Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:35:19 (2265374): wrapper (7.7.26015): starting
13:35:19 (2265374): wrapper: running run_atlas (--nthreads 2)
[2025-12-18 13:35:19] Arguments: --nthreads 2
[2025-12-18 13:35:19] Threads: 2
[2025-12-18 13:35:19] Checking for CVMFS
[2025-12-18 13:35:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 13:35:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 13:35:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 13:35:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 13:35:19] 2.9.2.0 769479 7423 62580 154149 1 57 36339705 36864000 0 130560 0 3955197 99.987 269370 9661 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 13:35:19] CVMFS is ok
[2025-12-18 13:35:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 13:35:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 13:35:19] Further information can be found at the LHC@home message board.
[2025-12-18 13:35:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 13:35:19] Checking for apptainer binary...
[2025-12-18 13:35:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 13:35:19] Running /usr/bin/apptainer --version
[2025-12-18 13:35:19] apptainer version 1.4.1-1.1
[2025-12-18 13:35:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 13:35:19] thA337
[2025-12-18 13:35:19] apptainer works
[2025-12-18 13:35:19] Set ATHENA_PROC_NUMBER=2
[2025-12-18 13:35:19] Set ATHENA_CORE_NUMBER=2
[2025-12-18 13:35:19] Starting ATLAS job with PandaID=6932674083
[2025-12-18 13:35:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 15:44:58]  *** The last 200 lines of the pilot log: ***
[2025-12-18 15:44:58] 2025-12-18 14:44:26,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-18 15:44:58] 2025-12-18 14:44:26,808 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-18 15:44:58] 2025-12-18 14:44:26,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 15:44:58] 2025-12-18 14:44:26,808 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 15:44:58] 2025-12-18 14:44:26,808 | INFO     | job 6932674083 has completed (purged errors)
[2025-12-18 15:44:58] 2025-12-18 14:44:26,808 | INFO     | overall cleanup function is called
[2025-12-18 15:44:58] 2025-12-18 14:44:27,814 | INFO     | --- collectZombieJob: --- 10, [2275503]
[2025-12-18 15:44:58] 2025-12-18 14:44:27,815 | INFO     | zombie collector waiting for pid 2275503
[2025-12-18 15:44:58] 2025-12-18 14:44:27,815 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 15:44:58] 2025-12-18 14:44:27,815 | INFO     | collected zombie processes
[2025-12-18 15:44:58] 2025-12-18 14:44:27,815 | INFO     | will attempt to kill all subprocesses of pid=2275503
[2025-12-18 15:44:58] 2025-12-18 14:44:27,848 | INFO     | process IDs to be killed: [2275503] (in reverse order)
[2025-12-18 15:44:58] 2025-12-18 14:44:27,867 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 15:44:58] 2025-12-18 14:44:27,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 15:44:58] 2025-12-18 14:44:27,868 | INFO     | did not find any defunct processes belonging to 2275503
[2025-12-18 15:44:58] 2025-12-18 14:44:27,869 | INFO     | did not find any defunct processes belonging to 2275503
[2025-12-18 15:44:58] 2025-12-18 14:44:27,869 | INFO     | ready for new job
[2025-12-18 15:44:58] 2025-12-18 14:44:27,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 15:44:58] 2025-12-18 14:44:27,869 | INFO     | ***************************************
[2025-12-18 15:44:58] 2025-12-18 14:44:27,869 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 15:44:58] 2025-12-18 14:44:27,869 | INFO     | ***************************************
[2025-12-18 15:44:58] 2025-12-18 14:44:27,869 | INFO     | 
[2025-12-18 15:44:58] 2025-12-18 14:44:27,870 | INFO     | architecture information:
[2025-12-18 15:44:58] 2025-12-18 14:44:27,870 | INFO     | executing command: cat /etc/os-release
[2025-12-18 15:44:58] 2025-12-18 14:44:27,878 | INFO     | cat /etc/os-release:
[2025-12-18 15:44:58] NAME="CentOS Linux"
[2025-12-18 15:44:58] VERSION="7 (Core)"
[2025-12-18 15:44:58] ID="centos"
[2025-12-18 15:44:58] ID_LIKE="rhel fedora"
[2025-12-18 15:44:58] VERSION_ID="7"
[2025-12-18 15:44:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 15:44:58] ANSI_COLOR="0;31"
[2025-12-18 15:44:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 15:44:58] HOME_URL="https://www.centos.org/"
[2025-12-18 15:44:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 15:44:58] 
[2025-12-18 15:44:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 15:44:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 15:44:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 15:44:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 15:44:58] 
[2025-12-18 15:44:58] 2025-12-18 14:44:27,878 | INFO     | ***************************************
[2025-12-18 15:44:58] 2025-12-18 14:44:28,381 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 15:44:58] 2025-12-18 14:44:28,392 | INFO     | sufficient remaining disk space (474712375296 B)
[2025-12-18 15:44:58] 2025-12-18 14:44:28,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 15:44:58] 2025-12-18 14:44:28,392 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 15:44:58] 2025-12-18 14:44:28,392 | INFO     | update_server=False
[2025-12-18 15:44:58] 2025-12-18 14:44:28,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 15:44:58] 2025-12-18 14:44:28,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 15:44:58] 2025-12-18 14:44:28,707 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 15:44:58] 2025-12-18 14:44:28,708 | INFO     | aborting loop
[2025-12-18 15:44:58] 2025-12-18 14:44:29,265 | INFO     | all data control threads have been joined
[2025-12-18 15:44:58] 2025-12-18 14:44:29,382 | INFO     | all job control threads have been joined
[2025-12-18 15:44:58] 2025-12-18 14:44:29,398 | INFO     | [job] retrieve thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:29,399 | INFO     | [job] queue monitor thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:29,415 | INFO     | [job] validate thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:29,523 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:29,571 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:29,618 | INFO     | [payload] validate_post thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:29,708 | INFO     | all payload control threads have been joined
[2025-12-18 15:44:58] 2025-12-18 14:44:29,713 | INFO     | [job] job monitor thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:29,788 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 15:44:58] 2025-12-18 14:44:30,271 | INFO     | [data] control thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:30,305 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:30,388 | INFO     | [job] control thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:30,583 | INFO     | [data] copytool_in thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:30,684 | INFO     | [payload] failed_post thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:30,714 | INFO     | [payload] control thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:31,514 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 15:44:58] 2025-12-18 14:44:31,795 | INFO     | [data] copytool_out thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:35,522 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:38,491 | INFO     | job.realtimelogging is not enabled
[2025-12-18 15:44:58] 2025-12-18 14:44:39,496 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 15:44:58] 2025-12-18 14:44:43,563 | INFO     | [monitor] cgroup control has ended
[2025-12-18 15:44:58] 2025-12-18 14:44:45,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140175702431552)>', '<ExcThread(monitor, started 140174746957568)>']
[2025-12-18 15:44:58] 2025-12-18 14:44:50,116 | INFO     | all workflow threads have been joined
[2025-12-18 15:44:58] 2025-12-18 14:44:50,117 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 15:44:58] 2025-12-18 14:44:50,117 | INFO     | traces error code: 0
[2025-12-18 15:44:58] 2025-12-18 14:44:50,117 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 15:44:58] 2025-12-18 14:44:58,631 | INFO     | PID=2269083 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-18 15:44:58] 2025-12-18 14:44:58,631 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 15:44:58] 2025-12-18 14:44:58,631 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 15:44:58] 2025-12-18 14:44:58,631 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 15:44:58] 2025-12-18 14:44:58,631 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 15:44:58] 2025-12-18 14:44:58,631 | INFO     | [monitor] control thread has ended
[2025-12-18 15:44:58] 2025-12-18 14:44:58,668 [wrapper] ==== pilot stdout END ====
[2025-12-18 15:44:58] 2025-12-18 14:44:58,670 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 15:44:58] 2025-12-18 14:44:58,673 [wrapper] pilotpid: 2269083
[2025-12-18 15:44:58] 2025-12-18 14:44:58,675 [wrapper] Pilot exit status: 0
[2025-12-18 15:44:58] 2025-12-18 14:44:58,681 [wrapper] pandaids: 6932674083
[2025-12-18 15:44:58] 2025-12-18 14:44:58,693 [wrapper] cleanup supervisor_pilot 2289479 2269084
[2025-12-18 15:44:58] 2025-12-18 14:44:58,696 [wrapper] Test setup, not cleaning
[2025-12-18 15:44:58] 2025-12-18 14:44:58,698 [wrapper] apfmon messages muted
[2025-12-18 15:44:58] 2025-12-18 14:44:58,700 [wrapper] ==== wrapper stdout END ====
[2025-12-18 15:44:58] 2025-12-18 14:44:58,702 [wrapper] ==== wrapper stderr END ====
[2025-12-18 15:44:58]  *** Error codes and diagnostics ***
[2025-12-18 15:44:58]     "exeErrorCode": 0,
[2025-12-18 15:44:58]     "exeErrorDiag": "",
[2025-12-18 15:44:58]     "pilotErrorCode": 0,
[2025-12-18 15:44:58]     "pilotErrorDiag": "",
[2025-12-18 15:44:58]  *** Listing of results directory ***
[2025-12-18 15:44:58] total 342688
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc    579449 Dec 17 23:04 pilot3.tar.gz
[2025-12-18 15:44:58] -rwx------ 1 boinc boinc     36322 Dec 17 23:07 runpilot2-wrapper.sh
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc      5112 Dec 17 23:09 queuedata.json
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc       100 Dec 18 13:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 15:44:58] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 13:35 run_atlas
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc       105 Dec 18 13:35 job.xml
[2025-12-18 15:44:58] -rw-r--r-- 2 boinc boinc 192174761 Dec 18 13:35 EVNT.47886929._000403.pool.root.1
[2025-12-18 15:44:58] -rw-r--r-- 2 boinc boinc    592404 Dec 18 13:35 input.tar.gz
[2025-12-18 15:44:58] -rw-r--r-- 2 boinc boinc     15847 Dec 18 13:35 start_atlas.sh
[2025-12-18 15:44:58] drwxrwx--x 2 boinc boinc      4096 Dec 18 13:35 shared
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc         0 Dec 18 13:35 boinc_setup_complete
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc      6206 Dec 18 13:35 init_data.xml
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc         0 Dec 18 13:35 boinc_lockfile
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc      2515 Dec 18 13:35 pandaJob.out
[2025-12-18 15:44:58] -rw------- 1 boinc boinc    988141 Dec 18 13:35 agis_schedconf.cvmfs.json
[2025-12-18 15:44:58] -rw------- 1 boinc boinc   1516240 Dec 18 13:35 agis_ddmendpoints.agis.ALL.json
[2025-12-18 15:44:58] drwx------ 5 boinc boinc      4096 Dec 18 13:35 pilot3
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc       529 Dec 18 15:44 boinc_task_state.xml
[2025-12-18 15:44:58] -rw------- 1 boinc boinc 152068377 Dec 18 15:44 HITS.47886933._011517.pool.root.1
[2025-12-18 15:44:58] -rw------- 1 boinc boinc        95 Dec 18 15:44 pilot_heartbeat.json
[2025-12-18 15:44:58] -rw------- 1 boinc boinc      1013 Dec 18 15:44 memory_monitor_summary.json
[2025-12-18 15:44:58] -rw------- 1 boinc boinc    273644 Dec 18 15:44 log.47886933._011517.job.log.tgz.1
[2025-12-18 15:44:58] -rw------- 1 boinc boinc      7743 Dec 18 15:44 heartbeat.json
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc      8192 Dec 18 15:44 boinc_mmap_file
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc        27 Dec 18 15:44 wrapper_checkpoint.txt
[2025-12-18 15:44:58] -rw------- 1 boinc boinc       747 Dec 18 15:44 pilotlog.txt
[2025-12-18 15:44:58] -rw------- 1 boinc boinc   1113577 Dec 18 15:44 log.47886933._011517.job.log.1
[2025-12-18 15:44:58] -rw------- 1 boinc boinc       357 Dec 18 15:44 output.list
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc       620 Dec 18 15:44 runtime_log
[2025-12-18 15:44:58] -rw------- 1 boinc boinc   1402880 Dec 18 15:44 result.tar.gz
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc      8897 Dec 18 15:44 runtime_log.err
[2025-12-18 15:44:58] -rw------- 1 boinc boinc       659 Dec 18 15:44 LAZNDmRrEq8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdHYKDm8LFoRn.diag
[2025-12-18 15:44:58] -rw-r--r-- 1 boinc boinc     11306 Dec 18 15:44 stderr.txt
[2025-12-18 15:44:58] HITS file was successfully produced:
[2025-12-18 15:44:58] -rw------- 1 boinc boinc 152068377 Dec 18 15:44 shared/HITS.pool.root.1
[2025-12-18 15:44:58]  *** Contents of shared directory: ***
[2025-12-18 15:44:58] total 338156
[2025-12-18 15:44:58] -rw-r--r-- 2 boinc boinc 192174761 Dec 18 13:35 ATLAS.root_0
[2025-12-18 15:44:58] -rw-r--r-- 2 boinc boinc    592404 Dec 18 13:35 input.tar.gz
[2025-12-18 15:44:58] -rw-r--r-- 2 boinc boinc     15847 Dec 18 13:35 start_atlas.sh
[2025-12-18 15:44:58] -rw------- 1 boinc boinc 152068377 Dec 18 15:44 HITS.pool.root.1
[2025-12-18 15:44:58] -rw------- 1 boinc boinc   1402880 Dec 18 15:44 result.tar.gz
15:45:00 (2265374): run_atlas exited; CPU time 15054.179968
15:45:00 (2265374): called boinc_finish(0)

</stderr_txt>
]]>

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