Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-18 10:25:21 (19784): vboxwrapper version 26210
2025-12-18 10:25:21 (19784): BOINC client version: 8.2.4
2025-12-18 10:25:21 (19784): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-12-18 10:25:22 (19784): Successfully copied 'init_data.xml' to the shared directory.
2025-12-18 10:25:22 (19784): Create VM. (boinc_05d1a3141ffce854, slot#1)
2025-12-18 10:25:22 (19784): Setting Memory Size for VM. (4400MB)
2025-12-18 10:25:23 (19784): Setting CPU Count for VM. (4)
2025-12-18 10:25:23 (19784): Setting Chipset Options for VM.
2025-12-18 10:25:23 (19784): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-18 10:25:23 (19784): Setting Boot Options for VM.
2025-12-18 10:25:24 (19784): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-18 10:25:24 (19784): Enabling VM Network Access.
2025-12-18 10:25:25 (19784): Disabling USB Support for VM.
2025-12-18 10:25:25 (19784): Disabling COM Port Support for VM.
2025-12-18 10:25:25 (19784): Disabling LPT Port Support for VM.
2025-12-18 10:25:25 (19784): Disabling Audio Support for VM.
2025-12-18 10:25:26 (19784): Disabling Clipboard Support for VM.
2025-12-18 10:25:26 (19784): Disabling Drag and Drop Support for VM.
2025-12-18 10:25:26 (19784): Adding storage controller(s) to VM.
2025-12-18 10:25:26 (19784): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-18 10:25:28 (19784): Adding VirtualBox Guest Additions to VM.
2025-12-18 10:25:29 (19784): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-18 10:25:29 (19784): forwarding host port 58314 to guest port 80
2025-12-18 10:25:29 (19784): Enabling remote desktop for VM.
2025-12-18 10:25:29 (19784): Required extension pack not installed, remote desktop not enabled.
2025-12-18 10:25:29 (19784): Enabling shared directory for VM.
2025-12-18 10:25:30 (19784): Starting VM using VBoxManage interface. (boinc_05d1a3141ffce854, slot#1)
2025-12-18 10:25:35 (19784): Successfully started VM. (PID = '17200')
2025-12-18 10:25:35 (19784): Reporting VM Process ID to BOINC.
2025-12-18 10:25:35 (19784): Guest Log: BIOS: VirtualBox 7.2.4
2025-12-18 10:25:35 (19784): Guest Log: CPUID EDX: 0x178bfbff
2025-12-18 10:25:35 (19784): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-18 10:25:35 (19784): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-18 10:25:35 (19784): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-18 10:25:35 (19784): Detected: Web Application Enabled (http://localhost:58314)
2025-12-18 10:25:35 (19784): Preference change detected
2025-12-18 10:25:35 (19784): Setting CPU throttle for VM. (100%)
2025-12-18 10:25:36 (19784): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 20 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-18 10:25:37 (19784): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-18 10:25:37 (19784): Guest Log: BIOS: Booting from Hard Disk...
2025-12-18 10:25:40 (19784): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-18 10:25:40 (19784): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-18 10:25:40 (19784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-18 10:25:46 (19784): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-18 10:25:46 (19784): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-18 10:25:52 (19784): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-18 10:25:52 (19784): Guest Log: 00:00:00.000132 main     Log opened 2025-12-18T10:25:51.140477000Z
2025-12-18 10:25:52 (19784): Guest Log: 00:00:00.000228 main     OS Product: Linux
2025-12-18 10:25:52 (19784): Guest Log: 00:00:00.000260 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-18 10:25:52 (19784): Guest Log: 00:00:00.000287 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-18 10:25:52 (19784): Guest Log: 00:00:00.000314 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-18 10:25:53 (19784): Guest Log: 00:00:00.000315 main     Process ID: 1308
2025-12-18 10:25:53 (19784): Guest Log: 00:00:00.000315 main     Package type: LINUX_64BITS_GENERIC
2025-12-18 10:25:53 (19784): Guest Log: 00:00:00.002191 main     5.2.32 r132073 started. Verbose level = 0
2025-12-18 10:25:53 (19784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-18 10:25:53 (19784): Guest Log: [INFO] Mounting shared directory
2025-12-18 10:25:53 (19784): Guest Log: [INFO] Checking for init_data.xml
2025-12-18 10:26:00 (19784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-18 10:26:00 (19784): Guest Log: [INFO] Detected branch: prod
2025-12-18 10:26:00 (19784): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-18 10:26:00 (19784): Guest Log: Copying input files
2025-12-18 10:26:02 (19784): Guest Log: Copied input files into RunAtlas.
2025-12-18 10:26:02 (19784): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-18 10:26:02 (19784): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-18 10:26:02 (19784): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-18 10:26:02 (19784): Guest Log: Further information can be found at the LHC@home message board.
2025-12-18 10:26:03 (19784): Guest Log: 00:00:10.089456 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 683 078 000ns (GuestNow=1 766 071 562 826 891 000 ns GuestLast=1 766 053 551 143 813 000 ns fSetTimeLastLoop=true )
2025-12-18 10:26:13 (19784): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-18 10:26:13 (19784): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-18 10:26:13 (19784): Guest Log: 2.6.3.0 1588 0 32172 154155 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-12-18 10:26:15 (19784): Guest Log: copied the webapp to /var/www
2025-12-18 10:26:15 (19784): Guest Log: ATHENA_PROC_NUMBER=4
2025-12-18 10:26:15 (19784): Guest Log: ATHENA_CORE_NUMBER=4
2025-12-18 10:26:15 (19784): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-18 10:26:15 (19784): Guest Log:  *** Starting ATLAS job. (PandaID=6932561721 taskID=47898782) ***
2025-12-18 12:22:37 (19784): Status Report: Elapsed Time: '6000.934565'
2025-12-18 12:22:37 (19784): Status Report: CPU Time: '24953.625000'
2025-12-18 14:21:42 (19784): Status Report: Elapsed Time: '12001.268764'
2025-12-18 14:21:42 (19784): Status Report: CPU Time: '52155.375000'
2025-12-18 14:37:11 (19784): Guest Log:  *** Job finished ***
2025-12-18 14:37:11 (19784): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:36:47,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:36:47,230 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:00,475 | INFO     | [monitor] cgroup control has ended
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:02,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140594668468032)>', '<ExcThread(monitor, started 140593967638272)>']
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:02,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:02,335 | INFO     | [monitor] control thread has ended
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,098 | INFO     | all workflow threads have been joined
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,098 | INFO     | end of generic workflow (traces error code: 0)
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,099 | INFO     | traces error code: 0
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,099 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,186 [wrapper] ==== pilot stdout END ====
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,190 [wrapper] ==== wrapper stdout RESUME ====
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,195 [wrapper] pilotpid: 6003
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,199 [wrapper] Pilot exit status: 0
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,408 [wrapper] pandaids: 6932561721
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,450 [wrapper] cleanup supervisor_pilot 16807 6004
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,455 [wrapper] Test setup, not cleaning
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,459 [wrapper] apfmon messages muted
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,463 [wrapper] ==== wrapper stdout END ====
2025-12-18 14:37:11 (19784): Guest Log: 2025-12-18 19:37:07,467 [wrapper] ==== wrapper stderr END ====
2025-12-18 14:37:11 (19784): Guest Log:  *** Error codes and diagnostics ***
2025-12-18 14:37:11 (19784): Guest Log:     "exeErrorCode": 0,
2025-12-18 14:37:11 (19784): Guest Log:     "exeErrorDiag": "",
2025-12-18 14:37:11 (19784): Guest Log:     "pilotErrorCode": 0,
2025-12-18 14:37:11 (19784): Guest Log:     "pilotErrorDiag": "",
2025-12-18 14:37:11 (19784): Guest Log:  *** Listing of results directory ***
2025-12-18 14:37:11 (19784): Guest Log: total 199724
2025-12-18 14:37:11 (19784): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Dec 17 19:55 pilot3.tar.gz
2025-12-18 14:37:11 (19784): Guest Log: -rwx------. 1 atlas atlas     36322 Dec 17 19:58 runpilot2-wrapper.sh
2025-12-18 14:37:11 (19784): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Dec 17 19:59 queuedata.json
2025-12-18 14:37:11 (19784): Guest Log: -rwxr-xr-x. 1 atlas atlas      8777 Dec 18 15:26 init_data.xml
2025-12-18 14:37:11 (19784): Guest Log: -rwxr-xr-x. 1 atlas atlas    592388 Dec 18 15:26 input.tar.gz
2025-12-18 14:37:11 (19784): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec 18 15:26 start_atlas.sh
2025-12-18 14:37:11 (19784): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec 18 15:26 EVNT.47898779._000238.pool.root.1 -> /data/./ATLAS.root_0
2025-12-18 14:37:11 (19784): Guest Log: -rw-r--r--. 1 atlas atlas      2522 Dec 18 15:26 pandaJob.out
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas    988125 Dec 18 15:27 agis_schedconf.cvmfs.json
2025-12-18 14:37:11 (19784): Guest Log: drwx------. 5 atlas atlas      4096 Dec 18 15:27 pilot3
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas 195922057 Dec 18 19:35 HITS.47898782._005913.pool.root.1
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas      1032 Dec 18 19:35 memory_monitor_summary.json
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec 18 19:35 agis_ddmendpoints.agis.ALL.json
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas    404522 Dec 18 19:35 log.47898782._005913.job.log.tgz.1
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas      7820 Dec 18 19:36 heartbeat.json
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas        95 Dec 18 19:36 pilot_heartbeat.json
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas      4991 Dec 18 19:37 pilotlog.txt
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas   1970442 Dec 18 19:37 log.47898782._005913.job.log.1
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas       357 Dec 18 19:37 output.list
2025-12-18 14:37:11 (19784): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec 18 19:37 runtime_log
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas   2396160 Dec 18 19:37 result.tar.gz
2025-12-18 14:37:11 (19784): Guest Log: -rw-r--r--. 1 atlas atlas      8741 Dec 18 19:37 runtime_log.err
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas       655 Dec 18 19:37 fgkKDmaqCq8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgjcKDm4g777m.diag
2025-12-18 14:37:11 (19784): Guest Log: Looking for outputfile HITS.47898782._005913.pool.root.1
2025-12-18 14:37:11 (19784): Guest Log: HITS file was successfully produced
2025-12-18 14:37:11 (19784): Guest Log: -rw-------. 1 atlas atlas 195922057 Dec 18 19:35 /home/atlas/RunAtlas/HITS.47898782._005913.pool.root.1
2025-12-18 14:37:12 (19784): Guest Log: Successfully finished the ATLAS job!
2025-12-18 14:37:12 (19784): Guest Log: Copying the results back to the shared directory!
2025-12-18 14:37:12 (19784): Guest Log:  *** Contents of shared directory: ***
2025-12-18 14:37:12 (19784): Guest Log: total 402852
2025-12-18 14:37:12 (19784): Guest Log: -rwxrwxrwx. 1 root root 213574026 Dec 18 15:25 ATLAS.root_0
2025-12-18 14:37:12 (19784): Guest Log: -rwxrwxrwx. 1 root root 195922057 Dec 18 19:37 HITS.pool.root.1
2025-12-18 14:37:12 (19784): Guest Log: -rwxrwxrwx. 1 root root      8777 Dec 18 15:25 init_data.xml
2025-12-18 14:37:12 (19784): Guest Log: -rwxrwxrwx. 1 root root    592388 Dec 18 07:18 input.tar.gz
2025-12-18 14:37:12 (19784): Guest Log: -rwxrwxrwx. 1 root root   2396160 Dec 18 19:37 result.tar.gz
2025-12-18 14:37:12 (19784): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec 18 07:18 start_atlas.sh
2025-12-18 14:37:12 (19784): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-18 14:37:12 (19784): VM Completion File Detected.
2025-12-18 14:37:12 (19784): Powering off VM.
2025-12-18 14:37:13 (19784): Successfully stopped VM.
2025-12-18 14:37:13 (19784): Deregistering VM. (boinc_05d1a3141ffce854, slot#1)
2025-12-18 14:37:13 (19784): Removing network bandwidth throttle group from VM.
2025-12-18 14:37:13 (19784): Removing VM from VirtualBox.
2025-12-18 14:37:18 (19784): called boinc_finish(0)

</stderr_txt>
]]>

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