Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:49:59 (20462): wrapper (7.7.26015): starting
11:49:59 (20462): wrapper: running run_atlas (--nthreads 8)
[2025-12-18 11:49:59] Arguments: --nthreads 8
[2025-12-18 11:49:59] Threads: 8
[2025-12-18 11:49:59] Checking for CVMFS
[2025-12-18 11:50:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 11:50:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 11:50:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 11:50:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 11:50:01] 2.11.2.0 2518 3636 88008 154147 1 298 15869128 25165825 2868 130560 0 2140512 99.738 1492515 2130 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-18 11:50:01] CVMFS is ok
[2025-12-18 11:50:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 11:50:01] Checking for apptainer binary...
[2025-12-18 11:50:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 11:50:01] Running /usr/bin/apptainer --version
[2025-12-18 11:50:01] apptainer version 1.3.2-1.el7
[2025-12-18 11:50:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 11:50:02] cg-vwn419.simple-grid.lan
[2025-12-18 11:50:02] apptainer works
[2025-12-18 11:50:02] Set ATHENA_PROC_NUMBER=8
[2025-12-18 11:50:02] Set ATHENA_CORE_NUMBER=8
[2025-12-18 11:50:02] Starting ATLAS job with PandaID=6932674399
[2025-12-18 11:50:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 16:10:03]  *** The last 200 lines of the pilot log: ***
[2025-12-18 16:10:03] 2025-12-18 15:09:13,682 | INFO     | 15527s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-18 16:10:03] 2025-12-18 15:09:14,683 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-18 16:10:03] 2025-12-18 15:09:14,684 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-18 16:10:03] 2025-12-18 15:09:14,686 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6932674399/memory_monitor_summary.json (trf name=prmon)
[2025-12-18 16:10:03] 2025-12-18 15:09:14,687 | INFO     | extracted standard info from prmon json
[2025-12-18 16:10:03] 2025-12-18 15:09:14,687 | INFO     | extracted standard memory fields from prmon json
[2025-12-18 16:10:03] 2025-12-18 15:09:14,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-18 16:10:03] 2025-12-18 15:09:14,688 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-18 16:10:03] 2025-12-18 15:09:14,688 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-18 16:10:03] 2025-12-18 15:09:14,693 | INFO     | fitting pss+swap vs Time
[2025-12-18 16:10:03] 2025-12-18 15:09:14,693 | INFO     | sum of square deviations: 4787066500.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,696 | INFO     | sum of deviations: 95997761739.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,696 | INFO     | mean x: 1766062845.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,696 | INFO     | mean y: 2410513.5100401607
[2025-12-18 16:10:03] 2025-12-18 15:09:14,696 | INFO     | intersect: -35413450162.41968
[2025-12-18 16:10:03] 2025-12-18 15:09:14,702 | INFO     | chi2: 5.639164302864438
[2025-12-18 16:10:03] 2025-12-18 15:09:14,702 | INFO     | sum of square deviations: 4504437945.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,705 | INFO     | sum of deviations: 110148082561.5
[2025-12-18 16:10:03] 2025-12-18 15:09:14,705 | INFO     | mean x: 1766062692.5
[2025-12-18 16:10:03] 2025-12-18 15:09:14,705 | INFO     | mean y: 2418004.643442623
[2025-12-18 16:10:03] 2025-12-18 15:09:14,705 | INFO     | intersect: -43183529196.20649
[2025-12-18 16:10:03] 2025-12-18 15:09:14,706 | INFO     | chi2: 4.9001113551382405
[2025-12-18 16:10:03] 2025-12-18 15:09:14,706 | INFO     | current chi2=4.9001113551382405 (change=13.105717585685383 %)
[2025-12-18 16:10:03] 2025-12-18 15:09:14,706 | INFO     | right removable region: 243
[2025-12-18 16:10:03] 2025-12-18 15:09:14,706 | INFO     | sum of square deviations: 4504437945.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,709 | INFO     | sum of deviations: 15205785644.5
[2025-12-18 16:10:03] 2025-12-18 15:09:14,709 | INFO     | mean x: 1766062997.5
[2025-12-18 16:10:03] 2025-12-18 15:09:14,709 | INFO     | mean y: 2454061.1926229508
[2025-12-18 16:10:03] 2025-12-18 15:09:14,709 | INFO     | intersect: -5959305364.192943
[2025-12-18 16:10:03] 2025-12-18 15:09:14,709 | INFO     | chi2: 1.440971890844108
[2025-12-18 16:10:03] 2025-12-18 15:09:14,709 | INFO     | current chi2=1.440971890844108 (change=74.44706673802428 %)
[2025-12-18 16:10:03] 2025-12-18 15:09:14,710 | INFO     | sum of square deviations: 4233158440.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,712 | INFO     | sum of deviations: -9869207507.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,712 | INFO     | mean x: 1766063150.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,712 | INFO     | mean y: 2468029.5062761507
[2025-12-18 16:10:03] 2025-12-18 15:09:14,712 | INFO     | intersect: 4119876802.378965
[2025-12-18 16:10:03] 2025-12-18 15:09:14,713 | INFO     | chi2: 0.8246376797855874
[2025-12-18 16:10:03] 2025-12-18 15:09:14,713 | INFO     | current chi2=0.8246376797855874 (change=42.772118941020956 %)
[2025-12-18 16:10:03] 2025-12-18 15:09:14,713 | INFO     | sum of square deviations: 3972995422.5
[2025-12-18 16:10:03] 2025-12-18 15:09:14,715 | INFO     | sum of deviations: -9751998355.5
[2025-12-18 16:10:03] 2025-12-18 15:09:14,715 | INFO     | mean x: 1766063302.5
[2025-12-18 16:10:03] 2025-12-18 15:09:14,715 | INFO     | mean y: 2467941.3974358975
[2025-12-18 16:10:03] 2025-12-18 15:09:14,716 | INFO     | intersect: 4337395267.050276
[2025-12-18 16:10:03] 2025-12-18 15:09:14,716 | INFO     | chi2: 0.8153592686487051
[2025-12-18 16:10:03] 2025-12-18 15:09:14,716 | INFO     | current chi2=0.8153592686487051 (change=1.1251500342907916 %)
[2025-12-18 16:10:03] 2025-12-18 15:09:14,716 | INFO     | left removable region: 30
[2025-12-18 16:10:03] 2025-12-18 15:09:14,717 | INFO     | sum of square deviations: 2996454322.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,726 | INFO     | sum of deviations: 5058517597.999999
[2025-12-18 16:10:03] 2025-12-18 15:09:14,726 | INFO     | mean x: 1766063577.0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,726 | INFO     | mean y: 2477589.751173709
[2025-12-18 16:10:03] 2025-12-18 15:09:14,726 | INFO     | intersect: -2978934013.2391577
[2025-12-18 16:10:03] 2025-12-18 15:09:14,727 | INFO     | chi2: 0.0004465895050047803
[2025-12-18 16:10:03] 2025-12-18 15:09:14,727 | INFO     | current memory leak: 1.69 B/s (using 213 data points, chi2=0.00)
[2025-12-18 16:10:03] 2025-12-18 15:09:14,728 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-12-18 16:10:03] 2025-12-18 15:09:14,728 | INFO     | ..............................
[2025-12-18 16:10:03] 2025-12-18 15:09:14,728 | INFO     | . Timing measurements:
[2025-12-18 16:10:03] 2025-12-18 15:09:14,728 | INFO     | . get job = 0 s
[2025-12-18 16:10:03] 2025-12-18 15:09:14,728 | INFO     | . initial setup = 2 s
[2025-12-18 16:10:03] 2025-12-18 15:09:14,728 | INFO     | . payload setup = 53 s
[2025-12-18 16:10:03] 2025-12-18 15:09:14,728 | INFO     | . stage-in = 0 s
[2025-12-18 16:10:03] 2025-12-18 15:09:14,729 | INFO     | . payload execution = 15327 s
[2025-12-18 16:10:03] 2025-12-18 15:09:14,729 | INFO     | . stage-out = 3 s
[2025-12-18 16:10:03] 2025-12-18 15:09:14,729 | INFO     | . log creation = 1 s
[2025-12-18 16:10:03] 2025-12-18 15:09:14,729 | INFO     | ..............................
[2025-12-18 16:10:03] 2025-12-18 15:09:14,875 | INFO     | 
[2025-12-18 16:10:03] 2025-12-18 15:09:14,876 | INFO     | job summary report
[2025-12-18 16:10:03] 2025-12-18 15:09:14,876 | INFO     | --------------------------------------------------
[2025-12-18 16:10:03] 2025-12-18 15:09:14,876 | INFO     | PanDA job id: 6932674399
[2025-12-18 16:10:03] 2025-12-18 15:09:14,876 | INFO     | task id: 47886933
[2025-12-18 16:10:03] 2025-12-18 15:09:14,876 | INFO     | errors: (none)
[2025-12-18 16:10:03] 2025-12-18 15:09:14,876 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-18 16:10:03] 2025-12-18 15:09:14,876 | INFO     | pilot state: finished 
[2025-12-18 16:10:03] 2025-12-18 15:09:14,876 | INFO     | transexitcode: 0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | exeerrorcode: 0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | exeerrordiag: 
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | exitcode: 0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | exitmsg: OK
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | cpuconsumptiontime: 57521 s
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | nevents: 400
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | neventsw: 0
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | pid: 8218
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | pgrp: 8218
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | corecount: 8
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | event service: False
[2025-12-18 16:10:03] 2025-12-18 15:09:14,877 | INFO     | sizes: {0: 2283799, 1: 2283998, 2: 2283998, 12: 2284026, 13: 2284316, 23: 2284372, 15384: 2315013, 15385: 2315012, 15390: 2324068, 15391: 2324124, 15493: 2324318}
[2025-12-18 16:10:03] 2025-12-18 15:09:14,878 | INFO     | --------------------------------------------------
[2025-12-18 16:10:03] 2025-12-18 15:09:14,878 | INFO     | 
[2025-12-18 16:10:03] 2025-12-18 15:09:14,878 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-18 16:10:03] 2025-12-18 15:09:15,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,339 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,341 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 16:10:03] 2025-12-18 15:09:15,342 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,342 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 16:10:03] 2025-12-18 15:09:15,342 | INFO     | job 6932674399 has completed (purged errors)
[2025-12-18 16:10:03] 2025-12-18 15:09:15,342 | INFO     | overall cleanup function is called
[2025-12-18 16:10:03] 2025-12-18 15:09:16,352 | INFO     | --- collectZombieJob: --- 10, [8218]
[2025-12-18 16:10:03] 2025-12-18 15:09:16,352 | INFO     | zombie collector waiting for pid 8218
[2025-12-18 16:10:03] 2025-12-18 15:09:16,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 16:10:03] 2025-12-18 15:09:16,352 | INFO     | collected zombie processes
[2025-12-18 16:10:03] 2025-12-18 15:09:16,352 | INFO     | will attempt to kill all subprocesses of pid=8218
[2025-12-18 16:10:03] 2025-12-18 15:09:16,461 | INFO     | process IDs to be killed: [8218] (in reverse order)
[2025-12-18 16:10:03] 2025-12-18 15:09:17,351 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 16:10:03] 2025-12-18 15:09:17,352 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 16:10:03] 2025-12-18 15:09:17,355 | INFO     | did not find any defunct processes belonging to 8218
[2025-12-18 16:10:03] 2025-12-18 15:09:17,358 | INFO     | did not find any defunct processes belonging to 8218
[2025-12-18 16:10:03] 2025-12-18 15:09:17,358 | INFO     | ready for new job
[2025-12-18 16:10:03] 2025-12-18 15:09:17,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 16:10:03] 2025-12-18 15:09:17,360 | INFO     | ***************************************
[2025-12-18 16:10:03] 2025-12-18 15:09:17,361 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 16:10:03] 2025-12-18 15:09:17,361 | INFO     | ***************************************
[2025-12-18 16:10:03] 2025-12-18 15:09:17,361 | INFO     | 
[2025-12-18 16:10:03] 2025-12-18 15:09:17,366 | INFO     | pilot is running in a VM
[2025-12-18 16:10:03] 2025-12-18 15:09:17,366 | INFO     | architecture information:
[2025-12-18 16:10:03] 2025-12-18 15:09:17,384 | INFO     | executing command: cat /etc/os-release
[2025-12-18 16:10:03] 2025-12-18 15:09:17,655 | INFO     | cat /etc/os-release:
[2025-12-18 16:10:03] NAME="CentOS Linux"
[2025-12-18 16:10:03] VERSION="7 (Core)"
[2025-12-18 16:10:03] ID="centos"
[2025-12-18 16:10:03] ID_LIKE="rhel fedora"
[2025-12-18 16:10:03] VERSION_ID="7"
[2025-12-18 16:10:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 16:10:03] ANSI_COLOR="0;31"
[2025-12-18 16:10:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 16:10:03] HOME_URL="https://www.centos.org/"
[2025-12-18 16:10:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 16:10:03] 
[2025-12-18 16:10:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 16:10:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 16:10:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 16:10:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 16:10:03] 
[2025-12-18 16:10:03] 2025-12-18 15:09:17,655 | INFO     | ***************************************
[2025-12-18 16:10:03] 2025-12-18 15:09:18,159 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-18 16:10:03] 2025-12-18 15:09:18,366 | INFO     | sufficient remaining disk space (496601399296 B)
[2025-12-18 16:10:03] 2025-12-18 15:09:18,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 16:10:03] 2025-12-18 15:09:18,367 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 16:10:03] 2025-12-18 15:09:18,367 | INFO     | update_server=False
[2025-12-18 16:10:03] 2025-12-18 15:09:18,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 16:10:03] 2025-12-18 15:09:18,367 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 16:10:03] 2025-12-18 15:09:18,387 | INFO     | all payload control threads have been joined
[2025-12-18 16:10:03] 2025-12-18 15:09:19,027 | INFO     | all data control threads have been joined
[2025-12-18 16:10:03] 2025-12-18 15:09:19,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 16:10:03] 2025-12-18 15:09:19,141 | INFO     | aborting loop
[2025-12-18 16:10:03] 2025-12-18 15:09:19,374 | INFO     | [job] retrieve thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:19,393 | INFO     | [payload] control thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:19,516 | INFO     | [job] validate thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:19,546 | INFO     | all job control threads have been joined
[2025-12-18 16:10:03] 2025-12-18 15:09:19,550 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 16:10:03] 2025-12-18 15:09:19,715 | INFO     | [payload] validate_post thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:19,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 16:10:03] 2025-12-18 15:09:19,924 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,033 | INFO     | [data] control thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,061 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,146 | INFO     | [job] job monitor thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,265 | INFO     | [data] copytool_in thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,294 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,364 | INFO     | [payload] failed_post thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,476 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,552 | INFO     | [job] control thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:20,900 | INFO     | [job] queue monitor thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:21,557 | INFO     | [data] copytool_out thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:22,375 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 16:10:03] 2025-12-18 15:09:46,925 | INFO     | PID=26517 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-18 16:10:03] 2025-12-18 15:09:46,925 | INFO     | .. there are 9 such processes running
[2025-12-18 16:10:03] 2025-12-18 15:09:46,926 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 16:10:03] 2025-12-18 15:09:46,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 16:10:03] 2025-12-18 15:09:46,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 16:10:03] 2025-12-18 15:09:54,974 | INFO     | [monitor] cgroup control has ended
[2025-12-18 16:10:03] 2025-12-18 15:09:54,977 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140275671451456)>', '<ExcThread(monitor, started 140275452856064)>']
[2025-12-18 16:10:03] 2025-12-18 15:09:55,979 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 16:10:03] 2025-12-18 15:09:55,979 | INFO     | [monitor] control thread has ended
[2025-12-18 16:10:03] 2025-12-18 15:10:00,003 | INFO     | all workflow threads have been joined
[2025-12-18 16:10:03] 2025-12-18 15:10:00,003 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 16:10:03] 2025-12-18 15:10:00,003 | INFO     | traces error code: 0
[2025-12-18 16:10:03] 2025-12-18 15:10:00,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 16:10:03] 2025-12-18 15:10:00,202 [wrapper] ==== pilot stdout END ====
[2025-12-18 16:10:03] 2025-12-18 15:10:00,281 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 16:10:03] 2025-12-18 15:10:00,356 [wrapper] pilotpid: 26517
[2025-12-18 16:10:03] 2025-12-18 15:10:00,454 [wrapper] Pilot exit status: 0
[2025-12-18 16:10:03] 2025-12-18 15:10:00,938 [wrapper] pandaids: 6932674399
[2025-12-18 16:10:03] 2025-12-18 15:10:01,547 [wrapper] cleanup supervisor_pilot 18151 26518
[2025-12-18 16:10:03] 2025-12-18 15:10:01,642 [wrapper] Test setup, not cleaning
[2025-12-18 16:10:03] 2025-12-18 15:10:01,708 [wrapper] apfmon messages muted
[2025-12-18 16:10:03] 2025-12-18 15:10:01,778 [wrapper] ==== wrapper stdout END ====
[2025-12-18 16:10:03] 2025-12-18 15:10:01,825 [wrapper] ==== wrapper stderr END ====
[2025-12-18 16:10:03]  *** Error codes and diagnostics ***
[2025-12-18 16:10:03]     "exeErrorCode": 0,
[2025-12-18 16:10:03]     "exeErrorDiag": "",
[2025-12-18 16:10:03]     "pilotErrorCode": 0,
[2025-12-18 16:10:03]     "pilotErrorDiag": "",
[2025-12-18 16:10:03]  *** Listing of results directory ***
[2025-12-18 16:10:03] total 340548
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc    579449 Dec 17 23:04 pilot3.tar.gz
[2025-12-18 16:10:03] -rwx------. 1 boinc boinc     36322 Dec 17 23:07 runpilot2-wrapper.sh
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc      5112 Dec 17 23:09 queuedata.json
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc       100 Dec 18 11:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 16:10:03] -rwxr-xr-x. 1 boinc boinc      7986 Dec 18 11:49 run_atlas
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc       105 Dec 18 11:49 job.xml
[2025-12-18 16:10:03] -rw-r--r--. 2 boinc boinc 191859309 Dec 18 11:49 EVNT.47886929._000414.pool.root.1
[2025-12-18 16:10:03] -rw-r--r--. 2 boinc boinc     15847 Dec 18 11:49 start_atlas.sh
[2025-12-18 16:10:03] drwxrwx--x. 2 boinc boinc        68 Dec 18 11:49 shared
[2025-12-18 16:10:03] -rw-r--r--. 2 boinc boinc    592405 Dec 18 11:49 input.tar.gz
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc      6391 Dec 18 11:49 init_data.xml
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc         0 Dec 18 11:49 boinc_lockfile
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc      2515 Dec 18 11:50 pandaJob.out
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc    988141 Dec 18 11:50 agis_schedconf.cvmfs.json
[2025-12-18 16:10:03] drwx------. 5 boinc boinc      4096 Dec 18 11:50 pilot3
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc 147862578 Dec 18 16:06 HITS.47886933._011788.pool.root.1
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc       531 Dec 18 16:06 boinc_task_state.xml
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc      1015 Dec 18 16:07 memory_monitor_summary.json
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc   1516240 Dec 18 16:07 agis_ddmendpoints.agis.ALL.json
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc    462158 Dec 18 16:07 log.47886933._011788.job.log.tgz.1
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc      7777 Dec 18 16:09 heartbeat.json
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc        95 Dec 18 16:09 pilot_heartbeat.json
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc      8192 Dec 18 16:09 boinc_mmap_file
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc        28 Dec 18 16:09 wrapper_checkpoint.txt
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc      4885 Dec 18 16:10 pilotlog.txt
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc   2089236 Dec 18 16:10 log.47886933._011788.job.log.1
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc       357 Dec 18 16:10 output.list
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc       620 Dec 18 16:10 runtime_log
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc   2570240 Dec 18 16:10 result.tar.gz
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc      8833 Dec 18 16:10 runtime_log.err
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc       656 Dec 18 16:10 9y1LDmSrEq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrIYKDmdpPFvn.diag
[2025-12-18 16:10:03] -rw-r--r--. 1 boinc boinc     20465 Dec 18 16:10 stderr.txt
[2025-12-18 16:10:03] HITS file was successfully produced:
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc 147862578 Dec 18 16:06 shared/HITS.pool.root.1
[2025-12-18 16:10:03]  *** Contents of shared directory: ***
[2025-12-18 16:10:03] total 334872
[2025-12-18 16:10:03] -rw-r--r--. 2 boinc boinc 191859309 Dec 18 11:49 ATLAS.root_0
[2025-12-18 16:10:03] -rw-r--r--. 2 boinc boinc     15847 Dec 18 11:49 start_atlas.sh
[2025-12-18 16:10:03] -rw-r--r--. 2 boinc boinc    592405 Dec 18 11:49 input.tar.gz
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc 147862578 Dec 18 16:06 HITS.pool.root.1
[2025-12-18 16:10:03] -rw-------. 1 boinc boinc   2570240 Dec 18 16:10 result.tar.gz
16:10:05 (20462): run_atlas exited; CPU time 57732.148401
16:10:05 (20462): called boinc_finish(0)

</stderr_txt>
]]>

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