Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:46:40 (1913239): wrapper (7.7.26015): starting
13:46:40 (1913239): wrapper: running run_atlas (--nthreads 3)
[2025-12-18 13:46:40] Arguments: --nthreads 3
[2025-12-18 13:46:40] Threads: 3
[2025-12-18 13:46:40] Checking for CVMFS
[2025-12-18 13:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-18 13:46:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-18 13:46:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-18 13:46:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-18 13:46:41] 2.9.2.0 19183 7658 71268 154151 2 56 32391011 36864000 0 130560 0 4991331 99.989 280671 8511 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-18 13:46:41] CVMFS is ok
[2025-12-18 13:46:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-18 13:46:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-18 13:46:41] Further information can be found at the LHC@home message board.
[2025-12-18 13:46:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-18 13:46:41] Checking for apptainer binary...
[2025-12-18 13:46:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-18 13:46:41] Running /usr/bin/apptainer --version
[2025-12-18 13:46:41] apptainer version 1.4.1-1.1
[2025-12-18 13:46:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-18 13:46:41] magicA244b
[2025-12-18 13:46:41] apptainer works
[2025-12-18 13:46:41] Set ATHENA_PROC_NUMBER=3
[2025-12-18 13:46:41] Set ATHENA_CORE_NUMBER=3
[2025-12-18 13:46:41] Starting ATLAS job with PandaID=6932535049
[2025-12-18 13:46:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-18 15:51:13]  *** The last 200 lines of the pilot log: ***
[2025-12-18 15:51:13] 2025-12-18 14:50:55,243 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-18 15:51:13] 2025-12-18 14:50:55,243 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-18 15:51:13] 2025-12-18 14:50:55,244 | INFO     | job 6932535049 has completed (purged errors)
[2025-12-18 15:51:13] 2025-12-18 14:50:55,244 | INFO     | overall cleanup function is called
[2025-12-18 15:51:13] 2025-12-18 14:50:56,250 | INFO     | --- collectZombieJob: --- 10, [1923415]
[2025-12-18 15:51:13] 2025-12-18 14:50:56,250 | INFO     | zombie collector waiting for pid 1923415
[2025-12-18 15:51:13] 2025-12-18 14:50:56,251 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-18 15:51:13] 2025-12-18 14:50:56,251 | INFO     | collected zombie processes
[2025-12-18 15:51:13] 2025-12-18 14:50:56,251 | INFO     | will attempt to kill all subprocesses of pid=1923415
[2025-12-18 15:51:13] 2025-12-18 14:50:56,288 | INFO     | process IDs to be killed: [1923415] (in reverse order)
[2025-12-18 15:51:13] 2025-12-18 14:50:56,312 | WARNING  | found no corresponding commands to process id(s)
[2025-12-18 15:51:13] 2025-12-18 14:50:56,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-18 15:51:13] 2025-12-18 14:50:56,313 | INFO     | did not find any defunct processes belonging to 1923415
[2025-12-18 15:51:13] 2025-12-18 14:50:56,314 | INFO     | did not find any defunct processes belonging to 1923415
[2025-12-18 15:51:13] 2025-12-18 14:50:56,314 | INFO     | ready for new job
[2025-12-18 15:51:13] 2025-12-18 14:50:56,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-18 15:51:13] 2025-12-18 14:50:56,315 | INFO     | ***************************************
[2025-12-18 15:51:13] 2025-12-18 14:50:56,315 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-18 15:51:13] 2025-12-18 14:50:56,315 | INFO     | ***************************************
[2025-12-18 15:51:13] 2025-12-18 14:50:56,315 | INFO     | 
[2025-12-18 15:51:13] 2025-12-18 14:50:56,315 | INFO     | architecture information:
[2025-12-18 15:51:13] 2025-12-18 14:50:56,316 | INFO     | executing command: cat /etc/os-release
[2025-12-18 15:51:13] 2025-12-18 14:50:56,324 | INFO     | cat /etc/os-release:
[2025-12-18 15:51:13] NAME="CentOS Linux"
[2025-12-18 15:51:13] VERSION="7 (Core)"
[2025-12-18 15:51:13] ID="centos"
[2025-12-18 15:51:13] ID_LIKE="rhel fedora"
[2025-12-18 15:51:13] VERSION_ID="7"
[2025-12-18 15:51:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-18 15:51:13] ANSI_COLOR="0;31"
[2025-12-18 15:51:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-18 15:51:13] HOME_URL="https://www.centos.org/"
[2025-12-18 15:51:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-18 15:51:13] 
[2025-12-18 15:51:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-18 15:51:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-18 15:51:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-18 15:51:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-18 15:51:13] 
[2025-12-18 15:51:13] 2025-12-18 14:50:56,324 | INFO     | ***************************************
[2025-12-18 15:51:13] 2025-12-18 14:50:56,828 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | INFO     | sufficient remaining disk space (327732428800 B)
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | INFO     | current server update state: UPDATING_FINAL
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | INFO     | update_server=False
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | INFO     | found 0 job(s) in 20 queues
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-18 15:51:13] 2025-12-18 14:50:56,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-18 15:51:13] 2025-12-18 14:50:57,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-18 15:51:13] 2025-12-18 14:50:57,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-18 15:51:13] 2025-12-18 14:50:57,271 | INFO     | aborting loop
[2025-12-18 15:51:13] 2025-12-18 14:50:57,486 | INFO     | all job control threads have been joined
[2025-12-18 15:51:13] 2025-12-18 14:50:57,695 | INFO     | all data control threads have been joined
[2025-12-18 15:51:13] 2025-12-18 14:50:57,715 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-18 15:51:13] 2025-12-18 14:50:57,847 | INFO     | [job] retrieve thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:57,880 | INFO     | [payload] execute_payloads thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:57,994 | INFO     | [job] create_data_payload thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:58,141 | INFO     | [job] validate thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:58,156 | INFO     | [payload] validate_pre thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:58,198 | INFO     | all payload control threads have been joined
[2025-12-18 15:51:13] 2025-12-18 14:50:58,277 | INFO     | [job] job monitor thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:58,411 | INFO     | [payload] validate_post thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:58,492 | INFO     | [job] control thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:58,700 | INFO     | [data] copytool_in thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:58,701 | INFO     | [data] control thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:58,916 | INFO     | [payload] failed_post thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:59,204 | INFO     | [payload] control thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:59,722 | INFO     | [data] copytool_out thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:50:59,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-18 15:51:13] 2025-12-18 14:51:00,660 | INFO     | [monitor] cgroup control has ended
[2025-12-18 15:51:13] 2025-12-18 14:51:00,780 | INFO     | [job] queue monitor thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:51:01,128 | INFO     | [data] queue_monitor thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:51:07,179 | INFO     | job.realtimelogging is not enabled
[2025-12-18 15:51:13] 2025-12-18 14:51:08,185 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-18 15:51:13] 2025-12-18 14:51:08,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388067026752)>', '<ExcThread(monitor, started 140387414947584)>']
[2025-12-18 15:51:13] 2025-12-18 14:51:08,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-18 15:51:13] 2025-12-18 14:51:08,902 | INFO     | [monitor] control thread has ended
[2025-12-18 15:51:13] 2025-12-18 14:51:13,233 | INFO     | all workflow threads have been joined
[2025-12-18 15:51:13] 2025-12-18 14:51:13,233 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-18 15:51:13] 2025-12-18 14:51:13,233 | INFO     | traces error code: 0
[2025-12-18 15:51:13] 2025-12-18 14:51:13,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-18 15:51:13] 2025-12-18 14:51:13,279 [wrapper] ==== pilot stdout END ====
[2025-12-18 15:51:13] 2025-12-18 14:51:13,283 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-18 15:51:13] 2025-12-18 14:51:13,286 [wrapper] pilotpid: 1916970
[2025-12-18 15:51:13] 2025-12-18 14:51:13,288 [wrapper] Pilot exit status: 0
[2025-12-18 15:51:13] 2025-12-18 14:51:13,295 [wrapper] pandaids: 6932535049
[2025-12-18 15:51:13] 2025-12-18 14:51:13,311 [wrapper] cleanup supervisor_pilot 1937902 1916971
[2025-12-18 15:51:13] 2025-12-18 14:51:13,314 [wrapper] Test setup, not cleaning
[2025-12-18 15:51:13] 2025-12-18 14:51:13,316 [wrapper] apfmon messages muted
[2025-12-18 15:51:13] 2025-12-18 14:51:13,319 [wrapper] ==== wrapper stdout END ====
[2025-12-18 15:51:13] 2025-12-18 14:51:13,321 [wrapper] ==== wrapper stderr END ====
[2025-12-18 15:51:13]  *** Error codes and diagnostics ***
[2025-12-18 15:51:13]     "exeErrorCode": 0,
[2025-12-18 15:51:13]     "exeErrorDiag": "",
[2025-12-18 15:51:13]     "pilotErrorCode": 0,
[2025-12-18 15:51:13]     "pilotErrorDiag": "",
[2025-12-18 15:51:13]  *** Listing of results directory ***
[2025-12-18 15:51:13] total 408188
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc    579449 Dec 17 15:12 pilot3.tar.gz
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc      5112 Dec 17 15:14 queuedata.json
[2025-12-18 15:51:13] -rwx------ 1 boinc boinc     36322 Dec 17 15:16 runpilot2-wrapper.sh
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc       100 Dec 18 13:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-18 15:51:13] -rwxr-xr-x 1 boinc boinc      7986 Dec 18 13:46 run_atlas
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc       105 Dec 18 13:46 job.xml
[2025-12-18 15:51:13] -rw-r--r-- 2 boinc boinc 214143734 Dec 18 13:46 EVNT.47898833._000181.pool.root.1
[2025-12-18 15:51:13] drwxrwx--x 2 boinc boinc      4096 Dec 18 13:46 shared
[2025-12-18 15:51:13] -rw-r--r-- 2 boinc boinc    592399 Dec 18 13:46 input.tar.gz
[2025-12-18 15:51:13] -rw-r--r-- 2 boinc boinc     15847 Dec 18 13:46 start_atlas.sh
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc         0 Dec 18 13:46 boinc_setup_complete
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc      6199 Dec 18 13:46 init_data.xml
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc         0 Dec 18 13:46 boinc_lockfile
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc      2552 Dec 18 13:46 pandaJob.out
[2025-12-18 15:51:13] -rw------- 1 boinc boinc    988141 Dec 18 13:46 agis_schedconf.cvmfs.json
[2025-12-18 15:51:13] -rw------- 1 boinc boinc   1516240 Dec 18 13:46 agis_ddmendpoints.agis.ALL.json
[2025-12-18 15:51:13] drwx------ 5 boinc boinc      4096 Dec 18 13:46 pilot3
[2025-12-18 15:51:13] -rw------- 1 boinc boinc        95 Dec 18 15:50 pilot_heartbeat.json
[2025-12-18 15:51:13] -rw------- 1 boinc boinc 197231167 Dec 18 15:50 HITS.47898836._004645.pool.root.1
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc       529 Dec 18 15:50 boinc_task_state.xml
[2025-12-18 15:51:13] -rw------- 1 boinc boinc      1016 Dec 18 15:50 memory_monitor_summary.json
[2025-12-18 15:51:13] -rw------- 1 boinc boinc    282416 Dec 18 15:50 log.47898836._004645.job.log.tgz.1
[2025-12-18 15:51:13] -rw------- 1 boinc boinc      7758 Dec 18 15:50 heartbeat.json
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc      8192 Dec 18 15:51 boinc_mmap_file
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc        27 Dec 18 15:51 wrapper_checkpoint.txt
[2025-12-18 15:51:13] -rw------- 1 boinc boinc      4628 Dec 18 15:51 pilotlog.txt
[2025-12-18 15:51:13] -rw------- 1 boinc boinc   1072593 Dec 18 15:51 log.47898836._004645.job.log.1
[2025-12-18 15:51:13] -rw------- 1 boinc boinc       357 Dec 18 15:51 output.list
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc       620 Dec 18 15:51 runtime_log
[2025-12-18 15:51:13] -rw------- 1 boinc boinc   1372160 Dec 18 15:51 result.tar.gz
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc      8917 Dec 18 15:51 runtime_log.err
[2025-12-18 15:51:13] -rw------- 1 boinc boinc       663 Dec 18 15:51 himMDmxV7p8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmajXKDmqb6I3n.diag
[2025-12-18 15:51:13] -rw-r--r-- 1 boinc boinc     11034 Dec 18 15:51 stderr.txt
[2025-12-18 15:51:13] HITS file was successfully produced:
[2025-12-18 15:51:13] -rw------- 1 boinc boinc 197231167 Dec 18 15:50 shared/HITS.pool.root.1
[2025-12-18 15:51:13]  *** Contents of shared directory: ***
[2025-12-18 15:51:13] total 403684
[2025-12-18 15:51:13] -rw-r--r-- 2 boinc boinc 214143734 Dec 18 13:46 ATLAS.root_0
[2025-12-18 15:51:13] -rw-r--r-- 2 boinc boinc    592399 Dec 18 13:46 input.tar.gz
[2025-12-18 15:51:13] -rw-r--r-- 2 boinc boinc     15847 Dec 18 13:46 start_atlas.sh
[2025-12-18 15:51:13] -rw------- 1 boinc boinc 197231167 Dec 18 15:50 HITS.pool.root.1
[2025-12-18 15:51:13] -rw------- 1 boinc boinc   1372160 Dec 18 15:51 result.tar.gz
15:51:15 (1913239): run_atlas exited; CPU time 21593.291089
15:51:15 (1913239): called boinc_finish(0)

</stderr_txt>
]]>

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