Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:19:27 (1344954): wrapper (7.7.26015): starting
03:19:27 (1344954): wrapper: running run_atlas (--nthreads 3)
[2025-12-19 03:19:27] Arguments: --nthreads 3
[2025-12-19 03:19:27] Threads: 3
[2025-12-19 03:19:27] Checking for CVMFS
[2025-12-19 03:19:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-19 03:19:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-19 03:19:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-19 03:19:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-19 03:19:28] 2.13.3.0 1229690 554 56972 154161 2 56 28522954 31457281 0 130560 0 357234 99.984 27440 18 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-19 03:19:28] CVMFS is ok
[2025-12-19 03:19:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-19 03:19:28] Checking for apptainer binary...
[2025-12-19 03:19:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-19 03:19:28] Running /usr/bin/apptainer --version
[2025-12-19 03:19:28] apptainer version 1.4.4-1.el9
[2025-12-19 03:19:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-19 03:19:28] testio001
[2025-12-19 03:19:28] apptainer works
[2025-12-19 03:19:28] Set ATHENA_PROC_NUMBER=3
[2025-12-19 03:19:28] Set ATHENA_CORE_NUMBER=3
[2025-12-19 03:19:28] Starting ATLAS job with PandaID=6933049090
[2025-12-19 03:19:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-19 05:22:56]  *** The last 200 lines of the pilot log: ***
[2025-12-19 05:22:56] 2025-12-18 20:21:59,899 | INFO     | monitor loop #557: job 0:6933049090 is in state 'finished'
[2025-12-19 05:22:56] 2025-12-18 20:21:59,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 05:22:56] 2025-12-18 20:22:01,623 | INFO     | time since job start (7343s) is within the limit (174528.0s)
[2025-12-19 05:22:56] 2025-12-18 20:22:02,401 | INFO     | monitor loop #558: job 0:6933049090 is in state 'finished'
[2025-12-19 05:22:56] 2025-12-18 20:22:02,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 05:22:56] 2025-12-18 20:22:03,628 | INFO     | time since job start (7345s) is within the limit (174528.0s)
[2025-12-19 05:22:56] 2025-12-18 20:22:04,904 | INFO     | monitor loop #559: job 0:6933049090 is in state 'finished'
[2025-12-19 05:22:56] 2025-12-18 20:22:04,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-19 05:22:56] 2025-12-18 20:22:05,634 | INFO     | time since job start (7347s) is within the limit (174528.0s)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,913 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-19 05:22:56] 2025-12-18 20:22:06,914 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3651.2185
[2025-12-19 05:22:56] 2025-12-18 20:22:06,914 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6933049090/memory_monitor_summary.json (trf name=prmon)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,915 | INFO     | extracted standard info from prmon json
[2025-12-19 05:22:56] 2025-12-18 20:22:06,915 | INFO     | extracted standard memory fields from prmon json
[2025-12-19 05:22:56] 2025-12-18 20:22:06,915 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-19 05:22:56] 2025-12-18 20:22:06,915 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-19 05:22:56] 2025-12-18 20:22:06,915 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-19 05:22:56] 2025-12-18 20:22:06,916 | INFO     | fitting pss+swap vs Time
[2025-12-19 05:22:56] 2025-12-18 20:22:06,916 | INFO     | sum of square deviations: 522495027.8655464
[2025-12-19 05:22:56] 2025-12-18 20:22:06,916 | INFO     | sum of deviations: -12318950179.932768
[2025-12-19 05:22:56] 2025-12-18 20:22:06,916 | INFO     | mean x: 1766085600.0336134
[2025-12-19 05:22:56] 2025-12-18 20:22:06,916 | INFO     | mean y: 2437247.9831932774
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | intersect: 41641724437.35201
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | chi2: 2.2276821393855752
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | sum of square deviations: 459360180.3596492
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | sum of deviations: -10859586210.473686
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | mean x: 1766085447.5350878
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | mean y: 2440778.3684210526
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | intersect: 41753898550.686455
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | chi2: 2.2274149831334564
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | current chi2=2.2274149831334564 (change=0.011992566057584038 %)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,917 | INFO     | right removable region: 113
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | sum of square deviations: 459357740.3596492
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | sum of deviations: -34772757824.98242
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | mean x: 1766085752.5350878
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | mean y: 2490856.245614035
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | intersect: 133692786622.18361
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | chi2: 0.2369434837995517
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | current chi2=0.2369434837995517 (change=89.3636762799156 %)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | sum of square deviations: 401522877.85321116
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | sum of deviations: -31082318121.522934
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | mean x: 1766085905.0366971
[2025-12-19 05:22:56] 2025-12-18 20:22:06,918 | INFO     | mean y: 2481072.880733945
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | intersect: 136717091766.51236
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | chi2: 0.2341926519077872
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | current chi2=0.2341926519077872 (change=1.1609654115205126 %)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | left removable region: 20
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | sum of square deviations: 249377653.82795686
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | sum of deviations: -20041207547.946236
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | mean x: 1766086027.0430107
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | mean y: 2459087.2365591396
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | intersect: 141933767174.348
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | chi2: 0.21433844185532663
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | current memory leak: -80.36 B/s (using 93 data points, chi2=0.21)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,919 | INFO     | could have reported an average CPU frequency of 3619 MHz (7 samples)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | ..............................
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | . Timing measurements:
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | . get job = 0 s
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | . initial setup = 5 s
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | . payload setup = 4 s
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | . stage-in = 0 s
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | . payload execution = 7241 s
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | . stage-out = 0 s
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | . log creation = 0 s
[2025-12-19 05:22:56] 2025-12-18 20:22:06,920 | INFO     | ..............................
[2025-12-19 05:22:56] 2025-12-18 20:22:06,955 | INFO     | 
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | job summary report
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | --------------------------------------------------
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | PanDA job id: 6933049090
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | task id: 47929408
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | errors: (none)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | pilot state: finished 
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | transexitcode: 0
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | exeerrorcode: 0
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | exeerrordiag: 
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | exitcode: 0
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | exitmsg: OK
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | cpuconsumptiontime: 19226 s
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | nevents: 400
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | neventsw: 0
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | pid: 1355171
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | pgrp: 1355171
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | corecount: 3
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | event service: False
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | sizes: {0: 2284039, 3: 2284301, 11: 2284329, 7249: 2311667, 7250: 2320665, 7251: 2320721, 7335: 2321043}
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | --------------------------------------------------
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | 
[2025-12-19 05:22:56] 2025-12-18 20:22:06,956 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-12-19 05:22:56] 2025-12-18 20:22:06,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-19 05:22:56] 2025-12-18 20:22:06,967 | INFO     | job 6933049090 has completed (purged errors)
[2025-12-19 05:22:56] 2025-12-18 20:22:06,968 | INFO     | overall cleanup function is called
[2025-12-19 05:22:56] 2025-12-18 20:22:07,973 | INFO     | --- collectZombieJob: --- 10, [1355171]
[2025-12-19 05:22:56] 2025-12-18 20:22:07,973 | INFO     | zombie collector waiting for pid 1355171
[2025-12-19 05:22:56] 2025-12-18 20:22:07,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-19 05:22:56] 2025-12-18 20:22:07,973 | INFO     | collected zombie processes
[2025-12-19 05:22:56] 2025-12-18 20:22:07,973 | INFO     | will attempt to kill all subprocesses of pid=1355171
[2025-12-19 05:22:56] 2025-12-18 20:22:08,005 | INFO     | process IDs to be killed: [1355171] (in reverse order)
[2025-12-19 05:22:56] 2025-12-18 20:22:08,026 | WARNING  | found no corresponding commands to process id(s)
[2025-12-19 05:22:56] 2025-12-18 20:22:08,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-19 05:22:56] 2025-12-18 20:22:08,028 | INFO     | did not find any defunct processes belonging to 1355171
[2025-12-19 05:22:56] 2025-12-18 20:22:08,029 | INFO     | did not find any defunct processes belonging to 1355171
[2025-12-19 05:22:56] 2025-12-18 20:22:08,029 | INFO     | ready for new job
[2025-12-19 05:22:56] 2025-12-18 20:22:08,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-19 05:22:56] 2025-12-18 20:22:08,030 | INFO     | ***************************************
[2025-12-19 05:22:56] 2025-12-18 20:22:08,030 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-19 05:22:56] 2025-12-18 20:22:08,030 | INFO     | ***************************************
[2025-12-19 05:22:56] 2025-12-18 20:22:08,030 | INFO     | 
[2025-12-19 05:22:56] 2025-12-18 20:22:08,030 | INFO     | architecture information:
[2025-12-19 05:22:56] 2025-12-18 20:22:08,030 | INFO     | executing command: cat /etc/os-release
[2025-12-19 05:22:56] 2025-12-18 20:22:08,037 | INFO     | cat /etc/os-release:
[2025-12-19 05:22:56] NAME="CentOS Linux"
[2025-12-19 05:22:56] VERSION="7 (Core)"
[2025-12-19 05:22:56] ID="centos"
[2025-12-19 05:22:56] ID_LIKE="rhel fedora"
[2025-12-19 05:22:56] VERSION_ID="7"
[2025-12-19 05:22:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-19 05:22:56] ANSI_COLOR="0;31"
[2025-12-19 05:22:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-19 05:22:56] HOME_URL="https://www.centos.org/"
[2025-12-19 05:22:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-19 05:22:56] 
[2025-12-19 05:22:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-19 05:22:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-19 05:22:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-19 05:22:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-19 05:22:56] 
[2025-12-19 05:22:56] 2025-12-18 20:22:08,037 | INFO     | ***************************************
[2025-12-19 05:22:56] 2025-12-18 20:22:08,540 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-12-19 05:22:56] 2025-12-18 20:22:08,549 | INFO     | sufficient remaining disk space (114436341760 B)
[2025-12-19 05:22:56] 2025-12-18 20:22:08,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-19 05:22:56] 2025-12-18 20:22:08,549 | INFO     | current server update state: UPDATING_FINAL
[2025-12-19 05:22:56] 2025-12-18 20:22:08,550 | INFO     | update_server=False
[2025-12-19 05:22:56] 2025-12-18 20:22:08,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-19 05:22:56] 2025-12-18 20:22:08,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-19 05:22:56] 2025-12-18 20:22:08,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-19 05:22:56] 2025-12-18 20:22:08,550 | INFO     | aborting loop
[2025-12-19 05:22:56] 2025-12-18 20:22:09,467 | INFO     | all data control threads have been joined
[2025-12-19 05:22:56] 2025-12-18 20:22:09,554 | INFO     | [job] retrieve thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:09,555 | INFO     | [job] job monitor thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:09,555 | INFO     | [job] queue monitor thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:09,702 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-19 05:22:56] 2025-12-18 20:22:09,708 | INFO     | [payload] failed_post thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:09,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-19 05:22:56] 2025-12-18 20:22:09,828 | INFO     | all payload control threads have been joined
[2025-12-19 05:22:56] 2025-12-18 20:22:09,947 | INFO     | [payload] validate_pre thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:10,143 | INFO     | all job control threads have been joined
[2025-12-19 05:22:56] 2025-12-18 20:22:10,178 | INFO     | [data] copytool_in thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:10,343 | INFO     | [payload] validate_post thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:10,472 | INFO     | [data] control thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:10,783 | INFO     | [payload] execute_payloads thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:10,832 | INFO     | [payload] control thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:10,879 | INFO     | [job] validate thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:10,896 | INFO     | [job] create_data_payload thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:11,147 | INFO     | [job] control thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:11,707 | INFO     | [data] copytool_out thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:13,766 | INFO     | [data] queue_monitor thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:19,201 | INFO     | job.realtimelogging is not enabled
[2025-12-19 05:22:56] 2025-12-18 20:22:20,206 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-19 05:22:56] 2025-12-18 20:22:38,730 | INFO     | PID=1348625 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-19 05:22:56] 2025-12-18 20:22:38,730 | INFO     | found 0 job(s) in 20 queues
[2025-12-19 05:22:56] 2025-12-18 20:22:38,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-19 05:22:56] 2025-12-18 20:22:38,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-19 05:22:56] 2025-12-18 20:22:50,732 | INFO     | [monitor] cgroup control has ended
[2025-12-19 05:22:56] 2025-12-18 20:22:51,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140233227974464)>', '<ExcThread(monitor, started 140232678692608)>']
[2025-12-19 05:22:56] 2025-12-18 20:22:51,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-19 05:22:56] 2025-12-18 20:22:51,786 | INFO     | [monitor] control thread has ended
[2025-12-19 05:22:56] 2025-12-18 20:22:56,366 | INFO     | all workflow threads have been joined
[2025-12-19 05:22:56] 2025-12-18 20:22:56,366 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-19 05:22:56] 2025-12-18 20:22:56,366 | INFO     | traces error code: 0
[2025-12-19 05:22:56] 2025-12-18 20:22:56,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-19 05:22:56] 2025-12-18 20:22:56,426 [wrapper] ==== pilot stdout END ====
[2025-12-19 05:22:56] 2025-12-18 20:22:56,428 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-19 05:22:56] 2025-12-18 20:22:56,430 [wrapper] pilotpid: 1348625
[2025-12-19 05:22:56] 2025-12-18 20:22:56,431 [wrapper] Pilot exit status: 0
[2025-12-19 05:22:56] 2025-12-18 20:22:56,437 [wrapper] pandaids: 6933049090
[2025-12-19 05:22:56] 2025-12-18 20:22:56,448 [wrapper] cleanup supervisor_pilot 1369395 1348626
[2025-12-19 05:22:56] 2025-12-18 20:22:56,450 [wrapper] Test setup, not cleaning
[2025-12-19 05:22:56] 2025-12-18 20:22:56,452 [wrapper] apfmon messages muted
[2025-12-19 05:22:56] 2025-12-18 20:22:56,453 [wrapper] ==== wrapper stdout END ====
[2025-12-19 05:22:56] 2025-12-18 20:22:56,455 [wrapper] ==== wrapper stderr END ====
[2025-12-19 05:22:56]  *** Error codes and diagnostics ***
[2025-12-19 05:22:56]     "exeErrorCode": 0,
[2025-12-19 05:22:56]     "exeErrorDiag": "",
[2025-12-19 05:22:56]     "pilotErrorCode": 0,
[2025-12-19 05:22:56]     "pilotErrorDiag": "",
[2025-12-19 05:22:56]  *** Listing of results directory ***
[2025-12-19 05:22:56] total 432756
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc    579449 Dec 18 12:11 pilot3.tar.gz
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc      5112 Dec 18 12:11 queuedata.json
[2025-12-19 05:22:56] -rwx------. 1 boinc boinc     36322 Dec 18 12:12 runpilot2-wrapper.sh
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc       100 Dec 19 03:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-19 05:22:56] -rwxr-xr-x. 1 boinc boinc      7986 Dec 19 03:19 run_atlas
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc       105 Dec 19 03:19 job.xml
[2025-12-19 05:22:56] -rw-r--r--. 2 boinc boinc 250656728 Dec 19 03:19 EVNT.47929406._000012.pool.root.1
[2025-12-19 05:22:56] -rw-r--r--. 2 boinc boinc     15847 Dec 19 03:19 start_atlas.sh
[2025-12-19 05:22:56] drwxrwx--x. 2 boinc boinc        68 Dec 19 03:19 shared
[2025-12-19 05:22:56] -rw-r--r--. 2 boinc boinc    592412 Dec 19 03:19 input.tar.gz
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc      9312 Dec 19 03:19 init_data.xml
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc         0 Dec 19 03:19 boinc_lockfile
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc      2574 Dec 19 03:19 pandaJob.out
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc    988872 Dec 19 03:19 agis_schedconf.cvmfs.json
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc   1516240 Dec 19 03:19 agis_ddmendpoints.agis.ALL.json
[2025-12-19 05:22:56] drwx------. 5 boinc boinc      4096 Dec 19 03:19 pilot3
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc 185938778 Dec 19 05:20 HITS.47929408._000298.pool.root.1
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc      1018 Dec 19 05:20 memory_monitor_summary.json
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc    294327 Dec 19 05:20 log.47929408._000298.job.log.tgz.1
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc       529 Dec 19 05:20 boinc_task_state.xml
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc      7766 Dec 19 05:22 heartbeat.json
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc        95 Dec 19 05:22 pilot_heartbeat.json
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc      8192 Dec 19 05:22 boinc_mmap_file
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc        27 Dec 19 05:22 wrapper_checkpoint.txt
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc      4821 Dec 19 05:22 pilotlog.txt
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc   1027133 Dec 19 05:22 log.47929408._000298.job.log.1
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc       357 Dec 19 05:22 output.list
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc       620 Dec 19 05:22 runtime_log
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc   1341440 Dec 19 05:22 result.tar.gz
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc      8775 Dec 19 05:22 runtime_log.err
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc       643 Dec 19 05:22 R03KDmvcJq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeGdKDm49HJLm.diag
[2025-12-19 05:22:56] -rw-r--r--. 1 boinc boinc     21056 Dec 19 05:22 stderr.txt
[2025-12-19 05:22:56] HITS file was successfully produced:
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc 185938778 Dec 19 05:20 shared/HITS.pool.root.1
[2025-12-19 05:22:56]  *** Contents of shared directory: ***
[2025-12-19 05:22:56] total 428276
[2025-12-19 05:22:56] -rw-r--r--. 2 boinc boinc 250656728 Dec 19 03:19 ATLAS.root_0
[2025-12-19 05:22:56] -rw-r--r--. 2 boinc boinc     15847 Dec 19 03:19 start_atlas.sh
[2025-12-19 05:22:56] -rw-r--r--. 2 boinc boinc    592412 Dec 19 03:19 input.tar.gz
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc 185938778 Dec 19 05:20 HITS.pool.root.1
[2025-12-19 05:22:56] -rw-------. 1 boinc boinc   1341440 Dec 19 05:22 result.tar.gz
05:22:58 (1344954): run_atlas exited; CPU time 19253.518653
05:22:58 (1344954): called boinc_finish(0)

</stderr_txt>
]]>

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