Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:46:37 (3956): wrapper (7.7.26015): starting
05:46:37 (3956): wrapper: running run_atlas (--nthreads 8)
[2025-12-18 05:46:37] Arguments: --nthreads 8
[2025-12-18 05:46:37] Threads: 8
[2025-12-18 05:46:37] Checking for CVMFS
[2025-12-18 05:46:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 05:46:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 05:46:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 05:46:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 05:46:37] 2.11.2.0 18601 133444 140448 154147 1 57 10521802 18432001 1833 130560 0 94772001 99.985 4965926 31739 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-18 05:46:37] CVMFS is ok
[2025-12-18 05:46:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 05:46:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 05:46:37] Further information can be found at the LHC@home message board.
[2025-12-18 05:46:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 05:46:37] Checking for apptainer binary...
[2025-12-18 05:46:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 05:46:37] Running /usr/bin/apptainer --version
[2025-12-18 05:46:37] apptainer version 1.3.2-1.el7
[2025-12-18 05:46:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 05:46:38] c-206-13.aglt2.org
[2025-12-18 05:46:38] apptainer works
[2025-12-18 05:46:38] Set ATHENA_PROC_NUMBER=8
[2025-12-18 05:46:38] Set ATHENA_CORE_NUMBER=8
[2025-12-18 05:46:38] Starting ATLAS job with PandaID=6932712510
[2025-12-18 05:46:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 09:01:31]  *** The last 200 lines of the pilot log: ***
[2025-12-18 09:01:31] 2025-12-18 14:00:54,617 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-18 09:01:31] 2025-12-18 14:00:55,887 | INFO     | monitor loop #836: job 0:6932712510 is in state 'finished'
[2025-12-18 09:01:31] 2025-12-18 14:00:55,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 09:01:31] 2025-12-18 14:00:56,355 | INFO     | time since job start (11648s) is within the limit (174528.0s)
[2025-12-18 09:01:31] 2025-12-18 14:00:56,355 | INFO     | 11650s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-18 09:01:31] 2025-12-18 14:00:58,361 | INFO     | time since job start (11650s) is within the limit (174528.0s)
[2025-12-18 09:01:31] 2025-12-18 14:00:58,389 | INFO     | monitor loop #837: job 0:6932712510 is in state 'finished'
[2025-12-18 09:01:31] 2025-12-18 14:00:58,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-18 09:01:31] 2025-12-18 14:00:58,751 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-18 09:01:31] 2025-12-18 14:00:58,754 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2339.25
[2025-12-18 09:01:31] 2025-12-18 14:00:58,757 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6932712510/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 09:01:31] 2025-12-18 14:00:58,757 | INFO     | extracted standard info from prmon json
[2025-12-18 09:01:31] 2025-12-18 14:00:58,758 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 09:01:31] 2025-12-18 14:00:58,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 09:01:31] 2025-12-18 14:00:58,758 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 09:01:31] 2025-12-18 14:00:58,758 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 09:01:31] 2025-12-18 14:00:58,761 | INFO     | fitting pss+swap vs Time
[2025-12-18 09:01:31] 2025-12-18 14:00:58,761 | INFO     | sum of square deviations: 2160561440.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,762 | INFO     | sum of deviations: 11602300467.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,762 | INFO     | mean x: 1766060628.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,762 | INFO     | mean y: 2465017.172774869
[2025-12-18 09:01:31] 2025-12-18 14:00:58,763 | INFO     | intersect: -9481350471.543303
[2025-12-18 09:01:31] 2025-12-18 14:00:58,763 | INFO     | chi2: 1.583456703518078
[2025-12-18 09:01:31] 2025-12-18 14:00:58,763 | INFO     | sum of square deviations: 1995283922.5
[2025-12-18 09:01:31] 2025-12-18 14:00:58,764 | INFO     | sum of deviations: 11239983128.5
[2025-12-18 09:01:31] 2025-12-18 14:00:58,764 | INFO     | mean x: 1766060475.5
[2025-12-18 09:01:31] 2025-12-18 14:00:58,764 | INFO     | mean y: 2464684.3172043012
[2025-12-18 09:01:31] 2025-12-18 14:00:58,764 | INFO     | intersect: -9946239720.446869
[2025-12-18 09:01:31] 2025-12-18 14:00:58,765 | INFO     | chi2: 1.5843732504024899
[2025-12-18 09:01:31] 2025-12-18 14:00:58,765 | INFO     | current chi2=1.5843732504024899 (change=-0.0578826615451839 %)
[2025-12-18 09:01:31] 2025-12-18 14:00:58,765 | INFO     | right removable region: 185
[2025-12-18 09:01:31] 2025-12-18 14:00:58,765 | INFO     | sum of square deviations: 1995283922.5
[2025-12-18 09:01:31] 2025-12-18 14:00:58,766 | INFO     | sum of deviations: -16945102526.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,766 | INFO     | mean x: 1766060780.5
[2025-12-18 09:01:31] 2025-12-18 14:00:58,766 | INFO     | mean y: 2491042.0322580645
[2025-12-18 09:01:31] 2025-12-18 14:00:58,766 | INFO     | intersect: 15000898364.045893
[2025-12-18 09:01:31] 2025-12-18 14:00:58,767 | INFO     | chi2: 0.11924503221097765
[2025-12-18 09:01:31] 2025-12-18 14:00:58,767 | INFO     | current chi2=0.11924503221097765 (change=92.46932158321458 %)
[2025-12-18 09:01:31] 2025-12-18 14:00:58,767 | INFO     | sum of square deviations: 1838657730.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,768 | INFO     | sum of deviations: -12837787757.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,768 | INFO     | mean x: 1766060933.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,768 | INFO     | mean y: 2487003.767955801
[2025-12-18 09:01:31] 2025-12-18 14:00:58,768 | INFO     | intersect: 12333392888.99946
[2025-12-18 09:01:31] 2025-12-18 14:00:58,768 | INFO     | chi2: 0.10070094087931522
[2025-12-18 09:01:31] 2025-12-18 14:00:58,769 | INFO     | current chi2=0.10070094087931522 (change=15.551248540780108 %)
[2025-12-18 09:01:31] 2025-12-18 14:00:58,769 | INFO     | left removable region: 20
[2025-12-18 09:01:31] 2025-12-18 14:00:58,769 | INFO     | sum of square deviations: 1392881930.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,770 | INFO     | sum of deviations: 681312477.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,770 | INFO     | mean x: 1766061055.0
[2025-12-18 09:01:31] 2025-12-18 14:00:58,770 | INFO     | mean y: 2472362.684848485
[2025-12-18 09:01:31] 2025-12-18 14:00:58,770 | INFO     | intersect: -861376471.8788129
[2025-12-18 09:01:31] 2025-12-18 14:00:58,770 | INFO     | chi2: 0.012906557321178165
[2025-12-18 09:01:31] 2025-12-18 14:00:58,770 | INFO     | current memory leak: 0.49 B/s (using 165 data points, chi2=0.01)
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | could have reported an average CPU frequency of 2547 MHz (10 samples)
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | ..............................
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | . Timing measurements:
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | . get job = 0 s
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | . initial setup = 2 s
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | . payload setup = 4 s
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | . stage-in = 0 s
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | . payload execution = 11619 s
[2025-12-18 09:01:31] 2025-12-18 14:00:58,771 | INFO     | . stage-out = 2 s
[2025-12-18 09:01:31] 2025-12-18 14:00:58,772 | INFO     | . log creation = 0 s
[2025-12-18 09:01:31] 2025-12-18 14:00:58,772 | INFO     | ..............................
[2025-12-18 09:01:31] 2025-12-18 14:00:59,173 | INFO     | 
[2025-12-18 09:01:31] 2025-12-18 14:00:59,173 | INFO     | job summary report
[2025-12-18 09:01:31] 2025-12-18 14:00:59,174 | INFO     | --------------------------------------------------
[2025-12-18 09:01:31] 2025-12-18 14:00:59,174 | INFO     | PanDA job id: 6932712510
[2025-12-18 09:01:31] 2025-12-18 14:00:59,174 | INFO     | task id: 47886933
[2025-12-18 09:01:31] 2025-12-18 14:00:59,174 | INFO     | errors: (none)
[2025-12-18 09:01:31] 2025-12-18 14:00:59,174 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 09:01:31] 2025-12-18 14:00:59,174 | INFO     | pilot state: finished 
[2025-12-18 09:01:31] 2025-12-18 14:00:59,175 | INFO     | transexitcode: 0
[2025-12-18 09:01:31] 2025-12-18 14:00:59,175 | INFO     | exeerrorcode: 0
[2025-12-18 09:01:31] 2025-12-18 14:00:59,175 | INFO     | exeerrordiag: 
[2025-12-18 09:01:31] 2025-12-18 14:00:59,175 | INFO     | exitcode: 0
[2025-12-18 09:01:31] 2025-12-18 14:00:59,175 | INFO     | exitmsg: OK
[2025-12-18 09:01:31] 2025-12-18 14:00:59,175 | INFO     | cpuconsumptiontime: 88165 s
[2025-12-18 09:01:31] 2025-12-18 14:00:59,176 | INFO     | nevents: 400
[2025-12-18 09:01:31] 2025-12-18 14:00:59,176 | INFO     | neventsw: 0
[2025-12-18 09:01:31] 2025-12-18 14:00:59,176 | INFO     | pid: 14087
[2025-12-18 09:01:31] 2025-12-18 14:00:59,176 | INFO     | pgrp: 14087
[2025-12-18 09:01:31] 2025-12-18 14:00:59,176 | INFO     | corecount: 8
[2025-12-18 09:01:31] 2025-12-18 14:00:59,176 | INFO     | event service: False
[2025-12-18 09:01:31] 2025-12-18 14:00:59,177 | INFO     | sizes: {0: 2283969, 4: 2284231, 11: 2284259, 11628: 2313721, 11632: 2322775, 11636: 2322913}
[2025-12-18 09:01:31] 2025-12-18 14:00:59,177 | INFO     | --------------------------------------------------
[2025-12-18 09:01:31] 2025-12-18 14:00:59,177 | INFO     | 
[2025-12-18 09:01:31] 2025-12-18 14:00:59,177 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-18 09:01:31] 2025-12-18 14:00:59,194 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,195 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,195 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,195 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,195 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,195 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 09:01:31] 2025-12-18 14:00:59,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,198 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 09:01:31] 2025-12-18 14:00:59,198 | INFO     | job 6932712510 has completed (purged errors)
[2025-12-18 09:01:31] 2025-12-18 14:00:59,198 | INFO     | overall cleanup function is called
[2025-12-18 09:01:31] 2025-12-18 14:01:00,206 | INFO     | --- collectZombieJob: --- 10, [14087]
[2025-12-18 09:01:31] 2025-12-18 14:01:00,207 | INFO     | zombie collector waiting for pid 14087
[2025-12-18 09:01:31] 2025-12-18 14:01:00,207 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 09:01:31] 2025-12-18 14:01:00,207 | INFO     | collected zombie processes
[2025-12-18 09:01:31] 2025-12-18 14:01:00,207 | INFO     | will attempt to kill all subprocesses of pid=14087
[2025-12-18 09:01:31] 2025-12-18 14:01:00,398 | INFO     | process IDs to be killed: [14087] (in reverse order)
[2025-12-18 09:01:31] 2025-12-18 14:01:00,463 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 09:01:31] 2025-12-18 14:01:00,464 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 09:01:31] 2025-12-18 14:01:00,468 | INFO     | did not find any defunct processes belonging to 14087
[2025-12-18 09:01:31] 2025-12-18 14:01:00,470 | INFO     | did not find any defunct processes belonging to 14087
[2025-12-18 09:01:31] 2025-12-18 14:01:00,470 | INFO     | ready for new job
[2025-12-18 09:01:31] 2025-12-18 14:01:00,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 09:01:31] 2025-12-18 14:01:00,472 | INFO     | ***************************************
[2025-12-18 09:01:31] 2025-12-18 14:01:00,472 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 09:01:31] 2025-12-18 14:01:00,472 | INFO     | ***************************************
[2025-12-18 09:01:31] 2025-12-18 14:01:00,472 | INFO     | 
[2025-12-18 09:01:31] 2025-12-18 14:01:00,473 | INFO     | architecture information:
[2025-12-18 09:01:31] 2025-12-18 14:01:00,473 | INFO     | executing command: cat /etc/os-release
[2025-12-18 09:01:31] 2025-12-18 14:01:00,484 | INFO     | cat /etc/os-release:
[2025-12-18 09:01:31] NAME="CentOS Linux"
[2025-12-18 09:01:31] VERSION="7 (Core)"
[2025-12-18 09:01:31] ID="centos"
[2025-12-18 09:01:31] ID_LIKE="rhel fedora"
[2025-12-18 09:01:31] VERSION_ID="7"
[2025-12-18 09:01:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 09:01:31] ANSI_COLOR="0;31"
[2025-12-18 09:01:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 09:01:31] HOME_URL="https://www.centos.org/"
[2025-12-18 09:01:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 09:01:31] 
[2025-12-18 09:01:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 09:01:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 09:01:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 09:01:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 09:01:31] 
[2025-12-18 09:01:31] 2025-12-18 14:01:00,484 | INFO     | ***************************************
[2025-12-18 09:01:31] 2025-12-18 14:01:00,987 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-18 09:01:31] 2025-12-18 14:01:01,004 | INFO     | sufficient remaining disk space (28370272256 B)
[2025-12-18 09:01:31] 2025-12-18 14:01:01,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 09:01:31] 2025-12-18 14:01:01,004 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 09:01:31] 2025-12-18 14:01:01,004 | INFO     | update_server=False
[2025-12-18 09:01:31] 2025-12-18 14:01:01,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 09:01:31] 2025-12-18 14:01:01,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 09:01:31] 2025-12-18 14:01:01,798 | INFO     | all data control threads have been joined
[2025-12-18 09:01:31] 2025-12-18 14:01:01,865 | INFO     | all job control threads have been joined
[2025-12-18 09:01:31] 2025-12-18 14:01:01,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 09:01:31] 2025-12-18 14:01:01,913 | INFO     | aborting loop
[2025-12-18 09:01:31] 2025-12-18 14:01:02,010 | INFO     | [job] retrieve thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,097 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,326 | INFO     | [job] validate thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,358 | INFO     | all payload control threads have been joined
[2025-12-18 09:01:31] 2025-12-18 14:01:02,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 09:01:31] 2025-12-18 14:01:02,674 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,675 | INFO     | [data] copytool_in thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,805 | INFO     | [data] control thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,869 | INFO     | [job] control thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,917 | INFO     | [job] job monitor thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,930 | INFO     | [payload] validate_post thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,950 | INFO     | [payload] failed_post thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:02,997 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:03,365 | INFO     | [payload] control thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:03,859 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 09:01:31] 2025-12-18 14:01:04,440 | INFO     | [data] copytool_out thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:04,866 | INFO     | [job] queue monitor thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:05,011 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:07,109 | INFO     | [monitor] cgroup control has ended
[2025-12-18 09:01:31] 2025-12-18 14:01:11,619 | INFO     | job.realtimelogging is not enabled
[2025-12-18 09:01:31] 2025-12-18 14:01:12,623 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 09:01:31] 2025-12-18 14:01:12,716 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203587209024)>', '<ExcThread(monitor, started 140203150792448)>']
[2025-12-18 09:01:31] 2025-12-18 14:01:17,744 | INFO     | all workflow threads have been joined
[2025-12-18 09:01:31] 2025-12-18 14:01:17,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 09:01:31] 2025-12-18 14:01:17,752 | INFO     | traces error code: 0
[2025-12-18 09:01:31] 2025-12-18 14:01:17,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 09:01:31] 2025-12-18 14:01:31,594 | INFO     | PID=7649 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-18 09:01:31] 2025-12-18 14:01:31,594 | INFO     | .. there are 3 such processes running
[2025-12-18 09:01:31] 2025-12-18 14:01:31,594 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 09:01:31] 2025-12-18 14:01:31,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 09:01:31] 2025-12-18 14:01:31,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 09:01:31] 2025-12-18 14:01:31,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 09:01:31] 2025-12-18 14:01:31,595 | INFO     | [monitor] control thread has ended
[2025-12-18 09:01:31] 2025-12-18 14:01:31,719 [wrapper] ==== pilot stdout END ====
[2025-12-18 09:01:31] 2025-12-18 14:01:31,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 09:01:31] 2025-12-18 14:01:31,724 [wrapper] pilotpid: 7649
[2025-12-18 09:01:31] 2025-12-18 14:01:31,726 [wrapper] Pilot exit status: 0
[2025-12-18 09:01:31] 2025-12-18 14:01:31,736 [wrapper] pandaids: 6932712510
[2025-12-18 09:01:31] 2025-12-18 14:01:31,776 [wrapper] cleanup supervisor_pilot 12064 7650
[2025-12-18 09:01:31] 2025-12-18 14:01:31,780 [wrapper] Test setup, not cleaning
[2025-12-18 09:01:31] 2025-12-18 14:01:31,782 [wrapper] apfmon messages muted
[2025-12-18 09:01:31] 2025-12-18 14:01:31,784 [wrapper] ==== wrapper stdout END ====
[2025-12-18 09:01:31] 2025-12-18 14:01:31,786 [wrapper] ==== wrapper stderr END ====
[2025-12-18 09:01:31]  *** Error codes and diagnostics ***
[2025-12-18 09:01:31]     "exeErrorCode": 0,
[2025-12-18 09:01:31]     "exeErrorDiag": "",
[2025-12-18 09:01:31]     "pilotErrorCode": 0,
[2025-12-18 09:01:31]     "pilotErrorDiag": "",
[2025-12-18 09:01:31]  *** Listing of results directory ***
[2025-12-18 09:01:31] total 334012
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas      5112 Dec 17 19:45 queuedata.json
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas    579449 Dec 17 19:45 pilot3.tar.gz
[2025-12-18 09:01:31] -rwx------ 1 boincer umatlas     36322 Dec 17 19:45 runpilot2-wrapper.sh
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas       100 Dec 18 05:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 09:01:31] -rwxr-xr-x 1 boincer umatlas      7986 Dec 18 05:46 run_atlas
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas       105 Dec 18 05:46 job.xml
[2025-12-18 09:01:31] -rw-r--r-- 2 boincer umatlas 191757073 Dec 18 05:46 EVNT.47886929._000496.pool.root.1
[2025-12-18 09:01:31] -rw-r--r-- 2 boincer umatlas     15847 Dec 18 05:46 start_atlas.sh
[2025-12-18 09:01:31] drwxrwx--x 2 boincer umatlas      4096 Dec 18 05:46 shared
[2025-12-18 09:01:31] -rw-r--r-- 2 boincer umatlas    592400 Dec 18 05:46 input.tar.gz
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas         0 Dec 18 05:46 boinc_lockfile
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas      2515 Dec 18 05:46 pandaJob.out
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas        57 Dec 18 05:46 setup.sh.local
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas    988141 Dec 18 05:46 agis_schedconf.cvmfs.json
[2025-12-18 09:01:31] drwx------ 5 boincer umatlas      4096 Dec 18 05:46 pilot3
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas      5951 Dec 18 09:00 init_data.xml
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas 142266810 Dec 18 09:00 HITS.47886933._012338.pool.root.1
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas       530 Dec 18 09:00 boinc_task_state.xml
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas      1054 Dec 18 09:00 memory_monitor_summary.json
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas        95 Dec 18 09:00 pilot_heartbeat.json
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas   1516240 Dec 18 09:00 agis_ddmendpoints.agis.ALL.json
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas    417173 Dec 18 09:00 log.47886933._012338.job.log.tgz.1
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas      7850 Dec 18 09:00 heartbeat.json
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas      8192 Dec 18 09:01 boinc_mmap_file
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas        28 Dec 18 09:01 wrapper_checkpoint.txt
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas       819 Dec 18 09:01 pilotlog.txt
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas   1628746 Dec 18 09:01 log.47886933._012338.job.log.1
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas       357 Dec 18 09:01 output.list
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas       620 Dec 18 09:01 runtime_log
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas   2068480 Dec 18 09:01 result.tar.gz
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas      9343 Dec 18 09:01 runtime_log.err
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas       662 Dec 18 09:01 Do0KDmlJHq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHzcKDmm8p2sm.diag
[2025-12-18 09:01:31] -rw-r--r-- 1 boincer umatlas     21340 Dec 18 09:01 stderr.txt
[2025-12-18 09:01:31] HITS file was successfully produced:
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas 142266810 Dec 18 09:00 shared/HITS.pool.root.1
[2025-12-18 09:01:31]  *** Contents of shared directory: ***
[2025-12-18 09:01:31] total 328820
[2025-12-18 09:01:31] -rw-r--r-- 2 boincer umatlas 191757073 Dec 18 05:46 ATLAS.root_0
[2025-12-18 09:01:31] -rw-r--r-- 2 boincer umatlas     15847 Dec 18 05:46 start_atlas.sh
[2025-12-18 09:01:31] -rw-r--r-- 2 boincer umatlas    592400 Dec 18 05:46 input.tar.gz
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas 142266810 Dec 18 09:00 HITS.pool.root.1
[2025-12-18 09:01:31] -rw------- 1 boincer umatlas   2068480 Dec 18 09:01 result.tar.gz
09:01:33 (3956): run_atlas exited; CPU time 88318.536339
09:01:33 (3956): called boinc_finish(0)

</stderr_txt>
]]>

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