Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:16:42 (1855117): wrapper (7.7.26015): starting
15:16:42 (1855117): wrapper: running run_atlas (--nthreads 2)
[2025-12-18 15:16:42] Arguments: --nthreads 2
[2025-12-18 15:16:42] Threads: 2
[2025-12-18 15:16:42] Checking for CVMFS
[2025-12-18 15:16:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 15:16:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 15:16:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 15:16:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 15:16:42] 2.9.2.0 357904 7745 64116 154153 2 56 28227075 36864001 0 130560 0 3942573 99.987 278845 15546 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 15:16:42] CVMFS is ok
[2025-12-18 15:16:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 15:16:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 15:16:42] Further information can be found at the LHC@home message board.
[2025-12-18 15:16:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 15:16:42] Checking for apptainer binary...
[2025-12-18 15:16:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 15:16:42] Running /usr/bin/apptainer --version
[2025-12-18 15:16:42] apptainer version 1.4.1-1.1
[2025-12-18 15:16:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 15:16:43] atlasA229
[2025-12-18 15:16:43] apptainer works
[2025-12-18 15:16:43] Set ATHENA_PROC_NUMBER=2
[2025-12-18 15:16:43] Set ATHENA_CORE_NUMBER=2
[2025-12-18 15:16:43] Starting ATLAS job with PandaID=6933048941
[2025-12-18 15:16:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 17:23:22]  *** The last 200 lines of the pilot log: ***
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 17:23:22] 2025-12-18 16:22:51,153 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,154 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 17:23:22] 2025-12-18 16:22:51,154 | INFO     | job 6933048941 has completed (purged errors)
[2025-12-18 17:23:22] 2025-12-18 16:22:51,154 | INFO     | overall cleanup function is called
[2025-12-18 17:23:22] 2025-12-18 16:22:52,160 | INFO     | --- collectZombieJob: --- 10, [1865244]
[2025-12-18 17:23:22] 2025-12-18 16:22:52,160 | INFO     | zombie collector waiting for pid 1865244
[2025-12-18 17:23:22] 2025-12-18 16:22:52,160 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 17:23:22] 2025-12-18 16:22:52,161 | INFO     | collected zombie processes
[2025-12-18 17:23:22] 2025-12-18 16:22:52,161 | INFO     | will attempt to kill all subprocesses of pid=1865244
[2025-12-18 17:23:22] 2025-12-18 16:22:52,195 | INFO     | process IDs to be killed: [1865244] (in reverse order)
[2025-12-18 17:23:22] 2025-12-18 16:22:52,217 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 17:23:22] 2025-12-18 16:22:52,217 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 17:23:22] 2025-12-18 16:22:52,218 | INFO     | did not find any defunct processes belonging to 1865244
[2025-12-18 17:23:22] 2025-12-18 16:22:52,219 | INFO     | did not find any defunct processes belonging to 1865244
[2025-12-18 17:23:22] 2025-12-18 16:22:52,219 | INFO     | ready for new job
[2025-12-18 17:23:22] 2025-12-18 16:22:52,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 17:23:22] 2025-12-18 16:22:52,219 | INFO     | ***************************************
[2025-12-18 17:23:22] 2025-12-18 16:22:52,219 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 17:23:22] 2025-12-18 16:22:52,219 | INFO     | ***************************************
[2025-12-18 17:23:22] 2025-12-18 16:22:52,219 | INFO     | 
[2025-12-18 17:23:22] 2025-12-18 16:22:52,220 | INFO     | architecture information:
[2025-12-18 17:23:22] 2025-12-18 16:22:52,220 | INFO     | executing command: cat /etc/os-release
[2025-12-18 17:23:22] 2025-12-18 16:22:52,228 | INFO     | cat /etc/os-release:
[2025-12-18 17:23:22] NAME="CentOS Linux"
[2025-12-18 17:23:22] VERSION="7 (Core)"
[2025-12-18 17:23:22] ID="centos"
[2025-12-18 17:23:22] ID_LIKE="rhel fedora"
[2025-12-18 17:23:22] VERSION_ID="7"
[2025-12-18 17:23:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 17:23:22] ANSI_COLOR="0;31"
[2025-12-18 17:23:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 17:23:22] HOME_URL="https://www.centos.org/"
[2025-12-18 17:23:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 17:23:22] 
[2025-12-18 17:23:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 17:23:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 17:23:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 17:23:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 17:23:22] 
[2025-12-18 17:23:22] 2025-12-18 16:22:52,228 | INFO     | ***************************************
[2025-12-18 17:23:22] 2025-12-18 16:22:52,732 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 17:23:22] 2025-12-18 16:22:52,744 | INFO     | sufficient remaining disk space (332446826496 B)
[2025-12-18 17:23:22] 2025-12-18 16:22:52,744 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 17:23:22] 2025-12-18 16:22:52,744 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 17:23:22] 2025-12-18 16:22:52,744 | INFO     | update_server=False
[2025-12-18 17:23:22] 2025-12-18 16:22:52,744 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 17:23:22] 2025-12-18 16:22:52,744 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 17:23:22] 2025-12-18 16:22:52,745 | INFO     | aborting loop
[2025-12-18 17:23:22] 2025-12-18 16:22:52,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 17:23:22] 2025-12-18 16:22:53,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 17:23:22] 2025-12-18 16:22:53,446 | INFO     | all payload control threads have been joined
[2025-12-18 17:23:22] 2025-12-18 16:22:53,562 | INFO     | all data control threads have been joined
[2025-12-18 17:23:22] 2025-12-18 16:22:53,749 | INFO     | [job] job monitor thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:53,750 | INFO     | [job] queue monitor thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:53,750 | INFO     | [job] retrieve thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:53,784 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:54,143 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:54,149 | INFO     | [data] copytool_in thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:54,194 | INFO     | all job control threads have been joined
[2025-12-18 17:23:22] 2025-12-18 16:22:54,452 | INFO     | [payload] control thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:54,568 | INFO     | [data] control thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:54,701 | INFO     | [job] validate thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:54,814 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:54,831 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:54,981 | INFO     | [payload] validate_post thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:55,069 | INFO     | [payload] failed_post thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:55,200 | INFO     | [job] control thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:55,281 | INFO     | [data] copytool_out thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:22:55,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 17:23:22] 2025-12-18 16:22:59,457 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 17:23:22] 2025-12-18 16:23:06,526 | INFO     | [monitor] cgroup control has ended
[2025-12-18 17:23:22] 2025-12-18 16:23:08,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140468074280768)>', '<ExcThread(monitor, started 140466771195648)>']
[2025-12-18 17:23:22] 2025-12-18 16:23:13,468 | INFO     | all workflow threads have been joined
[2025-12-18 17:23:22] 2025-12-18 16:23:13,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 17:23:22] 2025-12-18 16:23:13,469 | INFO     | traces error code: 0
[2025-12-18 17:23:22] 2025-12-18 16:23:13,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 17:23:22] 2025-12-18 16:23:22,327 | INFO     | PID=1858823 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 17:23:22] 2025-12-18 16:23:22,328 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 17:23:22] 2025-12-18 16:23:22,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 17:23:22] 2025-12-18 16:23:22,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 17:23:22] 2025-12-18 16:23:22,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 17:23:22] 2025-12-18 16:23:22,328 | INFO     | [monitor] control thread has ended
[2025-12-18 17:23:22] 2025-12-18 16:23:22,367 [wrapper] ==== pilot stdout END ====
[2025-12-18 17:23:22] 2025-12-18 16:23:22,370 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 17:23:22] 2025-12-18 16:23:22,373 [wrapper] pilotpid: 1858823
[2025-12-18 17:23:22] 2025-12-18 16:23:22,376 [wrapper] Pilot exit status: 0
[2025-12-18 17:23:22] 2025-12-18 16:23:22,382 [wrapper] pandaids: 6933048941
[2025-12-18 17:23:22] 2025-12-18 16:23:22,395 [wrapper] cleanup supervisor_pilot 1879194 1858824
[2025-12-18 17:23:22] 2025-12-18 16:23:22,398 [wrapper] Test setup, not cleaning
[2025-12-18 17:23:22] 2025-12-18 16:23:22,400 [wrapper] apfmon messages muted
[2025-12-18 17:23:22] 2025-12-18 16:23:22,402 [wrapper] ==== wrapper stdout END ====
[2025-12-18 17:23:22] 2025-12-18 16:23:22,404 [wrapper] ==== wrapper stderr END ====
[2025-12-18 17:23:22]  *** Error codes and diagnostics ***
[2025-12-18 17:23:22]     "exeErrorCode": 0,
[2025-12-18 17:23:22]     "exeErrorDiag": "",
[2025-12-18 17:23:22]     "pilotErrorCode": 0,
[2025-12-18 17:23:22]     "pilotErrorDiag": "",
[2025-12-18 17:23:22]  *** Listing of results directory ***
[2025-12-18 17:23:22] total 435052
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc    579449 Dec 18 04:11 pilot3.tar.gz
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc      5112 Dec 18 04:11 queuedata.json
[2025-12-18 17:23:22] -rwx------ 1 boinc boinc     36322 Dec 18 04:12 runpilot2-wrapper.sh
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc       100 Dec 18 15:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 17:23:22] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 15:16 run_atlas
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc       105 Dec 18 15:16 job.xml
[2025-12-18 17:23:22] -rw-r--r-- 2 boinc boinc 251222075 Dec 18 15:16 EVNT.47929406._000006.pool.root.1
[2025-12-18 17:23:22] -rw-r--r-- 2 boinc boinc    592414 Dec 18 15:16 input.tar.gz
[2025-12-18 17:23:22] -rw-r--r-- 2 boinc boinc     15847 Dec 18 15:16 start_atlas.sh
[2025-12-18 17:23:22] drwxrwx--x 2 boinc boinc      4096 Dec 18 15:16 shared
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc         0 Dec 18 15:16 boinc_setup_complete
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc      6207 Dec 18 15:16 init_data.xml
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc         0 Dec 18 15:16 boinc_lockfile
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc      2573 Dec 18 15:16 pandaJob.out
[2025-12-18 17:23:22] -rw------- 1 boinc boinc    988133 Dec 18 15:16 agis_schedconf.cvmfs.json
[2025-12-18 17:23:22] -rw------- 1 boinc boinc   1516240 Dec 18 15:16 agis_ddmendpoints.agis.ALL.json
[2025-12-18 17:23:22] drwx------ 5 boinc boinc      4096 Dec 18 15:16 pilot3
[2025-12-18 17:23:22] -rw------- 1 boinc boinc 187627352 Dec 18 17:22 HITS.47929408._000168.pool.root.1
[2025-12-18 17:23:22] -rw------- 1 boinc boinc        95 Dec 18 17:22 pilot_heartbeat.json
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc       529 Dec 18 17:22 boinc_task_state.xml
[2025-12-18 17:23:22] -rw------- 1 boinc boinc      1026 Dec 18 17:22 memory_monitor_summary.json
[2025-12-18 17:23:22] -rw------- 1 boinc boinc    282779 Dec 18 17:22 log.47929408._000168.job.log.tgz.1
[2025-12-18 17:23:22] -rw------- 1 boinc boinc      7747 Dec 18 17:22 heartbeat.json
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc      8192 Dec 18 17:23 boinc_mmap_file
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc        27 Dec 18 17:23 wrapper_checkpoint.txt
[2025-12-18 17:23:22] -rw------- 1 boinc boinc       747 Dec 18 17:23 pilotlog.txt
[2025-12-18 17:23:22] -rw------- 1 boinc boinc   1088574 Dec 18 17:23 log.47929408._000168.job.log.1
[2025-12-18 17:23:22] -rw------- 1 boinc boinc       357 Dec 18 17:23 output.list
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc       620 Dec 18 17:23 runtime_log
[2025-12-18 17:23:22] -rw------- 1 boinc boinc   1392640 Dec 18 17:23 result.tar.gz
[2025-12-18 17:23:22] -rw------- 1 boinc boinc       662 Dec 18 17:23 tzHKDmvcJq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgaYKDm24qWfn.diag
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc      8912 Dec 18 17:23 runtime_log.err
[2025-12-18 17:23:22] -rw-r--r-- 1 boinc boinc     11937 Dec 18 17:23 stderr.txt
[2025-12-18 17:23:22] HITS file was successfully produced:
[2025-12-18 17:23:22] -rw------- 1 boinc boinc 187627352 Dec 18 17:22 shared/HITS.pool.root.1
[2025-12-18 17:23:22]  *** Contents of shared directory: ***
[2025-12-18 17:23:22] total 430532
[2025-12-18 17:23:22] -rw-r--r-- 2 boinc boinc 251222075 Dec 18 15:16 ATLAS.root_0
[2025-12-18 17:23:22] -rw-r--r-- 2 boinc boinc    592414 Dec 18 15:16 input.tar.gz
[2025-12-18 17:23:22] -rw-r--r-- 2 boinc boinc     15847 Dec 18 15:16 start_atlas.sh
[2025-12-18 17:23:22] -rw------- 1 boinc boinc 187627352 Dec 18 17:22 HITS.pool.root.1
[2025-12-18 17:23:22] -rw------- 1 boinc boinc   1392640 Dec 18 17:23 result.tar.gz
17:23:24 (1855117): run_atlas exited; CPU time 14695.812233
17:23:24 (1855117): called boinc_finish(0)

</stderr_txt>
]]>

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