Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
21:12:11 (4032636): wrapper (7.7.26015): starting
21:12:11 (4032636): wrapper: running run_atlas (--nthreads 4)
[2025-12-18 21:12:11] Arguments: --nthreads 4
[2025-12-18 21:12:11] Threads: 4
[2025-12-18 21:12:11] Checking for CVMFS
[2025-12-18 21:12:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 21:12:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 21:12:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 21:12:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 21:12:11] 2.13.1.0 189701 6998 101480 154163 0 188 7935794 10240001 1822 130560 0 20153504 99.997 259336 250 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-12-18 21:12:11] CVMFS is ok
[2025-12-18 21:12:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 21:12:11] Checking for apptainer binary...
[2025-12-18 21:12:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 21:12:11] Running /usr/bin/apptainer --version
[2025-12-18 21:12:11] apptainer version 1.4.2
[2025-12-18 21:12:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 21:12:11] julianvlneu
[2025-12-18 21:12:11] apptainer works
[2025-12-18 21:12:11] Set ATHENA_PROC_NUMBER=4
[2025-12-18 21:12:11] Set ATHENA_CORE_NUMBER=4
[2025-12-18 21:12:11] Starting ATLAS job with PandaID=6932716598
[2025-12-18 21:12:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 22:08:50]  *** The last 200 lines of the pilot log: ***
[2025-12-18 22:08:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/07/log.47886933._013631.job.log.tgz.1
[2025-12-18 22:08:50]  workdir=None
[2025-12-18 22:08:50] ]
[2025-12-18 22:08:50] 2025-12-18 21:08:06,348 | INFO     | transferring file log.47886933._013631.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6932716598/log.47886933._013631.job.log.tgz.1 to /var/li
[2025-12-18 22:08:50] 2025-12-18 21:08:06,348 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6932716598/log.47886933._013631.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-12-18 22:08:50] 2025-12-18 21:08:06,369 | INFO     | adding to output.list: log.47886933._013631.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/07/log.47886933._013631.job.log.tg
[2025-12-18 22:08:50] 2025-12-18 21:08:06,370 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-18 22:08:50] 2025-12-18 21:08:06,370 | INFO     | summary of transferred files:
[2025-12-18 22:08:50] 2025-12-18 21:08:06,370 | INFO     |  -- lfn=log.47886933._013631.job.log.tgz.1, status_code=0, status=transferred
[2025-12-18 22:08:50] 2025-12-18 21:08:06,370 | INFO     | stage-out finished correctly
[2025-12-18 22:08:50] 2025-12-18 21:08:06,919 | INFO     | time since job start (3342s) is within the limit (174528.0s)
[2025-12-18 22:08:50] 2025-12-18 21:08:08,925 | INFO     | time since job start (3344s) is within the limit (174528.0s)
[2025-12-18 22:08:50] 2025-12-18 21:08:09,044 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-18 22:08:50] 2025-12-18 21:08:09,067 | INFO     | job 6932716598 has state=finished
[2025-12-18 22:08:50] 2025-12-18 21:08:09,067 | INFO     | preparing for final server update for job 6932716598 in state='finished'
[2025-12-18 22:08:50] 2025-12-18 21:08:09,068 | INFO     | this job has now completed (state=finished)
[2025-12-18 22:08:50] 2025-12-18 21:08:09,068 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-18 22:08:50] 2025-12-18 21:08:09,068 | INFO     | log transfer has been attempted: DONE
[2025-12-18 22:08:50] 2025-12-18 21:08:09,068 | INFO     | job 6932716598 has finished - writing final server update
[2025-12-18 22:08:50] 2025-12-18 21:08:09,068 | INFO     | total number of processed events: 400 (read)
[2025-12-18 22:08:50] 2025-12-18 21:08:09,069 | INFO     | executing command: lscpu
[2025-12-18 22:08:50] 2025-12-18 21:08:09,092 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-18 22:08:50] 2025-12-18 21:08:10,090 | INFO     | PID=4036486 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 22:08:50] 2025-12-18 21:08:10,090 | INFO     | .. there are 3 such processes running
[2025-12-18 22:08:50] 2025-12-18 21:08:11,091 | INFO     | time since job start (3347s) is within the limit (174528.0s)
[2025-12-18 22:08:50] 2025-12-18 21:08:11,655 | WARNING  | process 4043133 can no longer be monitored (due to stat problems) - aborting
[2025-12-18 22:08:50] 2025-12-18 21:08:11,655 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6932716598/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 22:08:50] 2025-12-18 21:08:11,782 | INFO     | number of running child processes to parent process 4043133: 1
[2025-12-18 22:08:50] 2025-12-18 21:08:11,783 | INFO     | maximum number of monitored processes: 6
[2025-12-18 22:08:50] 2025-12-18 21:08:13,096 | INFO     | time since job start (3349s) is within the limit (174528.0s)
[2025-12-18 22:08:50] 2025-12-18 21:08:14,287 | INFO     | monitor loop #256: job 0:6932716598 is in state 'finished'
[2025-12-18 22:08:50] 2025-12-18 21:08:14,287 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 22:08:50] 2025-12-18 21:08:15,103 | INFO     | time since job start (3351s) is within the limit (174528.0s)
[2025-12-18 22:08:50] 2025-12-18 21:08:16,791 | INFO     | monitor loop #257: job 0:6932716598 is in state 'finished'
[2025-12-18 22:08:50] 2025-12-18 21:08:16,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 22:08:50] 2025-12-18 21:08:17,109 | INFO     | time since job start (3353s) is within the limit (174528.0s)
[2025-12-18 22:08:50] 2025-12-18 21:08:19,036 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-18 22:08:50] 2025-12-18 21:08:19,037 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 4399.884000000001
[2025-12-18 22:08:50] 2025-12-18 21:08:19,038 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-6932716598/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 22:08:50] 2025-12-18 21:08:19,038 | INFO     | extracted standard info from prmon json
[2025-12-18 22:08:50] 2025-12-18 21:08:19,038 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 22:08:50] 2025-12-18 21:08:19,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 22:08:50] 2025-12-18 21:08:19,039 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 22:08:50] 2025-12-18 21:08:19,039 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | fitting pss+swap vs Time
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | sum of square deviations: 32179208.0
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | sum of deviations: -3979971535.0
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | mean x: 1766090516.0
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | mean y: 2655155.4680851065
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | intersect: 218435314589.26962
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | chi2: 0.04348708627446452
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | current memory leak: -123.68 B/s (using 47 data points, chi2=0.04)
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | could have reported an average CPU frequency of 4399 MHz (5 samples)
[2025-12-18 22:08:50] 2025-12-18 21:08:19,040 | INFO     | ..............................
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | . Timing measurements:
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | . get job = 0 s
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | . initial setup = 1 s
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | . payload setup = 7 s
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | . stage-in = 0 s
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | . payload execution = 3315 s
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | . stage-out = 0 s
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | . log creation = 0 s
[2025-12-18 22:08:50] 2025-12-18 21:08:19,041 | INFO     | ..............................
[2025-12-18 22:08:50] 2025-12-18 21:08:19,075 | INFO     | 
[2025-12-18 22:08:50] 2025-12-18 21:08:19,075 | INFO     | job summary report
[2025-12-18 22:08:50] 2025-12-18 21:08:19,075 | INFO     | --------------------------------------------------
[2025-12-18 22:08:50] 2025-12-18 21:08:19,075 | INFO     | PanDA job id: 6932716598
[2025-12-18 22:08:50] 2025-12-18 21:08:19,075 | INFO     | task id: 47886933
[2025-12-18 22:08:50] 2025-12-18 21:08:19,075 | INFO     | errors: (none)
[2025-12-18 22:08:50] 2025-12-18 21:08:19,075 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 22:08:50] 2025-12-18 21:08:19,075 | INFO     | pilot state: finished 
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | transexitcode: 0
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | exeerrorcode: 0
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | exeerrordiag: 
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | exitcode: 0
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | exitmsg: OK
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | cpuconsumptiontime: 12275 s
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | nevents: 400
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | neventsw: 0
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | pid: 4043133
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | pgrp: 4043133
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | corecount: 4
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | event service: False
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | sizes: {0: 2283983, 5: 2284245, 10: 2284301, 3325: 2309887, 3326: 2318913, 3328: 2318969, 3338: 2319323}
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | --------------------------------------------------
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | 
[2025-12-18 22:08:50] 2025-12-18 21:08:19,076 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2025-12-18 22:08:50] 2025-12-18 21:08:19,097 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,097 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,097 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,097 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | job 6932716598 has completed (purged errors)
[2025-12-18 22:08:50] 2025-12-18 21:08:19,098 | INFO     | overall cleanup function is called
[2025-12-18 22:08:50] 2025-12-18 21:08:20,105 | INFO     | --- collectZombieJob: --- 10, [4043133]
[2025-12-18 22:08:50] 2025-12-18 21:08:20,105 | INFO     | zombie collector waiting for pid 4043133
[2025-12-18 22:08:50] 2025-12-18 21:08:20,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 22:08:50] 2025-12-18 21:08:20,105 | INFO     | collected zombie processes
[2025-12-18 22:08:50] 2025-12-18 21:08:20,105 | INFO     | will attempt to kill all subprocesses of pid=4043133
[2025-12-18 22:08:50] 2025-12-18 21:08:20,213 | INFO     | process IDs to be killed: [4043133] (in reverse order)
[2025-12-18 22:08:50] 2025-12-18 21:08:20,272 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 22:08:50] 2025-12-18 21:08:20,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 22:08:50] 2025-12-18 21:08:20,276 | INFO     | did not find any defunct processes belonging to 4043133
[2025-12-18 22:08:50] 2025-12-18 21:08:20,279 | INFO     | did not find any defunct processes belonging to 4043133
[2025-12-18 22:08:50] 2025-12-18 21:08:20,279 | INFO     | ready for new job
[2025-12-18 22:08:50] 2025-12-18 21:08:20,280 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 22:08:50] 2025-12-18 21:08:20,281 | INFO     | ***************************************
[2025-12-18 22:08:50] 2025-12-18 21:08:20,281 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 22:08:50] 2025-12-18 21:08:20,281 | INFO     | ***************************************
[2025-12-18 22:08:50] 2025-12-18 21:08:20,281 | INFO     | 
[2025-12-18 22:08:50] 2025-12-18 21:08:20,282 | INFO     | pilot is running in a VM
[2025-12-18 22:08:50] 2025-12-18 21:08:20,282 | INFO     | architecture information:
[2025-12-18 22:08:50] 2025-12-18 21:08:20,282 | INFO     | executing command: cat /etc/os-release
[2025-12-18 22:08:50] 2025-12-18 21:08:20,295 | INFO     | cat /etc/os-release:
[2025-12-18 22:08:50] NAME="CentOS Linux"
[2025-12-18 22:08:50] VERSION="7 (Core)"
[2025-12-18 22:08:50] ID="centos"
[2025-12-18 22:08:50] ID_LIKE="rhel fedora"
[2025-12-18 22:08:50] VERSION_ID="7"
[2025-12-18 22:08:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 22:08:50] ANSI_COLOR="0;31"
[2025-12-18 22:08:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 22:08:50] HOME_URL="https://www.centos.org/"
[2025-12-18 22:08:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 22:08:50] 
[2025-12-18 22:08:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 22:08:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 22:08:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 22:08:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 22:08:50] 
[2025-12-18 22:08:50] 2025-12-18 21:08:20,295 | INFO     | ***************************************
[2025-12-18 22:08:50] 2025-12-18 21:08:20,798 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2025-12-18 22:08:50] 2025-12-18 21:08:20,812 | INFO     | sufficient remaining disk space (146219728896 B)
[2025-12-18 22:08:50] 2025-12-18 21:08:20,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 22:08:50] 2025-12-18 21:08:20,813 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 22:08:50] 2025-12-18 21:08:20,813 | INFO     | update_server=False
[2025-12-18 22:08:50] 2025-12-18 21:08:20,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 22:08:50] 2025-12-18 21:08:20,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 22:08:50] 2025-12-18 21:08:20,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 22:08:50] 2025-12-18 21:08:20,813 | INFO     | aborting loop
[2025-12-18 22:08:50] 2025-12-18 21:08:21,608 | INFO     | all data control threads have been joined
[2025-12-18 22:08:50] 2025-12-18 21:08:21,819 | INFO     | [job] queue monitor thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:21,819 | INFO     | [job] retrieve thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:21,819 | INFO     | [job] job monitor thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:21,836 | INFO     | all payload control threads have been joined
[2025-12-18 22:08:50] 2025-12-18 21:08:21,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 22:08:50] 2025-12-18 21:08:21,930 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:21,961 | INFO     | [data] copytool_in thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:22,259 | INFO     | all job control threads have been joined
[2025-12-18 22:08:50] 2025-12-18 21:08:22,540 | INFO     | [job] validate thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:22,585 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:22,585 | INFO     | [payload] failed_post thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:22,614 | INFO     | [data] control thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:22,663 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:22,841 | INFO     | [payload] control thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:23,106 | INFO     | [payload] validate_post thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:23,264 | INFO     | [job] control thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:23,924 | INFO     | [data] copytool_out thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:24,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 22:08:50] 2025-12-18 21:08:28,093 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:28,218 | INFO     | [monitor] cgroup control has ended
[2025-12-18 22:08:50] 2025-12-18 21:08:31,326 | INFO     | job.realtimelogging is not enabled
[2025-12-18 22:08:50] 2025-12-18 21:08:32,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 22:08:50] 2025-12-18 21:08:33,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138622654228288)>', '<ExcThread(monitor, started 138621772343040)>']
[2025-12-18 22:08:50] 2025-12-18 21:08:38,419 | INFO     | all workflow threads have been joined
[2025-12-18 22:08:50] 2025-12-18 21:08:38,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 22:08:50] 2025-12-18 21:08:38,420 | INFO     | traces error code: 0
[2025-12-18 22:08:50] 2025-12-18 21:08:38,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 22:08:50] 2025-12-18 21:08:50,321 | INFO     | PID=4036486 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 22:08:50] 2025-12-18 21:08:50,322 | INFO     | .. there are 3 such processes running
[2025-12-18 22:08:50] 2025-12-18 21:08:50,322 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 22:08:50] 2025-12-18 21:08:50,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 22:08:50] 2025-12-18 21:08:50,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 22:08:50] 2025-12-18 21:08:50,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 22:08:50] 2025-12-18 21:08:50,322 | INFO     | [monitor] control thread has ended
[2025-12-18 22:08:50] 2025-12-18 21:08:50,397 [wrapper] ==== pilot stdout END ====
[2025-12-18 22:08:50] 2025-12-18 21:08:50,401 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 22:08:50] 2025-12-18 21:08:50,406 [wrapper] pilotpid: 4036486
[2025-12-18 22:08:50] 2025-12-18 21:08:50,410 [wrapper] Pilot exit status: 0
[2025-12-18 22:08:50] 2025-12-18 21:08:50,427 [wrapper] pandaids: 6932716598
[2025-12-18 22:08:50] 2025-12-18 21:08:50,471 [wrapper] cleanup supervisor_pilot 4102301 4036487
[2025-12-18 22:08:50] 2025-12-18 21:08:50,476 [wrapper] Test setup, not cleaning
[2025-12-18 22:08:50] 2025-12-18 21:08:50,481 [wrapper] apfmon messages muted
[2025-12-18 22:08:50] 2025-12-18 21:08:50,485 [wrapper] ==== wrapper stdout END ====
[2025-12-18 22:08:50] 2025-12-18 21:08:50,490 [wrapper] ==== wrapper stderr END ====
[2025-12-18 22:08:50]  *** Error codes and diagnostics ***
[2025-12-18 22:08:50]     "exeErrorCode": 0,
[2025-12-18 22:08:50]     "exeErrorDiag": "",
[2025-12-18 22:08:50]     "pilotErrorCode": 0,
[2025-12-18 22:08:50]     "pilotErrorDiag": "",
[2025-12-18 22:08:50]  *** Listing of results directory ***
[2025-12-18 22:08:50] insgesamt 345408
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc    579449 Dez 18 04:11 pilot3.tar.gz
[2025-12-18 22:08:50] -rwx------ 1 yeti boinc     36322 Dez 18 04:15 runpilot2-wrapper.sh
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc      5112 Dez 18 04:15 queuedata.json
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc       100 Dez 18 21:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 22:08:50] -rwxr-xr-x 1 yeti boinc      7986 Dez 18 21:12 run_atlas
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc       105 Dez 18 21:12 job.xml
[2025-12-18 22:08:50] -rw-r--r-- 2 yeti boinc 193652489 Dez 18 21:12 EVNT.47886929._000582.pool.root.1
[2025-12-18 22:08:50] -rw-r--r-- 2 yeti boinc     15847 Dez 18 21:12 start_atlas.sh
[2025-12-18 22:08:50] drwxrwx--x 2 yeti boinc      4096 Dez 18 21:12 shared
[2025-12-18 22:08:50] -rw-r--r-- 2 yeti boinc    592406 Dez 18 21:12 input.tar.gz
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc      6730 Dez 18 21:12 init_data.xml
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc         0 Dez 18 21:12 boinc_setup_complete
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc         0 Dez 18 21:12 boinc_lockfile
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc      2515 Dez 18 21:12 pandaJob.out
[2025-12-18 22:08:50] -rw------- 1 yeti boinc        52 Dez 18 21:12 setup.sh.local
[2025-12-18 22:08:50] -rw------- 1 yeti boinc    988880 Dez 18 21:12 agis_schedconf.cvmfs.json
[2025-12-18 22:08:50] -rw------- 1 yeti boinc   1516240 Dez 18 21:12 agis_ddmendpoints.agis.ALL.json
[2025-12-18 22:08:50] drwx------ 5 yeti boinc      4096 Dez 18 21:12 pilot3
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc       529 Dez 18 22:07 boinc_task_state.xml
[2025-12-18 22:08:50] -rw------- 1 yeti boinc 154573381 Dez 18 22:07 HITS.47886933._013631.pool.root.1
[2025-12-18 22:08:50] -rw------- 1 yeti boinc        95 Dez 18 22:07 pilot_heartbeat.json
[2025-12-18 22:08:50] -rw------- 1 yeti boinc      1015 Dez 18 22:08 memory_monitor_summary.json
[2025-12-18 22:08:50] -rw------- 1 yeti boinc    256472 Dez 18 22:08 log.47886933._013631.job.log.tgz.1
[2025-12-18 22:08:50] -rw------- 1 yeti boinc      7734 Dez 18 22:08 heartbeat.json
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc        27 Dez 18 22:08 wrapper_checkpoint.txt
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc      8192 Dez 18 22:08 boinc_mmap_file
[2025-12-18 22:08:50] -rw------- 1 yeti boinc       822 Dez 18 22:08 pilotlog.txt
[2025-12-18 22:08:50] -rw------- 1 yeti boinc    521165 Dez 18 22:08 log.47886933._013631.job.log.1
[2025-12-18 22:08:50] -rw------- 1 yeti boinc       357 Dez 18 22:08 output.list
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc       620 Dez 18 22:08 runtime_log
[2025-12-18 22:08:50] -rw------- 1 yeti boinc    798720 Dez 18 22:08 result.tar.gz
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc      9557 Dez 18 22:08 runtime_log.err
[2025-12-18 22:08:50] -rw------- 1 yeti boinc       640 Dez 18 22:08 i7oMDm0eJq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBeYKDmUccFrm.diag
[2025-12-18 22:08:50] -rw-r--r-- 1 yeti boinc     22116 Dez 18 22:08 stderr.txt
[2025-12-18 22:08:50] HITS file was successfully produced:
[2025-12-18 22:08:50] -rw------- 1 yeti boinc 154573381 Dez 18 22:07 shared/HITS.pool.root.1
[2025-12-18 22:08:50]  *** Contents of shared directory: ***
[2025-12-18 22:08:50] insgesamt 341452
[2025-12-18 22:08:50] -rw-r--r-- 2 yeti boinc 193652489 Dez 18 21:12 ATLAS.root_0
[2025-12-18 22:08:50] -rw-r--r-- 2 yeti boinc     15847 Dez 18 21:12 start_atlas.sh
[2025-12-18 22:08:50] -rw-r--r-- 2 yeti boinc    592406 Dez 18 21:12 input.tar.gz
[2025-12-18 22:08:50] -rw------- 1 yeti boinc 154573381 Dez 18 22:07 HITS.pool.root.1
[2025-12-18 22:08:50] -rw------- 1 yeti boinc    798720 Dez 18 22:08 result.tar.gz
22:08:52 (4032636): run_atlas exited; CPU time 12360.340855
22:08:52 (4032636): called boinc_finish(0)

</stderr_txt>
]]>

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