Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:41:29 (57347): wrapper (7.7.26015): starting
16:41:29 (57347): wrapper: running run_atlas (--nthreads 4)
[2025-12-18 16:41:29] Arguments: --nthreads 4
[2025-12-18 16:41:29] Threads: 4
[2025-12-18 16:41:29] Checking for CVMFS
[2025-12-18 16:41:29] No cvmfs_config command found, will try listing directly
[2025-12-18 16:41:29] CVMFS is ok
[2025-12-18 16:41:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 16:41:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 16:41:29] Further information can be found at the LHC@home message board.
[2025-12-18 16:41:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 16:41:29] Checking for apptainer binary...
[2025-12-18 16:41:29] which: no apptainer in ((null))
[2025-12-18 16:41:29] apptainer is not installed, using version from CVMFS
[2025-12-18 16:41:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 16:41:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-18 16:41:29] apptainer works
[2025-12-18 16:41:29] Set ATHENA_PROC_NUMBER=4
[2025-12-18 16:41:29] Set ATHENA_CORE_NUMBER=4
[2025-12-18 16:41:29] Starting ATLAS job with PandaID=6932714243
[2025-12-18 16:41:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 19:49:51]  *** The last 200 lines of the pilot log: ***
[2025-12-18 19:49:51] 2025-12-18 18:47:56,275 | INFO     | executing command: lscpu
[2025-12-18 19:49:51] 2025-12-18 18:47:56,329 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-18 19:49:51] 2025-12-18 18:47:56,848 | INFO     | time since job start (11176s) is within the limit (174528.0s)
[2025-12-18 19:49:51] 2025-12-18 18:47:57,493 | INFO     | monitor loop #810: job 0:6932714243 is in state 'finished'
[2025-12-18 19:49:51] 2025-12-18 18:47:57,493 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 19:49:51] 2025-12-18 18:47:58,854 | INFO     | time since job start (11178s) is within the limit (174528.0s)
[2025-12-18 19:49:51] 2025-12-18 18:47:59,997 | INFO     | monitor loop #811: job 0:6932714243 is in state 'finished'
[2025-12-18 19:49:51] 2025-12-18 18:47:59,997 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,345 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-18 19:49:51] 2025-12-18 18:48:00,355 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2757.768765625
[2025-12-18 19:49:51] 2025-12-18 18:48:00,368 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6932714243/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,369 | INFO     | extracted standard info from prmon json
[2025-12-18 19:49:51] 2025-12-18 18:48:00,369 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 19:49:51] 2025-12-18 18:48:00,369 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 19:49:51] 2025-12-18 18:48:00,370 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 19:49:51] 2025-12-18 18:48:00,370 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 19:49:51] 2025-12-18 18:48:00,374 | INFO     | fitting pss+swap vs Time
[2025-12-18 19:49:51] 2025-12-18 18:48:00,375 | INFO     | sum of square deviations: 1900284932.0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,376 | INFO     | sum of deviations: -5817080353.000002
[2025-12-18 19:49:51] 2025-12-18 18:48:00,376 | INFO     | mean x: 1766078079.0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,376 | INFO     | mean y: 2342077.5901639345
[2025-12-18 19:49:51] 2025-12-18 18:48:00,376 | INFO     | intersect: 5408593488.741639
[2025-12-18 19:49:51] 2025-12-18 18:48:00,377 | INFO     | chi2: 1.2970625540181113
[2025-12-18 19:49:51] 2025-12-18 18:48:00,377 | INFO     | sum of square deviations: 1748737904.5
[2025-12-18 19:49:51] 2025-12-18 18:48:00,378 | INFO     | sum of deviations: -5496615175.5
[2025-12-18 19:49:51] 2025-12-18 18:48:00,378 | INFO     | mean x: 1766077926.5
[2025-12-18 19:49:51] 2025-12-18 18:48:00,378 | INFO     | mean y: 2342400.1516853934
[2025-12-18 19:49:51] 2025-12-18 18:48:00,378 | INFO     | intersect: 5553460556.243254
[2025-12-18 19:49:51] 2025-12-18 18:48:00,379 | INFO     | chi2: 1.2967217271973481
[2025-12-18 19:49:51] 2025-12-18 18:48:00,379 | INFO     | current chi2=1.2967217271973481 (change=0.02627682217078613 %)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,379 | INFO     | right removable region: 177
[2025-12-18 19:49:51] 2025-12-18 18:48:00,379 | INFO     | sum of square deviations: 1748737904.5
[2025-12-18 19:49:51] 2025-12-18 18:48:00,380 | INFO     | sum of deviations: -24463377109.000008
[2025-12-18 19:49:51] 2025-12-18 18:48:00,380 | INFO     | mean x: 1766078231.5
[2025-12-18 19:49:51] 2025-12-18 18:48:00,380 | INFO     | mean y: 2360488.2921348317
[2025-12-18 19:49:51] 2025-12-18 18:48:00,380 | INFO     | intersect: 24708314233.56381
[2025-12-18 19:49:51] 2025-12-18 18:48:00,381 | INFO     | chi2: 0.10623824572092547
[2025-12-18 19:49:51] 2025-12-18 18:48:00,381 | INFO     | current chi2=0.10623824572092547 (change=91.80931980560115 %)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,381 | INFO     | sum of square deviations: 1605470102.0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,382 | INFO     | sum of deviations: -19574340630.000008
[2025-12-18 19:49:51] 2025-12-18 18:48:00,382 | INFO     | mean x: 1766078384.0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,383 | INFO     | mean y: 2355296.832369942
[2025-12-18 19:49:51] 2025-12-18 18:48:00,383 | INFO     | intersect: 21534877032.75938
[2025-12-18 19:49:51] 2025-12-18 18:48:00,383 | INFO     | chi2: 0.09495080062964899
[2025-12-18 19:49:51] 2025-12-18 18:48:00,383 | INFO     | current chi2=0.09495080062964899 (change=10.624653122499012 %)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,383 | INFO     | left removable region: 20
[2025-12-18 19:49:51] 2025-12-18 18:48:00,384 | INFO     | sum of square deviations: 1199940638.0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,384 | INFO     | sum of deviations: -11349186701.0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,385 | INFO     | mean x: 1766078506.0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,385 | INFO     | mean y: 2346853.2165605095
[2025-12-18 19:49:51] 2025-12-18 18:48:00,385 | INFO     | intersect: 16706135406.14425
[2025-12-18 19:49:51] 2025-12-18 18:48:00,385 | INFO     | chi2: 0.0779729995247709
[2025-12-18 19:49:51] 2025-12-18 18:48:00,385 | INFO     | current memory leak: -9.46 B/s (using 157 data points, chi2=0.08)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,386 | INFO     | could have reported an average CPU frequency of 2656 MHz (10 samples)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,386 | INFO     | ..............................
[2025-12-18 19:49:51] 2025-12-18 18:48:00,386 | INFO     | . Timing measurements:
[2025-12-18 19:49:51] 2025-12-18 18:48:00,386 | INFO     | . get job = 0 s
[2025-12-18 19:49:51] 2025-12-18 18:48:00,386 | INFO     | . initial setup = 1 s
[2025-12-18 19:49:51] 2025-12-18 18:48:00,386 | INFO     | . payload setup = 6 s
[2025-12-18 19:49:51] 2025-12-18 18:48:00,386 | INFO     | . stage-in = 0 s
[2025-12-18 19:49:51] 2025-12-18 18:48:00,386 | INFO     | . payload execution = 11145 s
[2025-12-18 19:49:51] 2025-12-18 18:48:00,387 | INFO     | . stage-out = 1 s
[2025-12-18 19:49:51] 2025-12-18 18:48:00,387 | INFO     | . log creation = 0 s
[2025-12-18 19:49:51] 2025-12-18 18:48:00,387 | INFO     | ..............................
[2025-12-18 19:49:51] 2025-12-18 18:48:00,487 | INFO     | 
[2025-12-18 19:49:51] 2025-12-18 18:48:00,487 | INFO     | job summary report
[2025-12-18 19:49:51] 2025-12-18 18:48:00,487 | INFO     | --------------------------------------------------
[2025-12-18 19:49:51] 2025-12-18 18:48:00,487 | INFO     | PanDA job id: 6932714243
[2025-12-18 19:49:51] 2025-12-18 18:48:00,487 | INFO     | task id: 47886933
[2025-12-18 19:49:51] 2025-12-18 18:48:00,487 | INFO     | errors: (none)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,487 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | pilot state: finished 
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | transexitcode: 0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | exeerrorcode: 0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | exeerrordiag: 
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | exitcode: 0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | exitmsg: OK
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | cpuconsumptiontime: 42712 s
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | nevents: 400
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | neventsw: 0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | pid: 68223
[2025-12-18 19:49:51] 2025-12-18 18:48:00,488 | INFO     | pgrp: 68223
[2025-12-18 19:49:51] 2025-12-18 18:48:00,489 | INFO     | corecount: 4
[2025-12-18 19:49:51] 2025-12-18 18:48:00,489 | INFO     | event service: False
[2025-12-18 19:49:51] 2025-12-18 18:48:00,489 | INFO     | sizes: {0: 2283809, 1: 2284008, 5: 2284270, 11: 2284326, 11155: 2313594, 11156: 2322798, 11164: 2322936}
[2025-12-18 19:49:51] 2025-12-18 18:48:00,489 | INFO     | --------------------------------------------------
[2025-12-18 19:49:51] 2025-12-18 18:48:00,489 | INFO     | 
[2025-12-18 19:49:51] 2025-12-18 18:48:00,489 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-12-18 19:49:51] 2025-12-18 18:48:00,510 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,511 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,511 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,511 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,511 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,512 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 19:49:51] 2025-12-18 18:48:00,513 | INFO     | job 6932714243 has completed (purged errors)
[2025-12-18 19:49:51] 2025-12-18 18:48:00,513 | INFO     | overall cleanup function is called
[2025-12-18 19:49:51] 2025-12-18 18:48:01,520 | INFO     | --- collectZombieJob: --- 10, [68223]
[2025-12-18 19:49:51] 2025-12-18 18:48:01,521 | INFO     | zombie collector waiting for pid 68223
[2025-12-18 19:49:51] 2025-12-18 18:48:01,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 19:49:51] 2025-12-18 18:48:01,521 | INFO     | collected zombie processes
[2025-12-18 19:49:51] 2025-12-18 18:48:01,521 | INFO     | will attempt to kill all subprocesses of pid=68223
[2025-12-18 19:49:51] 2025-12-18 18:48:01,895 | INFO     | process IDs to be killed: [68223] (in reverse order)
[2025-12-18 19:49:51] 2025-12-18 18:48:02,013 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 19:49:51] 2025-12-18 18:48:02,013 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 19:49:51] 2025-12-18 18:48:02,027 | INFO     | did not find any defunct processes belonging to 68223
[2025-12-18 19:49:51] 2025-12-18 18:48:02,040 | INFO     | did not find any defunct processes belonging to 68223
[2025-12-18 19:49:51] 2025-12-18 18:48:02,040 | INFO     | ready for new job
[2025-12-18 19:49:51] 2025-12-18 18:48:02,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 19:49:51] 2025-12-18 18:48:02,043 | INFO     | ***************************************
[2025-12-18 19:49:51] 2025-12-18 18:48:02,043 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 19:49:51] 2025-12-18 18:48:02,043 | INFO     | ***************************************
[2025-12-18 19:49:51] 2025-12-18 18:48:02,043 | INFO     | 
[2025-12-18 19:49:51] 2025-12-18 18:48:02,047 | INFO     | architecture information:
[2025-12-18 19:49:51] 2025-12-18 18:48:02,047 | INFO     | executing command: cat /etc/os-release
[2025-12-18 19:49:51] 2025-12-18 18:48:02,062 | INFO     | cat /etc/os-release:
[2025-12-18 19:49:51] NAME="CentOS Linux"
[2025-12-18 19:49:51] VERSION="7 (Core)"
[2025-12-18 19:49:51] ID="centos"
[2025-12-18 19:49:51] ID_LIKE="rhel fedora"
[2025-12-18 19:49:51] VERSION_ID="7"
[2025-12-18 19:49:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 19:49:51] ANSI_COLOR="0;31"
[2025-12-18 19:49:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 19:49:51] HOME_URL="https://www.centos.org/"
[2025-12-18 19:49:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 19:49:51] 
[2025-12-18 19:49:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 19:49:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 19:49:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 19:49:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 19:49:51] 
[2025-12-18 19:49:51] 2025-12-18 18:48:02,063 | INFO     | ***************************************
[2025-12-18 19:49:51] 2025-12-18 18:48:02,566 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-12-18 19:49:51] 2025-12-18 18:48:02,582 | INFO     | sufficient remaining disk space (666224295936 B)
[2025-12-18 19:49:51] 2025-12-18 18:48:02,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 19:49:51] 2025-12-18 18:48:02,583 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 19:49:51] 2025-12-18 18:48:02,583 | INFO     | update_server=False
[2025-12-18 19:49:51] 2025-12-18 18:48:02,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 19:49:51] 2025-12-18 18:48:02,668 | INFO     | all data control threads have been joined
[2025-12-18 19:49:51] 2025-12-18 18:48:02,689 | INFO     | all payload control threads have been joined
[2025-12-18 19:49:51] 2025-12-18 18:48:03,175 | INFO     | all job control threads have been joined
[2025-12-18 19:49:51] 2025-12-18 18:48:03,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 19:49:51] 2025-12-18 18:48:03,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 19:49:51] 2025-12-18 18:48:03,505 | INFO     | aborting loop
[2025-12-18 19:49:51] 2025-12-18 18:48:03,588 | INFO     | [job] retrieve thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:03,674 | INFO     | [data] control thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:03,694 | INFO     | [payload] control thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:03,701 | INFO     | [payload] validate_post thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:03,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 19:49:51] 2025-12-18 18:48:04,021 | INFO     | [payload] failed_post thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:04,180 | INFO     | [job] control thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:04,422 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:04,449 | INFO     | [job] validate thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:04,510 | INFO     | [job] job monitor thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:04,546 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:04,848 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:04,852 | INFO     | [data] copytool_in thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:05,368 | INFO     | [data] copytool_out thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:05,498 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 19:49:51] 2025-12-18 18:48:06,503 | INFO     | [job] queue monitor thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:07,879 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:13,257 | INFO     | job.realtimelogging is not enabled
[2025-12-18 19:49:51] 2025-12-18 18:48:14,258 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 19:49:51] 2025-12-18 18:48:32,422 | INFO     | PID=61115 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-18 19:49:51] 2025-12-18 18:48:32,422 | INFO     | .. there are 4 such processes running
[2025-12-18 19:49:51] 2025-12-18 18:48:32,423 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 19:49:51] 2025-12-18 18:48:32,423 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 19:49:51] 2025-12-18 18:48:32,423 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 19:49:51] 2025-12-18 18:48:57,953 | INFO     | [monitor] cgroup control has ended
[2025-12-18 19:49:51] 2025-12-18 18:48:58,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23370983679808)>', '<ExcThread(monitor, started 23370743641856)>']
[2025-12-18 19:49:51] 2025-12-18 18:48:58,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 19:49:51] 2025-12-18 18:48:58,537 | INFO     | [monitor] control thread has ended
[2025-12-18 19:49:51] 2025-12-18 18:49:03,088 | INFO     | all workflow threads have been joined
[2025-12-18 19:49:51] 2025-12-18 18:49:03,088 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 19:49:51] 2025-12-18 18:49:03,088 | INFO     | traces error code: 0
[2025-12-18 19:49:51] 2025-12-18 18:49:03,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 19:49:51] 2025-12-18 18:49:03,268 [wrapper] ==== pilot stdout END ====
[2025-12-18 19:49:51] 2025-12-18 18:49:03,271 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 19:49:51] 2025-12-18 18:49:03,274 [wrapper] pilotpid: 61115
[2025-12-18 19:49:51] 2025-12-18 18:49:03,277 [wrapper] Pilot exit status: 0
[2025-12-18 19:49:51] 2025-12-18 18:49:03,287 [wrapper] pandaids: 6932714243
[2025-12-18 19:49:51] 2025-12-18 18:49:03,361 [wrapper] cleanup supervisor_pilot  254171 61116
[2025-12-18 19:49:51] 2025-12-18 18:49:03,364 [wrapper] Test setup, not cleaning
[2025-12-18 19:49:51] 2025-12-18 18:49:03,367 [wrapper] apfmon messages muted
[2025-12-18 19:49:51] 2025-12-18 18:49:03,370 [wrapper] ==== wrapper stdout END ====
[2025-12-18 19:49:51] 2025-12-18 18:49:03,373 [wrapper] ==== wrapper stderr END ====
[2025-12-18 19:49:51]  *** Error codes and diagnostics ***
[2025-12-18 19:49:51]     "exeErrorCode": 0,
[2025-12-18 19:49:51]     "exeErrorDiag": "",
[2025-12-18 19:49:51]     "pilotErrorCode": 0,
[2025-12-18 19:49:51]     "pilotErrorDiag": "",
[2025-12-18 19:49:51]  *** Listing of results directory ***
[2025-12-18 19:49:51] total 342024
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc      5112 Dec 18 01:45 queuedata.json
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc    579449 Dec 18 01:45 pilot3.tar.gz
[2025-12-18 19:49:51] -rwx------ 1 boinc boinc     36322 Dec 18 01:45 runpilot2-wrapper.sh
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc       100 Dec 18 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 19:49:51] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 16:41 run_atlas
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc       105 Dec 18 16:41 job.xml
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc      6639 Dec 18 16:41 init_data.xml
[2025-12-18 19:49:51] -rw-r--r-- 2 boinc boinc 191142382 Dec 18 16:41 EVNT.47886929._000534.pool.root.1
[2025-12-18 19:49:51] -rw-r--r-- 2 boinc boinc     15847 Dec 18 16:41 start_atlas.sh
[2025-12-18 19:49:51] drwxrwx--x 2 boinc boinc      4096 Dec 18 16:41 shared
[2025-12-18 19:49:51] -rw-r--r-- 2 boinc boinc    592396 Dec 18 16:41 input.tar.gz
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc         0 Dec 18 16:41 boinc_lockfile
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc      2515 Dec 18 16:41 pandaJob.out
[2025-12-18 19:49:51] -rw------- 1 boinc boinc    988125 Dec 18 16:41 agis_schedconf.cvmfs.json
[2025-12-18 19:49:51] drwx------ 5 boinc boinc      4096 Dec 18 16:41 pilot3
[2025-12-18 19:49:51] -rw------- 1 boinc boinc 151261023 Dec 18 19:47 HITS.47886933._012932.pool.root.1
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc       529 Dec 18 19:47 boinc_task_state.xml
[2025-12-18 19:49:51] -rw------- 1 boinc boinc        95 Dec 18 19:47 pilot_heartbeat.json
[2025-12-18 19:49:51] -rw------- 1 boinc boinc      1042 Dec 18 19:47 memory_monitor_summary.json
[2025-12-18 19:49:51] -rw------- 1 boinc boinc   1516240 Dec 18 19:47 agis_ddmendpoints.agis.ALL.json
[2025-12-18 19:49:51] -rw------- 1 boinc boinc    375630 Dec 18 19:47 log.47886933._012932.job.log.tgz.1
[2025-12-18 19:49:51] -rw------- 1 boinc boinc      7838 Dec 18 19:48 heartbeat.json
[2025-12-18 19:49:51] -rw------- 1 boinc boinc      4903 Dec 18 19:49 pilotlog.txt
[2025-12-18 19:49:51] -rw------- 1 boinc boinc   1583986 Dec 18 19:49 log.47886933._012932.job.log.1
[2025-12-18 19:49:51] -rw------- 1 boinc boinc       357 Dec 18 19:49 output.list
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc       620 Dec 18 19:49 runtime_log
[2025-12-18 19:49:51] -rw------- 1 boinc boinc   1976320 Dec 18 19:49 result.tar.gz
[2025-12-18 19:49:51] -rw------- 1 boinc boinc       665 Dec 18 19:49 v8uNDmwJHq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm70cKDmYojGqm.diag
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc      9206 Dec 18 19:49 runtime_log.err
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc        26 Dec 18 19:49 wrapper_checkpoint.txt
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc      8192 Dec 18 19:49 boinc_mmap_file
[2025-12-18 19:49:51] -rw-r--r-- 1 boinc boinc     21115 Dec 18 19:49 stderr.txt
[2025-12-18 19:49:51] HITS file was successfully produced:
[2025-12-18 19:49:51] -rw------- 1 boinc boinc 151261023 Dec 18 19:47 shared/HITS.pool.root.1
[2025-12-18 19:49:51]  *** Contents of shared directory: ***
[2025-12-18 19:49:51] total 336916
[2025-12-18 19:49:51] -rw-r--r-- 2 boinc boinc 191142382 Dec 18 16:41 ATLAS.root_0
[2025-12-18 19:49:51] -rw-r--r-- 2 boinc boinc     15847 Dec 18 16:41 start_atlas.sh
[2025-12-18 19:49:51] -rw-r--r-- 2 boinc boinc    592396 Dec 18 16:41 input.tar.gz
[2025-12-18 19:49:51] -rw------- 1 boinc boinc 151261023 Dec 18 19:47 HITS.pool.root.1
[2025-12-18 19:49:51] -rw------- 1 boinc boinc   1976320 Dec 18 19:49 result.tar.gz
19:49:53 (57347): run_atlas exited; CPU time 43234.035162
19:49:53 (57347): called boinc_finish(0)

</stderr_txt>
]]>

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