Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:46:57 (2027561): wrapper (7.7.26015): starting
21:46:57 (2027561): wrapper: running run_atlas (--nthreads 3)
[2025-12-18 21:46:58] Arguments: --nthreads 3
[2025-12-18 21:46:58] Threads: 3
[2025-12-18 21:46:58] Checking for CVMFS
[2025-12-18 21:46:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 21:46:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 21:46:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 21:46:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 21:46:58] 2.9.2.0 19183 8139 72448 154164 2 57 32489568 36864000 0 130560 0 5293693 99.989 299757 8954 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 21:46:58] CVMFS is ok
[2025-12-18 21:46:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 21:46:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 21:46:58] Further information can be found at the LHC@home message board.
[2025-12-18 21:46:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 21:46:58] Checking for apptainer binary...
[2025-12-18 21:46:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 21:46:58] Running /usr/bin/apptainer --version
[2025-12-18 21:46:58] apptainer version 1.4.1-1.1
[2025-12-18 21:46:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 21:46:58] magicA244b
[2025-12-18 21:46:58] apptainer works
[2025-12-18 21:46:58] Set ATHENA_PROC_NUMBER=3
[2025-12-18 21:46:58] Set ATHENA_CORE_NUMBER=3
[2025-12-18 21:46:58] Starting ATLAS job with PandaID=6932674178
[2025-12-18 21:46:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 23:17:27]  *** The last 200 lines of the pilot log: ***
[2025-12-18 23:17:27] 2025-12-18 22:16:55,075 | INFO     | job 6932674178 has completed (purged errors)
[2025-12-18 23:17:27] 2025-12-18 22:16:55,075 | INFO     | overall cleanup function is called
[2025-12-18 23:17:27] 2025-12-18 22:16:56,081 | INFO     | --- collectZombieJob: --- 10, [2037750]
[2025-12-18 23:17:27] 2025-12-18 22:16:56,082 | INFO     | zombie collector waiting for pid 2037750
[2025-12-18 23:17:27] 2025-12-18 22:16:56,082 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 23:17:27] 2025-12-18 22:16:56,082 | INFO     | collected zombie processes
[2025-12-18 23:17:27] 2025-12-18 22:16:56,082 | INFO     | will attempt to kill all subprocesses of pid=2037750
[2025-12-18 23:17:27] 2025-12-18 22:16:56,120 | INFO     | process IDs to be killed: [2037750] (in reverse order)
[2025-12-18 23:17:27] 2025-12-18 22:16:56,144 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 23:17:27] 2025-12-18 22:16:56,144 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 23:17:27] 2025-12-18 22:16:56,145 | INFO     | did not find any defunct processes belonging to 2037750
[2025-12-18 23:17:27] 2025-12-18 22:16:56,146 | INFO     | did not find any defunct processes belonging to 2037750
[2025-12-18 23:17:27] 2025-12-18 22:16:56,146 | INFO     | ready for new job
[2025-12-18 23:17:27] 2025-12-18 22:16:56,146 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 23:17:27] 2025-12-18 22:16:56,146 | INFO     | ***************************************
[2025-12-18 23:17:27] 2025-12-18 22:16:56,147 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 23:17:27] 2025-12-18 22:16:56,147 | INFO     | ***************************************
[2025-12-18 23:17:27] 2025-12-18 22:16:56,147 | INFO     | 
[2025-12-18 23:17:27] 2025-12-18 22:16:56,147 | INFO     | architecture information:
[2025-12-18 23:17:27] 2025-12-18 22:16:56,147 | INFO     | executing command: cat /etc/os-release
[2025-12-18 23:17:27] 2025-12-18 22:16:56,156 | INFO     | cat /etc/os-release:
[2025-12-18 23:17:27] NAME="CentOS Linux"
[2025-12-18 23:17:27] VERSION="7 (Core)"
[2025-12-18 23:17:27] ID="centos"
[2025-12-18 23:17:27] ID_LIKE="rhel fedora"
[2025-12-18 23:17:27] VERSION_ID="7"
[2025-12-18 23:17:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 23:17:27] ANSI_COLOR="0;31"
[2025-12-18 23:17:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 23:17:27] HOME_URL="https://www.centos.org/"
[2025-12-18 23:17:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 23:17:27] 
[2025-12-18 23:17:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 23:17:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 23:17:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 23:17:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 23:17:27] 
[2025-12-18 23:17:27] 2025-12-18 22:16:56,156 | INFO     | ***************************************
[2025-12-18 23:17:27] 2025-12-18 22:16:56,659 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 23:17:27] 2025-12-18 22:16:56,682 | INFO     | sufficient remaining disk space (327918026752 B)
[2025-12-18 23:17:27] 2025-12-18 22:16:56,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 23:17:27] 2025-12-18 22:16:56,683 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 23:17:27] 2025-12-18 22:16:56,683 | INFO     | update_server=False
[2025-12-18 23:17:27] 2025-12-18 22:16:56,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 23:17:27] 2025-12-18 22:16:56,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 23:17:27] 2025-12-18 22:16:56,684 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 23:17:27] 2025-12-18 22:16:56,685 | INFO     | aborting loop
[2025-12-18 23:17:27] 2025-12-18 22:16:57,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 23:17:27] 2025-12-18 22:16:57,553 | INFO     | all job control threads have been joined
[2025-12-18 23:17:27] 2025-12-18 22:16:57,689 | INFO     | [job] retrieve thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:57,690 | INFO     | [job] queue monitor thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:57,691 | INFO     | [job] job monitor thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:57,698 | INFO     | all data control threads have been joined
[2025-12-18 23:17:27] 2025-12-18 22:16:57,797 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:57,801 | INFO     | [job] validate thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:57,887 | INFO     | [data] copytool_in thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:58,040 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:58,152 | INFO     | all payload control threads have been joined
[2025-12-18 23:17:27] 2025-12-18 22:16:58,470 | INFO     | [payload] failed_post thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:58,559 | INFO     | [job] control thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:58,704 | INFO     | [data] control thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:58,951 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:58,973 | INFO     | [payload] validate_post thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:59,158 | INFO     | [payload] control thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:59,282 | INFO     | [data] copytool_out thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:16:59,300 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 23:17:27] 2025-12-18 22:17:03,307 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:17:07,075 | INFO     | job.realtimelogging is not enabled
[2025-12-18 23:17:27] 2025-12-18 22:17:08,081 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 23:17:27] 2025-12-18 22:17:08,461 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-12-18 23:17:27] 2025-12-18 22:17:17,039 | INFO     | [monitor] cgroup control has ended
[2025-12-18 23:17:27] 2025-12-18 22:17:18,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139890490705728)>', '<ExcThread(monitor, started 139889995654912)>']
[2025-12-18 23:17:27] 2025-12-18 22:17:23,092 | INFO     | all workflow threads have been joined
[2025-12-18 23:17:27] 2025-12-18 22:17:23,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 23:17:27] 2025-12-18 22:17:23,093 | INFO     | traces error code: 0
[2025-12-18 23:17:27] 2025-12-18 22:17:23,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 23:17:27] 2025-12-18 22:17:27,223 | INFO     | PID=2031289 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 23:17:27] 2025-12-18 22:17:27,223 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 23:17:27] 2025-12-18 22:17:27,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 23:17:27] 2025-12-18 22:17:27,223 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 23:17:27] 2025-12-18 22:17:27,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 23:17:27] 2025-12-18 22:17:27,223 | INFO     | [monitor] control thread has ended
[2025-12-18 23:17:27] 2025-12-18 22:17:27,264 [wrapper] ==== pilot stdout END ====
[2025-12-18 23:17:27] 2025-12-18 22:17:27,267 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 23:17:27] 2025-12-18 22:17:27,270 [wrapper] pilotpid: 2031289
[2025-12-18 23:17:27] 2025-12-18 22:17:27,273 [wrapper] Pilot exit status: 0
[2025-12-18 23:17:27] 2025-12-18 22:17:27,281 [wrapper] pandaids: 6932674178
[2025-12-18 23:17:27] 2025-12-18 22:17:27,297 [wrapper] cleanup supervisor_pilot 2052042 2031290
[2025-12-18 23:17:27] 2025-12-18 22:17:27,300 [wrapper] Test setup, not cleaning
[2025-12-18 23:17:27] 2025-12-18 22:17:27,302 [wrapper] apfmon messages muted
[2025-12-18 23:17:27] 2025-12-18 22:17:27,305 [wrapper] ==== wrapper stdout END ====
[2025-12-18 23:17:27] 2025-12-18 22:17:27,308 [wrapper] ==== wrapper stderr END ====
[2025-12-18 23:17:27]  *** Error codes and diagnostics ***
[2025-12-18 23:17:27]     "exeErrorCode": 0,
[2025-12-18 23:17:27]     "exeErrorDiag": "",
[2025-12-18 23:17:27]     "pilotErrorCode": 0,
[2025-12-18 23:17:27]     "pilotErrorDiag": "",
[2025-12-18 23:17:27]  *** Listing of results directory ***
[2025-12-18 23:17:27] total 334032
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc    579449 Dec 17 23:04 pilot3.tar.gz
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc      5112 Dec 17 23:05 queuedata.json
[2025-12-18 23:17:27] -rwx------ 1 boinc boinc     36322 Dec 17 23:05 runpilot2-wrapper.sh
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc       100 Dec 18 21:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 23:17:27] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 21:46 run_atlas
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc       105 Dec 18 21:46 job.xml
[2025-12-18 23:17:27] -rw-r--r-- 2 boinc boinc 191445404 Dec 18 21:46 EVNT.47886929._000407.pool.root.1
[2025-12-18 23:17:27] -rw-r--r-- 2 boinc boinc    592404 Dec 18 21:46 input.tar.gz
[2025-12-18 23:17:27] -rw-r--r-- 2 boinc boinc     15847 Dec 18 21:46 start_atlas.sh
[2025-12-18 23:17:27] drwxrwx--x 2 boinc boinc      4096 Dec 18 21:46 shared
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc         0 Dec 18 21:46 boinc_setup_complete
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc      6199 Dec 18 21:46 init_data.xml
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc         0 Dec 18 21:46 boinc_lockfile
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc      2515 Dec 18 21:46 pandaJob.out
[2025-12-18 23:17:27] -rw------- 1 boinc boinc    988880 Dec 18 21:47 agis_schedconf.cvmfs.json
[2025-12-18 23:17:27] -rw------- 1 boinc boinc   1516240 Dec 18 21:47 agis_ddmendpoints.agis.ALL.json
[2025-12-18 23:17:27] drwx------ 5 boinc boinc      4096 Dec 18 21:47 pilot3
[2025-12-18 23:17:27] -rw------- 1 boinc boinc 144636393 Dec 18 23:16 HITS.47886933._011612.pool.root.1
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc       529 Dec 18 23:16 boinc_task_state.xml
[2025-12-18 23:17:27] -rw------- 1 boinc boinc        95 Dec 18 23:16 pilot_heartbeat.json
[2025-12-18 23:17:27] -rw------- 1 boinc boinc      1012 Dec 18 23:16 memory_monitor_summary.json
[2025-12-18 23:17:27] -rw------- 1 boinc boinc    247560 Dec 18 23:16 log.47886933._011612.job.log.tgz.1
[2025-12-18 23:17:27] -rw------- 1 boinc boinc      7760 Dec 18 23:16 heartbeat.json
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc      8192 Dec 18 23:16 boinc_mmap_file
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc        27 Dec 18 23:16 wrapper_checkpoint.txt
[2025-12-18 23:17:27] -rw------- 1 boinc boinc       747 Dec 18 23:17 pilotlog.txt
[2025-12-18 23:17:27] -rw------- 1 boinc boinc    786169 Dec 18 23:17 log.47886933._011612.job.log.1
[2025-12-18 23:17:27] -rw------- 1 boinc boinc       357 Dec 18 23:17 output.list
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc       620 Dec 18 23:17 runtime_log
[2025-12-18 23:17:27] -rw------- 1 boinc boinc   1054720 Dec 18 23:17 result.tar.gz
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc      8917 Dec 18 23:17 runtime_log.err
[2025-12-18 23:17:27] -rw------- 1 boinc boinc       662 Dec 18 23:17 kejMDmUpEq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJAYKDmwCetem.diag
[2025-12-18 23:17:27] -rw-r--r-- 1 boinc boinc     11008 Dec 18 23:17 stderr.txt
[2025-12-18 23:17:27] HITS file was successfully produced:
[2025-12-18 23:17:27] -rw------- 1 boinc boinc 144636393 Dec 18 23:16 shared/HITS.pool.root.1
[2025-12-18 23:17:27]  *** Contents of shared directory: ***
[2025-12-18 23:17:27] total 329844
[2025-12-18 23:17:27] -rw-r--r-- 2 boinc boinc 191445404 Dec 18 21:46 ATLAS.root_0
[2025-12-18 23:17:27] -rw-r--r-- 2 boinc boinc    592404 Dec 18 21:46 input.tar.gz
[2025-12-18 23:17:27] -rw-r--r-- 2 boinc boinc     15847 Dec 18 21:46 start_atlas.sh
[2025-12-18 23:17:27] -rw------- 1 boinc boinc 144636393 Dec 18 23:16 HITS.pool.root.1
[2025-12-18 23:17:27] -rw------- 1 boinc boinc   1054720 Dec 18 23:17 result.tar.gz
23:17:49 (2027561): run_atlas exited; CPU time 15407.440368
23:17:49 (2027561): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN