42:03] -rw------- 1 yeti boinc      7735 Dez 19 01:41 heartbeat.json
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc      8192 Dez 19 01:42 boinc_mmap_file
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc        27 Dez 19 01:42 wrapper_checkpoint.txt
[2025-12-19 01:42:03] -rw------- 1 yeti boinc      4971 Dez 19 01:42 pilotlog.txt
[2025-12-19 01:42:03] -rw------- 1 yeti boinc    484339 Dez 19 01:42 log.47886933._014097.job.log.1
[2025-12-19 01:42:03] -rw------- 1 yeti boinc       357 Dez 19 01:42 output.list
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc       620 Dez 19 01:42 runtime_log
[2025-12-19 01:42:03] -rw------- 1 yeti boinc    757760 Dez 19 01:42 result.tar.gz
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc      9557 Dez 19 01:42 runtime_log.err
[2025-12-19 01:42:03] -rw------- 1 yeti boinc       639 Dez 19 01:42 Pb2LDmUYLq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyiYKDmltzkSn.diag
[2025-12-19 01:42:03] -rw-r--r-- 1 yeti boinc     21678 Dez 19 01:42 stderr.txt
[2025-12-19 01:42:03] HITS file was successfully produced:
[2025-12-19 01:42:03] -rw------- 1 yeti boinc 145565982 Dez 19 01:40 shared/HITS.pool.root.1
[2025-12-19 01:42:03]  *** Contents of shared directory: ***
[2025-12-19 01:42:03] insgesamt 331128
[2025-12-19 01:42:03] -rw-r--r-- 2 yeti boinc 192129346 Dez 19 00:49 ATLAS.root_0
[2025-12-19 01:42:03] -rw-r--r-- 2 yeti boinc     15847 Dez 19 00:49 start_atlas.sh
[2025-12-19 01:42:03] -rw-r--r-- 2 yeti boinc    592400 Dez 19 00:49 input.tar.gz
[2025-12-19 01:42:03] -rw------- 1 yeti boinc 145565982 Dez 19 01:40 HITS.pool.root.1
[2025-12-19 01:42:03] -rw------- 1 yeti boinc    757760 Dez 19 01:42 result.tar.gz
01:42:04 (128518): run_atlas exited; CPU time 11443.117697
01:42:04 (128518): called boinc_finish(0)

</stderr_txt>
]]>

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