Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-18 20:46:26 (8932): vboxwrapper version 26210
2025-12-18 20:46:26 (8932): BOINC client version: 8.2.4
2025-12-18 20:46:27 (8932): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-12-18 20:46:27 (8932): Successfully copied 'init_data.xml' to the shared directory.
2025-12-18 20:46:27 (8932): Create VM. (boinc_baf74f58ac7ab65e, slot#3)
2025-12-18 20:46:28 (8932): Setting Memory Size for VM. (4800MB)
2025-12-18 20:46:28 (8932): Setting CPU Count for VM. (8)
2025-12-18 20:46:28 (8932): Setting Chipset Options for VM.
2025-12-18 20:46:28 (8932): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-18 20:46:29 (8932): Setting Boot Options for VM.
2025-12-18 20:46:29 (8932): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-18 20:46:29 (8932): Enabling VM Network Access.
2025-12-18 20:46:30 (8932): Disabling USB Support for VM.
2025-12-18 20:46:30 (8932): Disabling COM Port Support for VM.
2025-12-18 20:46:30 (8932): Disabling LPT Port Support for VM.
2025-12-18 20:46:30 (8932): Disabling Audio Support for VM.
2025-12-18 20:46:31 (8932): Disabling Clipboard Support for VM.
2025-12-18 20:46:31 (8932): Disabling Drag and Drop Support for VM.
2025-12-18 20:46:31 (8932): Adding storage controller(s) to VM.
2025-12-18 20:46:31 (8932): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-18 20:46:34 (8932): Adding VirtualBox Guest Additions to VM.
2025-12-18 20:46:34 (8932): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-18 20:46:34 (8932): forwarding host port 57128 to guest port 80
2025-12-18 20:46:34 (8932): Enabling remote desktop for VM.
2025-12-18 20:46:35 (8932): Required extension pack not installed, remote desktop not enabled.
2025-12-18 20:46:35 (8932): Enabling shared directory for VM.
2025-12-18 20:46:35 (8932): Starting VM using VBoxManage interface. (boinc_baf74f58ac7ab65e, slot#3)
2025-12-18 20:46:40 (8932): Successfully started VM. (PID = '2464')
2025-12-18 20:46:40 (8932): Reporting VM Process ID to BOINC.
2025-12-18 20:46:40 (8932): Guest Log: BIOS: VirtualBox 7.1.6
2025-12-18 20:46:40 (8932): Guest Log: CPUID EDX: 0x178bfbff
2025-12-18 20:46:40 (8932): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-18 20:46:40 (8932): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-18 20:46:40 (8932): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-18 20:46:40 (8932): Detected: Web Application Enabled (http://localhost:57128)
2025-12-18 20:46:40 (8932): Preference change detected
2025-12-18 20:46:40 (8932): Setting CPU throttle for VM. (75%)
2025-12-18 20:46:41 (8932): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-18 20:46:42 (8932): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-18 20:46:42 (8932): Guest Log: BIOS: Booting from Hard Disk...
2025-12-18 20:46:45 (8932): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-18 20:46:45 (8932): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-18 20:46:45 (8932): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-18 20:46:53 (8932): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-18 20:46:53 (8932): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-18 20:47:00 (8932): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-18 20:47:00 (8932): Guest Log: 00:00:00.000161 main     Log opened 2025-12-18T20:46:58.240618000Z
2025-12-18 20:47:00 (8932): Guest Log: 00:00:00.000262 main     OS Product: Linux
2025-12-18 20:47:00 (8932): Guest Log: 00:00:00.000313 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-18 20:47:00 (8932): Guest Log: 00:00:00.000334 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-18 20:47:00 (8932): Guest Log: 00:00:00.000356 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-18 20:47:00 (8932): Guest Log: 00:00:00.000357 main     Process ID: 1382
2025-12-18 20:47:00 (8932): Guest Log: 00:00:00.000358 main     Package type: LINUX_64BITS_GENERIC
2025-12-18 20:47:00 (8932): Guest Log: 00:00:00.001706 main     5.2.32 r132073 started. Verbose level = 0
2025-12-18 20:47:00 (8932): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-18 20:47:00 (8932): Guest Log: [INFO] Mounting shared directory
2025-12-18 20:47:00 (8932): Guest Log: [INFO] Checking for init_data.xml
2025-12-18 20:47:03 (8932): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-18 20:47:03 (8932): Guest Log: [INFO] Detected branch: prod
2025-12-18 20:47:03 (8932): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-18 20:47:03 (8932): Guest Log: Copying input files
2025-12-18 20:47:05 (8932): Guest Log: Copied input files into RunAtlas.
2025-12-18 20:47:05 (8932): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-18 20:47:05 (8932): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-18 20:47:05 (8932): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-18 20:47:05 (8932): Guest Log: Further information can be found at the LHC@home message board.
2025-12-18 20:47:10 (8932): Guest Log: 00:00:10.022613 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 086 813 000ns (GuestNow=1 766 087 230 174 598 000 ns GuestLast=1 766 090 818 261 411 000 ns fSetTimeLastLoop=true )
2025-12-18 20:47:14 (8932): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-18 20:47:15 (8932): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-18 20:47:15 (8932): Guest Log: 2.6.3.0 1656 0 32188 154163 3 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-12-18 20:47:15 (8932): Guest Log: copied the webapp to /var/www
2025-12-18 20:47:15 (8932): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-18 20:47:15 (8932): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-18 20:47:15 (8932): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-18 20:47:16 (8932): Guest Log:  *** Starting ATLAS job. (PandaID=6933076723 taskID=47898782) ***
2025-12-18 22:26:47 (8932): Status Report: Elapsed Time: '6000.000000'
2025-12-18 22:26:47 (8932): Status Report: CPU Time: '31450.671875'
2025-12-19 00:06:53 (8932): Status Report: Elapsed Time: '12000.000000'
2025-12-19 00:06:53 (8932): Status Report: CPU Time: '66700.859375'
2025-12-19 00:41:19 (8932): Guest Log:  *** Job finished ***
2025-12-19 00:41:19 (8932): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:12,136 | INFO     | found 0 job(s) in 20 queues
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:12,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:12,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:13,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140451066275648)>', '<ExcThread(monitor, started 140450245629696)>']
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:13,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:13,168 | INFO     | [monitor] control thread has ended
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,023 | INFO     | all workflow threads have been joined
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,023 | INFO     | end of generic workflow (traces error code: 0)
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,023 | INFO     | traces error code: 0
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,116 [wrapper] ==== pilot stdout END ====
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,121 [wrapper] ==== wrapper stdout RESUME ====
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,125 [wrapper] pilotpid: 6091
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,130 [wrapper] Pilot exit status: 0
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,173 [wrapper] pandaids: 6933076723
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,206 [wrapper] cleanup supervisor_pilot 13456 6092
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,212 [wrapper] Test setup, not cleaning
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,217 [wrapper] apfmon messages muted
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,222 [wrapper] ==== wrapper stdout END ====
2025-12-19 00:41:19 (8932): Guest Log: 2025-12-18 23:41:18,226 [wrapper] ==== wrapper stderr END ====
2025-12-19 00:41:19 (8932): Guest Log:  *** Error codes and diagnostics ***
2025-12-19 00:41:19 (8932): Guest Log:     "exeErrorCode": 0,
2025-12-19 00:41:19 (8932): Guest Log:     "exeErrorDiag": "",
2025-12-19 00:41:19 (8932): Guest Log:     "pilotErrorCode": 0,
2025-12-19 00:41:19 (8932): Guest Log:     "pilotErrorDiag": "",
2025-12-19 00:41:19 (8932): Guest Log:  *** Listing of results directory ***
2025-12-19 00:41:19 (8932): Guest Log: total 203252
2025-12-19 00:41:19 (8932): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Dec 18 05:16 queuedata.json
2025-12-19 00:41:19 (8932): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Dec 18 05:16 pilot3.tar.gz
2025-12-19 00:41:19 (8932): Guest Log: -rwx------. 1 atlas atlas     36322 Dec 18 05:17 runpilot2-wrapper.sh
2025-12-19 00:41:19 (8932): Guest Log: -rwxr-xr-x. 1 atlas atlas      8641 Dec 18 19:47 init_data.xml
2025-12-19 00:41:19 (8932): Guest Log: -rwxr-xr-x. 1 atlas atlas    592401 Dec 18 19:47 input.tar.gz
2025-12-19 00:41:19 (8932): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec 18 19:47 start_atlas.sh
2025-12-19 00:41:19 (8932): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec 18 19:47 EVNT.47898779._000157.pool.root.1 -> /data/./ATLAS.root_0
2025-12-19 00:41:19 (8932): Guest Log: -rw-r--r--. 1 atlas atlas      2522 Dec 18 19:47 pandaJob.out
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas    988880 Dec 18 19:47 agis_schedconf.cvmfs.json
2025-12-19 00:41:19 (8932): Guest Log: drwx------. 5 atlas atlas      4096 Dec 18 19:47 pilot3
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas 199941832 Dec 18 23:39 HITS.47898782._006317.pool.root.1
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas        95 Dec 18 23:40 pilot_heartbeat.json
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas      1032 Dec 18 23:40 memory_monitor_summary.json
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec 18 23:40 agis_ddmendpoints.agis.ALL.json
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas    442303 Dec 18 23:40 log.47898782._006317.job.log.tgz.1
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas      7799 Dec 18 23:40 heartbeat.json
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas      4991 Dec 18 23:41 pilotlog.txt
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas   1734468 Dec 18 23:41 log.47898782._006317.job.log.1
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas       357 Dec 18 23:41 output.list
2025-12-19 00:41:19 (8932): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec 18 23:41 runtime_log
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas   2191360 Dec 18 23:41 result.tar.gz
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas       664 Dec 18 23:41 TDhKDmzYLq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7TdKDmydvmTo.diag
2025-12-19 00:41:19 (8932): Guest Log: -rw-r--r--. 1 atlas atlas      8752 Dec 18 23:41 runtime_log.err
2025-12-19 00:41:19 (8932): Guest Log: Looking for outputfile HITS.47898782._006317.pool.root.1
2025-12-19 00:41:19 (8932): Guest Log: HITS file was successfully produced
2025-12-19 00:41:19 (8932): Guest Log: -rw-------. 1 atlas atlas 199941832 Dec 18 23:39 /home/atlas/RunAtlas/HITS.47898782._006317.pool.root.1
2025-12-19 00:41:20 (8932): Guest Log: Successfully finished the ATLAS job!
2025-12-19 00:41:20 (8932): Guest Log: Copying the results back to the shared directory!
2025-12-19 00:41:20 (8932): Guest Log:  *** Contents of shared directory: ***
2025-12-19 00:41:20 (8932): Guest Log: total 406780
2025-12-19 00:41:20 (8932): Guest Log: -rwxrwxrwx. 1 root root 213782862 Dec 18 19:46 ATLAS.root_0
2025-12-19 00:41:20 (8932): Guest Log: -rwxrwxrwx. 1 root root 199941832 Dec 18 23:41 HITS.pool.root.1
2025-12-19 00:41:20 (8932): Guest Log: -rwxrwxrwx. 1 root root      8641 Dec 18 19:46 init_data.xml
2025-12-19 00:41:20 (8932): Guest Log: -rwxrwxrwx. 1 root root    592401 Dec 18 10:33 input.tar.gz
2025-12-19 00:41:20 (8932): Guest Log: -rwxrwxrwx. 1 root root   2191360 Dec 18  2025 result.tar.gz
2025-12-19 00:41:20 (8932): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec 18 10:33 start_atlas.sh
2025-12-19 00:41:20 (8932): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-19 00:41:21 (8932): VM Completion File Detected.
2025-12-19 00:41:21 (8932): Powering off VM.
2025-12-19 00:41:21 (8932): Successfully stopped VM.
2025-12-19 00:41:21 (8932): Deregistering VM. (boinc_baf74f58ac7ab65e, slot#3)
2025-12-19 00:41:21 (8932): Removing network bandwidth throttle group from VM.
2025-12-19 00:41:22 (8932): Removing VM from VirtualBox.
2025-12-19 00:41:27 (8932): called boinc_finish(0)

</stderr_txt>
]]>

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