Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
19:48:22 (3934460): wrapper (7.7.26015): starting
19:48:22 (3934460): wrapper: running run_atlas (--nthreads 4)
[2025-12-18 19:48:22] Arguments: --nthreads 4
[2025-12-18 19:48:22] Threads: 4
[2025-12-18 19:48:22] Checking for CVMFS
[2025-12-18 19:48:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 19:48:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 19:48:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 19:48:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 19:48:22] 2.13.1.0 189701 6914 101612 154161 0 188 7903989 10240000 1822 130560 0 19895901 99.997 256583 250 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-18 19:48:22] CVMFS is ok
[2025-12-18 19:48:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 19:48:22] Checking for apptainer binary...
[2025-12-18 19:48:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 19:48:22] Running /usr/bin/apptainer --version
[2025-12-18 19:48:22] apptainer version 1.4.2
[2025-12-18 19:48:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 19:48:22] julianvlneu
[2025-12-18 19:48:22] apptainer works
[2025-12-18 19:48:22] Set ATHENA_PROC_NUMBER=4
[2025-12-18 19:48:22] Set ATHENA_CORE_NUMBER=4
[2025-12-18 19:48:22] Starting ATLAS job with PandaID=6933049145
[2025-12-18 19:48:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 20:39:07]  *** The last 200 lines of the pilot log: ***
[2025-12-18 20:39:07]  workdir=None
[2025-12-18 20:39:07] ]
[2025-12-18 20:39:07] 2025-12-18 19:38:23,185 | INFO     | transferring file log.47929408._000353.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6933049145/log.47929408._000353.job.log.tgz.1 to /var/li
[2025-12-18 20:39:07] 2025-12-18 19:38:23,185 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6933049145/log.47929408._000353.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-18 20:39:07] 2025-12-18 19:38:23,207 | INFO     | adding to output.list: log.47929408._000353.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/ac/log.47929408._000353.job.log.tg
[2025-12-18 20:39:07] 2025-12-18 19:38:23,208 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-18 20:39:07] 2025-12-18 19:38:23,208 | INFO     | summary of transferred files:
[2025-12-18 20:39:07] 2025-12-18 19:38:23,208 | INFO     |  -- lfn=log.47929408._000353.job.log.tgz.1, status_code=0, status=transferred
[2025-12-18 20:39:07] 2025-12-18 19:38:23,208 | INFO     | stage-out finished correctly
[2025-12-18 20:39:07] 2025-12-18 19:38:23,938 | INFO     | time since job start (2987s) is within the limit (174528.0s)
[2025-12-18 20:39:07] 2025-12-18 19:38:25,235 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-18 20:39:07] 2025-12-18 19:38:25,577 | WARNING  | process 3944965 can no longer be monitored (due to stat problems) - aborting
[2025-12-18 20:39:07] 2025-12-18 19:38:25,578 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6933049145/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 20:39:07] 2025-12-18 19:38:25,675 | INFO     | number of running child processes to parent process 3944965: 1
[2025-12-18 20:39:07] 2025-12-18 19:38:25,675 | INFO     | maximum number of monitored processes: 6
[2025-12-18 20:39:07] 2025-12-18 19:38:25,945 | INFO     | time since job start (2989s) is within the limit (174528.0s)
[2025-12-18 20:39:07] 2025-12-18 19:38:27,661 | INFO     | job 6933049145 has state=finished
[2025-12-18 20:39:07] 2025-12-18 19:38:27,661 | INFO     | preparing for final server update for job 6933049145 in state='finished'
[2025-12-18 20:39:07] 2025-12-18 19:38:27,951 | INFO     | time since job start (2991s) is within the limit (174528.0s)
[2025-12-18 20:39:07] 2025-12-18 19:38:28,179 | INFO     | monitor loop #230: job 0:6933049145 is in state 'finished'
[2025-12-18 20:39:07] 2025-12-18 19:38:28,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 20:39:07] 2025-12-18 19:38:28,292 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-18 20:39:07] 2025-12-18 19:38:28,292 | INFO     | this job has now completed (state=finished)
[2025-12-18 20:39:07] 2025-12-18 19:38:28,292 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-18 20:39:07] 2025-12-18 19:38:28,292 | INFO     | log transfer has been attempted: DONE
[2025-12-18 20:39:07] 2025-12-18 19:38:28,293 | INFO     | job 6933049145 has finished - writing final server update
[2025-12-18 20:39:07] 2025-12-18 19:38:28,293 | INFO     | total number of processed events: 400 (read)
[2025-12-18 20:39:07] 2025-12-18 19:38:28,293 | INFO     | executing command: lscpu
[2025-12-18 20:39:07] 2025-12-18 19:38:28,316 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-18 20:39:07] 2025-12-18 19:38:29,957 | INFO     | time since job start (2993s) is within the limit (174528.0s)
[2025-12-18 20:39:07] 2025-12-18 19:38:30,683 | INFO     | monitor loop #231: job 0:6933049145 is in state 'finished'
[2025-12-18 20:39:07] 2025-12-18 19:38:30,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 20:39:07] 2025-12-18 19:38:31,963 | INFO     | time since job start (2995s) is within the limit (174528.0s)
[2025-12-18 20:39:07] 2025-12-18 19:38:33,185 | INFO     | monitor loop #232: job 0:6933049145 is in state 'finished'
[2025-12-18 20:39:07] 2025-12-18 19:38:33,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 20:39:07] 2025-12-18 19:38:33,969 | INFO     | time since job start (2997s) is within the limit (174528.0s)
[2025-12-18 20:39:07] 2025-12-18 19:38:34,524 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-18 20:39:07] 2025-12-18 19:38:34,525 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 4399.884000000001
[2025-12-18 20:39:07] 2025-12-18 19:38:34,527 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6933049145/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 20:39:07] 2025-12-18 19:38:34,527 | INFO     | extracted standard info from prmon json
[2025-12-18 20:39:07] 2025-12-18 19:38:34,527 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 20:39:07] 2025-12-18 19:38:34,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 20:39:07] 2025-12-18 19:38:34,527 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 20:39:07] 2025-12-18 19:38:34,528 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 20:39:07] 2025-12-18 19:38:34,528 | INFO     | fitting pss+swap vs Time
[2025-12-18 20:39:07] 2025-12-18 19:38:34,528 | INFO     | sum of square deviations: 22960430.5
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | sum of deviations: -1215884299.5
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | mean x: 1766085301.5
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | mean y: 2374130.6428571427
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | intersect: 93526552158.20961
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | chi2: 0.008267192481655337
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | current memory leak: -52.96 B/s (using 42 data points, chi2=0.01)
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | could have reported an average CPU frequency of 4399 MHz (5 samples)
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | ..............................
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | . Timing measurements:
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | . get job = 0 s
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | . initial setup = 1 s
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | . payload setup = 7 s
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | . stage-in = 0 s
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | . payload execution = 2959 s
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | . stage-out = 0 s
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | . log creation = 0 s
[2025-12-18 20:39:07] 2025-12-18 19:38:34,529 | INFO     | ..............................
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | 
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | job summary report
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | --------------------------------------------------
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | PanDA job id: 6933049145
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | task id: 47929408
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | errors: (none)
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | pilot state: finished 
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | transexitcode: 0
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | exeerrorcode: 0
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | exeerrordiag: 
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | exitcode: 0
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | exitmsg: OK
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | cpuconsumptiontime: 10970 s
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | nevents: 400
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | neventsw: 0
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | pid: 3944965
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | pgrp: 3944965
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | corecount: 4
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | event service: False
[2025-12-18 20:39:07] 2025-12-18 19:38:34,557 | INFO     | sizes: {0: 2284051, 5: 2284313, 10: 2284369, 2970: 2318743, 2972: 2318743, 2982: 2318969}
[2025-12-18 20:39:07] 2025-12-18 19:38:34,558 | INFO     | --------------------------------------------------
[2025-12-18 20:39:07] 2025-12-18 19:38:34,558 | INFO     | 
[2025-12-18 20:39:07] 2025-12-18 19:38:34,558 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/0
[2025-12-18 20:39:07] 2025-12-18 19:38:34,578 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | job 6933049145 has completed (purged errors)
[2025-12-18 20:39:07] 2025-12-18 19:38:34,579 | INFO     | overall cleanup function is called
[2025-12-18 20:39:07] 2025-12-18 19:38:35,586 | INFO     | --- collectZombieJob: --- 10, [3944965]
[2025-12-18 20:39:07] 2025-12-18 19:38:35,586 | INFO     | zombie collector waiting for pid 3944965
[2025-12-18 20:39:07] 2025-12-18 19:38:35,586 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 20:39:07] 2025-12-18 19:38:35,586 | INFO     | collected zombie processes
[2025-12-18 20:39:07] 2025-12-18 19:38:35,586 | INFO     | will attempt to kill all subprocesses of pid=3944965
[2025-12-18 20:39:07] 2025-12-18 19:38:35,687 | INFO     | process IDs to be killed: [3944965] (in reverse order)
[2025-12-18 20:39:07] 2025-12-18 19:38:35,747 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 20:39:07] 2025-12-18 19:38:35,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 20:39:07] 2025-12-18 19:38:35,751 | INFO     | did not find any defunct processes belonging to 3944965
[2025-12-18 20:39:07] 2025-12-18 19:38:35,754 | INFO     | did not find any defunct processes belonging to 3944965
[2025-12-18 20:39:07] 2025-12-18 19:38:35,754 | INFO     | ready for new job
[2025-12-18 20:39:07] 2025-12-18 19:38:35,754 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 20:39:07] 2025-12-18 19:38:35,755 | INFO     | ***************************************
[2025-12-18 20:39:07] 2025-12-18 19:38:35,756 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 20:39:07] 2025-12-18 19:38:35,756 | INFO     | ***************************************
[2025-12-18 20:39:07] 2025-12-18 19:38:35,756 | INFO     | 
[2025-12-18 20:39:07] 2025-12-18 19:38:35,756 | INFO     | pilot is running in a VM
[2025-12-18 20:39:07] 2025-12-18 19:38:35,756 | INFO     | architecture information:
[2025-12-18 20:39:07] 2025-12-18 19:38:35,757 | INFO     | executing command: cat /etc/os-release
[2025-12-18 20:39:07] 2025-12-18 19:38:35,770 | INFO     | cat /etc/os-release:
[2025-12-18 20:39:07] NAME="CentOS Linux"
[2025-12-18 20:39:07] VERSION="7 (Core)"
[2025-12-18 20:39:07] ID="centos"
[2025-12-18 20:39:07] ID_LIKE="rhel fedora"
[2025-12-18 20:39:07] VERSION_ID="7"
[2025-12-18 20:39:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 20:39:07] ANSI_COLOR="0;31"
[2025-12-18 20:39:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 20:39:07] HOME_URL="https://www.centos.org/"
[2025-12-18 20:39:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 20:39:07] 
[2025-12-18 20:39:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 20:39:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 20:39:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 20:39:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 20:39:07] 
[2025-12-18 20:39:07] 2025-12-18 19:38:35,771 | INFO     | ***************************************
[2025-12-18 20:39:07] 2025-12-18 19:38:36,274 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/0
[2025-12-18 20:39:07] 2025-12-18 19:38:36,290 | INFO     | sufficient remaining disk space (146022596608 B)
[2025-12-18 20:39:07] 2025-12-18 19:38:36,290 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 20:39:07] 2025-12-18 19:38:36,290 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 20:39:07] 2025-12-18 19:38:36,290 | INFO     | update_server=False
[2025-12-18 20:39:07] 2025-12-18 19:38:36,290 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 20:39:07] 2025-12-18 19:38:36,291 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 20:39:07] 2025-12-18 19:38:36,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 20:39:07] 2025-12-18 19:38:36,291 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 20:39:07] 2025-12-18 19:38:36,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 20:39:07] 2025-12-18 19:38:36,696 | INFO     | aborting loop
[2025-12-18 20:39:07] 2025-12-18 19:38:36,798 | INFO     | all job control threads have been joined
[2025-12-18 20:39:07] 2025-12-18 19:38:37,262 | INFO     | all data control threads have been joined
[2025-12-18 20:39:07] 2025-12-18 19:38:37,296 | INFO     | [job] queue monitor thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:37,297 | INFO     | [job] retrieve thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:37,424 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:37,660 | INFO     | all payload control threads have been joined
[2025-12-18 20:39:07] 2025-12-18 19:38:37,701 | INFO     | [job] job monitor thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:37,804 | INFO     | [job] control thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:37,819 | INFO     | [data] copytool_in thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:38,267 | INFO     | [data] control thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:38,297 | INFO     | [data] copytool_out thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:38,325 | INFO     | [job] validate thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:38,326 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:38,353 | INFO     | [payload] validate_post thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:38,379 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:38,590 | INFO     | [payload] failed_post thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:38,661 | INFO     | [payload] control thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:39,987 | INFO     | [monitor] cgroup control has ended
[2025-12-18 20:39:07] 2025-12-18 19:38:40,298 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:46,660 | INFO     | job.realtimelogging is not enabled
[2025-12-18 20:39:07] 2025-12-18 19:38:47,666 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 20:39:07] 2025-12-18 19:38:48,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123816707802944)>', '<ExcThread(monitor, started 123815761790720)>']
[2025-12-18 20:39:07] 2025-12-18 19:38:53,624 | INFO     | all workflow threads have been joined
[2025-12-18 20:39:07] 2025-12-18 19:38:53,624 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 20:39:07] 2025-12-18 19:38:53,624 | INFO     | traces error code: 0
[2025-12-18 20:39:07] 2025-12-18 19:38:53,625 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 20:39:07] 2025-12-18 19:39:07,182 | INFO     | PID=3938315 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 20:39:07] 2025-12-18 19:39:07,183 | INFO     | .. there are 3 such processes running
[2025-12-18 20:39:07] 2025-12-18 19:39:07,183 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 20:39:07] 2025-12-18 19:39:07,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 20:39:07] 2025-12-18 19:39:07,183 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 20:39:07] 2025-12-18 19:39:07,183 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 20:39:07] 2025-12-18 19:39:07,183 | INFO     | [monitor] control thread has ended
[2025-12-18 20:39:07] 2025-12-18 19:39:07,254 [wrapper] ==== pilot stdout END ====
[2025-12-18 20:39:07] 2025-12-18 19:39:07,259 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 20:39:07] 2025-12-18 19:39:07,264 [wrapper] pilotpid: 3938315
[2025-12-18 20:39:07] 2025-12-18 19:39:07,268 [wrapper] Pilot exit status: 0
[2025-12-18 20:39:07] 2025-12-18 19:39:07,282 [wrapper] pandaids: 6933049145
[2025-12-18 20:39:07] 2025-12-18 19:39:07,327 [wrapper] cleanup supervisor_pilot 3981870 3938316
[2025-12-18 20:39:07] 2025-12-18 19:39:07,332 [wrapper] Test setup, not cleaning
[2025-12-18 20:39:07] 2025-12-18 19:39:07,337 [wrapper] apfmon messages muted
[2025-12-18 20:39:07] 2025-12-18 19:39:07,342 [wrapper] ==== wrapper stdout END ====
[2025-12-18 20:39:07] 2025-12-18 19:39:07,347 [wrapper] ==== wrapper stderr END ====
[2025-12-18 20:39:07]  *** Error codes and diagnostics ***
[2025-12-18 20:39:07]     "exeErrorCode": 0,
[2025-12-18 20:39:07]     "exeErrorDiag": "",
[2025-12-18 20:39:07]     "pilotErrorCode": 0,
[2025-12-18 20:39:07]     "pilotErrorDiag": "",
[2025-12-18 20:39:07]  *** Listing of results directory ***
[2025-12-18 20:39:07] insgesamt 430620
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc    579449 Dez 18 04:11 pilot3.tar.gz
[2025-12-18 20:39:07] -rwx------ 1 yeti boinc     36322 Dez 18 04:15 runpilot2-wrapper.sh
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc      5112 Dez 18 04:15 queuedata.json
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc       100 Dez 18 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 20:39:07] -rwxr-xr-x 1 yeti boinc      7986 Dez 18 19:48 run_atlas
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc       105 Dez 18 19:48 job.xml
[2025-12-18 20:39:07] -rw-r--r-- 2 yeti boinc     15847 Dez 18 19:48 start_atlas.sh
[2025-12-18 20:39:07] drwxrwx--x 2 yeti boinc      4096 Dez 18 19:48 shared
[2025-12-18 20:39:07] -rw-r--r-- 2 yeti boinc    592415 Dez 18 19:48 input.tar.gz
[2025-12-18 20:39:07] -rw-r--r-- 2 yeti boinc 253551246 Dez 18 19:48 EVNT.47929406._000019.pool.root.1
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc         0 Dez 18 19:48 boinc_setup_complete
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc      6730 Dez 18 19:48 init_data.xml
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc         0 Dez 18 19:48 boinc_lockfile
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc      2573 Dez 18 19:48 pandaJob.out
[2025-12-18 20:39:07] -rw------- 1 yeti boinc        52 Dez 18 19:48 setup.sh.local
[2025-12-18 20:39:07] -rw------- 1 yeti boinc    988872 Dez 18 19:48 agis_schedconf.cvmfs.json
[2025-12-18 20:39:07] -rw------- 1 yeti boinc   1516240 Dez 18 19:48 agis_ddmendpoints.agis.ALL.json
[2025-12-18 20:39:07] drwx------ 5 yeti boinc      4096 Dez 18 19:48 pilot3
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc       529 Dez 18 20:38 boinc_task_state.xml
[2025-12-18 20:39:07] -rw------- 1 yeti boinc 182090240 Dez 18 20:38 HITS.47929408._000353.pool.root.1
[2025-12-18 20:39:07] -rw------- 1 yeti boinc      1014 Dez 18 20:38 memory_monitor_summary.json
[2025-12-18 20:39:07] -rw------- 1 yeti boinc    227634 Dez 18 20:38 log.47929408._000353.job.log.tgz.1
[2025-12-18 20:39:07] -rw------- 1 yeti boinc      7726 Dez 18 20:38 heartbeat.json
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc      8192 Dez 18 20:38 boinc_mmap_file
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc        27 Dez 18 20:38 wrapper_checkpoint.txt
[2025-12-18 20:39:07] -rw------- 1 yeti boinc        95 Dez 18 20:39 pilot_heartbeat.json
[2025-12-18 20:39:07] -rw------- 1 yeti boinc       822 Dez 18 20:39 pilotlog.txt
[2025-12-18 20:39:07] -rw------- 1 yeti boinc    472169 Dez 18 20:39 log.47929408._000353.job.log.1
[2025-12-18 20:39:07] -rw------- 1 yeti boinc       357 Dez 18 20:39 output.list
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc       620 Dez 18 20:39 runtime_log
[2025-12-18 20:39:07] -rw------- 1 yeti boinc    716800 Dez 18 20:39 result.tar.gz
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc      9557 Dez 18 20:39 runtime_log.err
[2025-12-18 20:39:07] -rw------- 1 yeti boinc       640 Dez 18 20:39 8uYNDmLfJq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOhYKDmoWASDo.diag
[2025-12-18 20:39:07] -rw-r--r-- 1 yeti boinc     22021 Dez 18 20:39 stderr.txt
[2025-12-18 20:39:07] HITS file was successfully produced:
[2025-12-18 20:39:07] -rw------- 1 yeti boinc 182090240 Dez 18 20:38 shared/HITS.pool.root.1
[2025-12-18 20:39:07]  *** Contents of shared directory: ***
[2025-12-18 20:39:07] insgesamt 426740
[2025-12-18 20:39:07] -rw-r--r-- 2 yeti boinc     15847 Dez 18 19:48 start_atlas.sh
[2025-12-18 20:39:07] -rw-r--r-- 2 yeti boinc    592415 Dez 18 19:48 input.tar.gz
[2025-12-18 20:39:07] -rw-r--r-- 2 yeti boinc 253551246 Dez 18 19:48 ATLAS.root_0
[2025-12-18 20:39:07] -rw------- 1 yeti boinc 182090240 Dez 18 20:38 HITS.pool.root.1
[2025-12-18 20:39:07] -rw------- 1 yeti boinc    716800 Dez 18 20:39 result.tar.gz
20:39:09 (3934460): run_atlas exited; CPU time 11048.072396
20:39:09 (3934460): called boinc_finish(0)

</stderr_txt>
]]>

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